WMU43366 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43366
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 5048097 .. 5048479 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTACGGAATCAATAATTTTTATTGAATGATAAAAATACAATACAAACCTCAAAAGTAGCAACATTTATTTGATGGGAATTTAATTTGATTAATTAATCAAGGGCTAGAAGTAAAGTTGAAATTAGCACAAGTTGTCATTCGACCTAAAAGAGTGGAGCTAAATCCAAGTCTGGAAGAGGCCAAATCAAATTCAAGCAAATTATCCTCAATTTGGTGGGCCCCAATAACAATCGCCGTTCTTGGTTCAACTCCACCGTCAACAAATCCCAAGCACAAAACCTCGTCGTTTACAGACACCATTGAATTCGCACCGAATATTCTCCAAATCACTTTCTTGTTCTGCAAAATCAAATCGATCGACGGCACGCCCGCCCCCAATCGAGT

Library


Library category	ESTs
watermelon fusarium SSH library	3

Homology

[Close]

BLAST of WMU43366 vs. TAIR10
Match: AT1G03220.1 (AT1G03220.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 147.5 bits (371), Expect = 5.6e-36
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLG  VP I+L+L +K V+WRIFGANSMVSV+D+V+CLGFVDGGV  RT++VIG  Q+E
Sbjct: 339 TRLGYAVPEIELVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLE 398

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           DNL+EFDLAS++ GFSSTLLGR T CANFNFTS+
Sbjct: 399 DNLIEFDLASNKFGFSSTLLGRQTNCANFNFTST 432

Query: 223  282
           
Sbjct: 459  432

Query: 283  342
           
Sbjct: 519  432

Query: 343  385
           
Sbjct: 579  432

[Close]

BLAST of WMU43366 vs. TAIR10
Match: AT1G03230.1 (AT1G03230.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-35
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLG  VP I L+L +K V+WRIFGANSMVSV+D+V+CLGFVDGGV P  ++VIG  Q+E
Sbjct: 340 TRLGYAVPEIQLVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVNPGASVVIGGFQLE 399

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           DNL+EFDLAS++ GFSSTLLGR T CANFNFTS+
Sbjct: 400 DNLIEFDLASNKFGFSSTLLGRQTNCANFNFTST 433

Query: 223  282
           
Sbjct: 460  433

Query: 283  342
           
Sbjct: 520  433

Query: 343  385
           
Sbjct: 580  433

[Close]

BLAST of WMU43366 vs. TAIR10
Match: AT5G19100.1 (AT5G19100.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = -1


Query: 124 GAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIEDNL 183
           G GVP IDL+L      WRI+G+NS+V VN  V+CLGFVDGGV+P+  IVIG  Q+EDNL
Sbjct: 302 GRGVPVIDLVLSGGAK-WRIYGSNSLVKVNKNVVCLGFVDGGVKPKYPIVIGGFQMEDNL 361

Query: 184 LEFDLASSRLGFSSTLLGRMTTCA 243
           +EFDL +S+  FSS+LL   T+C+
Sbjct: 362 VEFDLEASKFSFSSSLLLHNTSCS 384

Query: 244  303
           
Sbjct: 422  384

Query: 304  363
           
Sbjct: 482  384

Query: 364  376
           
Sbjct: 542  384

[Close]

BLAST of WMU43366 vs. TAIR10
Match: AT5G19110.1 (AT5G19110.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = -1


Query: 118 GAGVPSIDLILQNK--KVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIED 177
           G  VP I++ L  +  +V W  +GAN++V V + V+CL F+DGG  P+  +VIG HQ++D
Sbjct: 314 GPNVPVIEIGLPGRIGEVKWGFYGANTVVKVKETVMCLAFIDGGKTPKDLMVIGTHQLQD 373

Query: 178 NLLEFDLASSRLGFSSTLLGRMTTCANF 237
           ++LEFD + + L FS +LL   T+C+ +
Sbjct: 374 HMLEFDFSGTVLAFSESLLLHNTSCSTW 401

Query: 238  297
           
Sbjct: 434  401

Query: 298  357
           
Sbjct: 494  401

Query: 358  376
           
Sbjct: 554  401

[Close]

BLAST of WMU43366 vs. TAIR10
Match: AT5G48430.1 (AT5G48430.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = -1


