WMU43150 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43150
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	COP1-interactive protein 1
Location	Chr7 : 31186383 .. 31186904 (-)
Sequence length	524

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CACTCGGAAGCTTTAGACAATATACAAGAAGTAGAAAAGGCCATAGGAGCCCTGAGGATTGAAGCAGAAGCATTGGGTCTTGAAAAATCTAAATTTCTTCTCGAGATTGAAGAGCTGAGTCAGAAGTTGAGTGCTGCTGGTGAAATTCAATCTGAATTGAATGGGAGACTGAATGATATTGAAATAGAGAAGGAAACCTTGACCAAGGAGAAAGAGACTGCGTGGAGGAAAATTGAGGCAGGGGATAAAATTGTAGAAGAATTAAATGCCACAATTGATTCGTTGAAGAGGCAGTTAAGAGCTACAATTGAAGAAAAGGAAGCTCTAAACCTAGAACATGGGACAGCTTTGAGCAAAATAAATGAAGCAGAAAAGATCATAGCAGACATGAGAATTGAAGCAGAAAGATTCGGTGTAGAAAAATCTGAATTTCTTCTTAAGATTGAAGAACAGAACCAGAAGTTGAGTCTTGCTGAAAATTTAGAAGCAGATTTGAATAGGAAATTGAAAGACCTGGAAATAGG

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 26d library	4

Homology

[Close]

BLAST of WMU43150 vs. TAIR10
Match: AT5G41790.1 (AT5G41790.1 COP1-interactive protein 1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 253 VEELNATIDSLKRQLRATIEEKEALNLEHGTALSKINEAEKIIADMRIEAERFGVEKSEF 312
           +E  N  I  LK +L  T+EEKEA++ E   AL K+ E+E+I + +++E E+   EKS  
Sbjct: 135 IEAANLEIADLKGKLTTTVEEKEAVDSELELALMKLKESEEISSKLKLETEKLEDEKSIA 194

Query: 313 LLKIEEQNQKLSLAENLEADLNRKLKDLE 372
           L    E +QKL +A   E DLN+KL+D++
Sbjct: 195 LSDNRELHQKLEVAGKTETDLNQKLEDIK 223

Query: 373  432
           
Sbjct: 255  223

Query: 433  492
           
Sbjct: 315  223

Query: 493  520
           
Sbjct: 375  223

[Close]

BLAST of WMU43150 vs. TAIR10
Match: AT1G64330.1 (AT1G64330.1 myosin heavy chain-related)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 229 KIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKINEAEKIIADMRIEAER 288
           +IE   K +E+ N  I  LK +L  T E KEA+  EH   L K+ E+++I  ++R+E E+
Sbjct: 119 EIELLKKQMEDANLEIADLKMKLATTDEHKEAVESEHQEILKKLKESDEICGNLRVETEK 178

Query: 289 FGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDLE 348
              E  E        N+KL +A   E+DLN+KL+D++
Sbjct: 179 LTSENKEL-------NEKLEVAGETESDLNQKLEDVK 208

Query: 349  408
           
Sbjct: 239  208

Query: 409  468
           
Sbjct: 299  208

Query: 469  520
           
Sbjct: 359  208

[Close]

BLAST of WMU43150 vs. Swiss-Prot
Match: SMC_METJA (Chromosome partition protein Smc OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=smc PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 45/175 (25.71%), Postives = 77/175 (44.00%), Query Frame = 1


Query: 7   EALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQ----SELNGRLN 66
           E+ +N++ + +  G L+I      LEK K  L+  E+ + L+   EI      ELN +++
Sbjct: 794 ESDENLKRMNEIEGELKI------LEKEKAKLK-NEIDKGLTLVKEILIPKIEELNKKVS 853

Query: 67  DXXXXXXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALS 126
           +                  IE    I+EE     + L + L+   E+KE L  E  T   
Sbjct: 854 ELINKKVILEKNISFYKESIEKNLSILEEKRKRYEELAKNLKELTEKKEQLEKEIETLER 913

Query: 127 KINEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDLE 186
           +  E  + + D+        VEK+++  K+EE+ +KL L E ++     + KD+E
Sbjct: 914 ERREILRKVRDIENRINELMVEKAKYESKLEEEERKLYLCEKVDVSKELEKKDIE 961

Query: 187  246
           
Sbjct: 974  961

Query: 247  306
           
Sbjct: 1034  961

Query: 307  366
           
Sbjct: 1094  961

Query: 367  426
           
Sbjct: 1154  961

Query: 427  486
           
Sbjct: 1214  961

Query: 487  520
           
Sbjct: 1274  961

[Close]

BLAST of WMU43150 vs. NCBI nr
Match: gi|449464076|ref|XP_004149755.1| (PREDICTED: myosin-11 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 113/170 (66.47%), Postives = 130/170 (76.47%), Query Frame = 1


Query: 1   HSEALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQSELNGRLNDX 60
           H EAL+NIQEVEK IG LR+EAE+LGLEKSKFL++IE+LSQKLSAAGEIQSEL GRL D 
Sbjct: 284 HLEALNNIQEVEKVIGVLRVEAESLGLEKSKFLVDIEDLSQKLSAAGEIQSELKGRLKDI 343

Query: 61  XXXXXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKI 120
                        AWRKIEAGDKIVEELNATIDSLKRQL  TIEEKEALN +H   LS+ 
Sbjct: 344 EIEKETLTEEKETAWRKIEAGDKIVEELNATIDSLKRQLTTTIEEKEALNFQHLETLSRA 403