Query: 118 VPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIEDNLLEF 177
           VP IDL L N  VIW++  AN+M  V+D+V CL FV+GG     A++IG HQ+E+ L+EF
Sbjct: 321 VPRIDLELANG-VIWKLSPANAMKKVSDDVACLAFVNGGDAAAQAVMIGIHQMENTLVEF 380

Query: 178 DLASSRLGFSSTLLGRMTTCANF 237
           D+  S  GFSS+L     +C +F
Sbjct: 381 DVGRSAFGFSSSLGLVSASCGDF 402

Query: 238  297
           
Sbjct: 441  402

Query: 298  357
           
Sbjct: 501  402

Query: 358  367
           
Sbjct: 561  402

[Close]

BLAST of WMU43366 vs. Swiss-Prot
Match: 7SB1_SOYBN (Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 9.6e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = -1


Query: 103 PSIDLILQNKK-VIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIEDNLLEF 162
           PS+DL++      +WRI G + MV     V CLG ++GG++PR  I +GA Q+E+NL+ F
Sbjct: 338 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVF 397

Query: 163 DLASSRLGFS-STLLGRMTTCAN-FNFTSS 222
           DLA SR+GFS S+L      CA+ FNF ++
Sbjct: 398 DLARSRVGFSTSSLHSHGVKCADLFNFANA 427

Query: 223  282
           
Sbjct: 458  427

Query: 283  342
           
Sbjct: 518  427

Query: 343  364
           
Sbjct: 578  427

[Close]

BLAST of WMU43366 vs. Swiss-Prot
Match: 7SBG2_SOYBN (Basic 7S globulin 2 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-12
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = -1


Query: 103 PSIDLILQNKK-VIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIEDNLLEF 162
           PS+DL++      +WRI G + MV     V CLG ++GG++PR  + +G  Q+E+ L+ F
Sbjct: 344 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEVTLGTRQLEEKLMVF 403

Query: 163 DLASSRLGFS-STLLGRMTTCAN-FNFTSS 222
           DLA SR+GFS S+L      C + FNF ++
Sbjct: 404 DLARSRVGFSTSSLHSHGVKCGDLFNFANA 433

Query: 223  282
           
Sbjct: 464  433

Query: 283  342
           
Sbjct: 524  433

Query: 343  364
           
Sbjct: 584  433

[Close]

BLAST of WMU43366 vs. NCBI nr
Match: gi|659076502|ref|XP_008438715.1| (PREDICTED: basic 7S globulin-like [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLG G+PSIDLILQNKKVIWRIFGANSMV VND+VLCLGFVDGGVE RTAIVIGAHQ+E
Sbjct: 342 TRLGPGMPSIDLILQNKKVIWRIFGANSMVQVNDDVLCLGFVDGGVEARTAIVIGAHQME 401

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           DNLLEFDLA+SRLGFSSTLLGRMTTCANFNFTS+
Sbjct: 402 DNLLEFDLATSRLGFSSTLLGRMTTCANFNFTSA 435

Query: 223  282
           
Sbjct: 462  435

Query: 283  342
           
Sbjct: 522  435

Query: 343  385
           
Sbjct: 582  435

[Close]

BLAST of WMU43366 vs. NCBI nr
Match: gi|449432733|ref|XP_004134153.1| (PREDICTED: basic 7S globulin-like [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-41
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLG G+PSIDLILQNKKVIWRIFGANSMV VN+EVLCLGFVDGGVE RTAIVIGA+Q+E
Sbjct: 338 TRLGPGMPSIDLILQNKKVIWRIFGANSMVQVNEEVLCLGFVDGGVEARTAIVIGAYQME 397

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           DNLLEFDLA+SRLGFSSTLLGRMTTCANFNFTS+
Sbjct: 398 DNLLEFDLATSRLGFSSTLLGRMTTCANFNFTST 431

Query: 223  282
           
Sbjct: 458  431

Query: 283  342
           
Sbjct: 518  431

Query: 343  385
           
Sbjct: 578  431

[Close]

BLAST of WMU43366 vs. NCBI nr
Match: gi|659076508|ref|XP_008438718.1| (PREDICTED: basic 7S globulin-like [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLGAGVP+IDL+LQNKKVIW IFGANSMV VND+VLCLGFVDGGV+ RTAIVIGAHQIE
Sbjct: 341 TRLGAGVPTIDLVLQNKKVIWSIFGANSMVQVNDDVLCLGFVDGGVDVRTAIVIGAHQIE 400

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           D LLEFDLA+SRLGF+ TLLGRMTTCANFNFTS+
Sbjct: 401 DKLLEFDLATSRLGFTPTLLGRMTTCANFNFTSN 434

Query: 223  282
           
Sbjct: 461  434

Query: 283  342
           
Sbjct: 521  434

Query: 343  385
           
Sbjct: 581  434

[Close]

BLAST of WMU43366 vs. NCBI nr
Match: gi|449432735|ref|XP_004134154.1| (PREDICTED: basic 7S globulin-like [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = -1


Query: 103 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 162
           TRLGAGVP+IDL+LQNKKVIW +FGANSMV VNDEVLCLGFVDGGV+ RTAIVIGAHQIE
Sbjct: 341 TRLGAGVPTIDLVLQNKKVIWSMFGANSMVQVNDEVLCLGFVDGGVDVRTAIVIGAHQIE 400

Query: 163 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFTSS 222
           D LLEFDLA+SRLGF+ TLLGRMTTCANFNFTS+
Sbjct: 401 DKLLEFDLATSRLGFTPTLLGRMTTCANFNFTSN 434

Query: 223  282
           
Sbjct: 461  434

Query: 283  342
           
Sbjct: 521  434

Query: 343  385
           
Sbjct: 581  434

[Close]

BLAST of WMU43366 vs. NCBI nr
Match: gi|659076504|ref|XP_008438716.1| (PREDICTED: basic 7S globulin-like isoform X1 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 6.2e-37
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = -1


Query: 109 TRLGAGVPSIDLILQNKKVIWRIFGANSMVSVNDEVLCLGFVDGGVEPRTAIVIGAHQIE 168
           T LG GV SIDLILQNKKVIWR+FGANSMV VNDEVLCLGFVDGGVE +TA+VIGAHQIE
Sbjct: 334 TELGPGVASIDLILQNKKVIWRMFGANSMVLVNDEVLCLGFVDGGVEAKTAVVIGAHQIE 393

Query: 169 DNLLEFDLASSRLGFSSTLLGRMTTCANFNFT 228
           DNLLEFDLA+SRLGFSSTLLGR T CANFN +
Sbjct: 394 DNLLEFDLATSRLGFSSTLLGRNTNCANFNLS 425

Query: 229  288
           
Sbjct: 454  425

Query: 289  348
           
Sbjct: 514  425

Query: 349  385
           
Sbjct: 574  425

The following BLAST results are available for this feature:

BLAST of WMU43366 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03220.1	5.6e-36	72.34	Eukaryotic aspartyl protease family protein	[more]
AT1G03230.1	2.8e-35	71.28	Eukaryotic aspartyl protease family protein	[more]
AT5G19100.1	1.3e-21	58.33	Eukaryotic aspartyl protease family protein	[more]
AT5G19110.1	1.1e-15	42.05	Eukaryotic aspartyl protease family protein	[more]
AT5G48430.1	1.6e-14	48.19	Eukaryotic aspartyl protease family protein	[more]

BLAST of WMU43366 vs. Swiss-Prot


Match Name	E-value	Identity	Description
7SB1_SOYBN	9.6e-14	45.56	Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2	[more]
7SBG2_SOYBN	4.0e-12	41.11	Basic 7S globulin 2 OS=Glycine max PE=1 SV=1	[more]

BLAST of WMU43366 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076502\|ref\|XP_008438715.1\|	1.4e-41	91.49	PREDICTED: basic 7S globulin-like [Cucumis melo]	[more]
gi\|449432733\|ref\|XP_004134153.1\|	9.2e-41	90.43	PREDICTED: basic 7S globulin-like [Cucumis sativus]	[more]
gi\|659076508\|ref\|XP_008438718.1\|	1.3e-39	87.23	PREDICTED: basic 7S globulin-like [Cucumis melo]	[more]
gi\|449432735\|ref\|XP_004134154.1\|	1.3e-39	87.23	PREDICTED: basic 7S globulin-like [Cucumis sativus]	[more]
gi\|659076504\|ref\|XP_008438716.1\|	6.2e-37	85.87	PREDICTED: basic 7S globulin-like isoform X1 [Cucumis melo]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021660	Cla021660	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
SSH0000519	SSH0000519	EST
SSH0001915	SSH0001915	EST
SSH0003000	SSH0003000	EST