Query: 121 NEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLK 180
            EA+ I  D+++E+E + VEKS+ LL+IE+ NQKL  A  LEA LN KLK
Sbjct: 404 QEADTITRDLKVESETWSVEKSKLLLEIEDLNQKLDAAGKLEAQLNEKLK 453

Query: 181  240
           
Sbjct: 464  453

Query: 241  300
           
Sbjct: 524  453

Query: 301  360
           
Sbjct: 584  453

Query: 361  420
           
Sbjct: 644  453

Query: 421  480
           
Sbjct: 704  453

Query: 481  511
           
Sbjct: 764  453

[Close]

BLAST of WMU43150 vs. NCBI nr
Match: gi|659102128|ref|XP_008451966.1| (PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.8e-48
Identity = 113/170 (66.47%), Postives = 127/170 (74.71%), Query Frame = 1


Query: 1   HSEALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQSELNGRLNDX 60
           H EAL+NIQEVEK  G LR E EALGLEKSKFL++IE+LSQKLSAAGEIQSEL GRL D 
Sbjct: 54  HLEALNNIQEVEKVTGNLRAEVEALGLEKSKFLVDIEDLSQKLSAAGEIQSELKGRLKDI 113

Query: 61  XXXXXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKI 120
                        AWRKIEAGDKIVEELNATIDSLKRQL  TIEEKEALN +H   LS+ 
Sbjct: 114 EIEKETLTEEKETAWRKIEAGDKIVEELNATIDSLKRQLTTTIEEKEALNFQHLETLSRA 173

Query: 121 NEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLK 180
            EA+ I  D+R+E+E + VEKS+ LL+IE+ NQKL  A  LEA LN KLK
Sbjct: 174 QEADTITRDLRVESETWSVEKSKLLLEIEDLNQKLDAAGKLEAQLNEKLK 223

Query: 181  240
           
Sbjct: 234  223

Query: 241  300
           
Sbjct: 294  223

Query: 301  360
           
Sbjct: 354  223

Query: 361  420
           
Sbjct: 414  223

Query: 421  480
           
Sbjct: 474  223

Query: 481  511
           
Sbjct: 534  223

[Close]

BLAST of WMU43150 vs. NCBI nr
Match: gi|1000983617|ref|XP_015570514.1| (PREDICTED: intracellular protein transport protein USO1 isoform X2 [Ricinus communis])

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-20
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 1   HSEALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQSELNGRLNDX 60
           H   L  IQE E+ I  L++EAE L +E+ KF +E  EL Q L A G  + ELN RL + 
Sbjct: 337 HQTTLSRIQEAEEIIRNLKLEAERLDVEREKFSIENRELKQDLDAYGNKEKELNQRLEEI 396

Query: 61  XXXXXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKI 120
                                 K  + LN  +  LK +L AT EEKEA NLEH TALS+I
Sbjct: 397 ---------------------SKEKDNLNLEVADLKIKLTATTEEKEAFNLEHQTALSRI 456

Query: 121 NEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDL 180
            EAE+II ++++EAER   EK +  ++  E  Q L    N EA+LN+KL+++
Sbjct: 457 QEAEEIIRNLKLEAERLDAEKEKLSVENGELKQDLDAYGNTEAELNQKLEEM 487

Query: 181  240
           
Sbjct: 517  487

Query: 241  300
           
Sbjct: 577  487

Query: 301  360
           
Sbjct: 637  487

Query: 361  420
           
Sbjct: 697  487

Query: 421  480
           
Sbjct: 757  487

Query: 481  517
           
Sbjct: 817  487

[Close]

BLAST of WMU43150 vs. NCBI nr
Match: gi|255537725|ref|XP_002509929.1| (PREDICTED: intracellular protein transport protein USO1 isoform X1 [Ricinus communis])

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-20
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 1   HSEALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQSELNGRLNDX 60
           H   L  IQE E+ I  L++EAE L +E+ KF +E  EL Q L A G  + ELN RL + 
Sbjct: 519 HQTTLSRIQEAEEIIRNLKLEAERLDVEREKFSIENRELKQDLDAYGNKEKELNQRLEEI 578

Query: 61  XXXXXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKI 120
                                 K  + LN  +  LK +L AT EEKEA NLEH TALS+I
Sbjct: 579 ---------------------SKEKDNLNLEVADLKIKLTATTEEKEAFNLEHQTALSRI 638

Query: 121 NEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDL 180
            EAE+II ++++EAER   EK +  ++  E  Q L    N EA+LN+KL+++
Sbjct: 639 QEAEEIIRNLKLEAERLDAEKEKLSVENGELKQDLDAYGNTEAELNQKLEEM 669

Query: 181  240
           
Sbjct: 699  669

Query: 241  300
           
Sbjct: 759  669

Query: 301  360
           
Sbjct: 819  669

Query: 361  420
           
Sbjct: 879  669

Query: 421  480
           
Sbjct: 939  669

Query: 481  517
           
Sbjct: 999  669

[Close]

BLAST of WMU43150 vs. NCBI nr
Match: gi|1009156734|ref|XP_015896398.1| (PREDICTED: restin homolog [Ziziphus jujuba])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 1


Query: 10  ALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAGEIQSELNGRLNDXXXX 69
           AL  I+E EK    L+ EAE L +EKS+ L+E  EL+QKL+ AG ++ +LN RL D    
Sbjct: 173 ALSKIEETEKIASDLKSEAERLEIEKSELLIENRELNQKLNTAGNVEEDLNKRLEDLEIE 232

Query: 70  XXXXXXXXXXAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKINEA 129
                     A R+IE G+KI  +     D L  +     +E EA+  E      ++  A
Sbjct: 233 KDKLIKENEIAIRRIEEGEKIAADFRVMADQLNNEKETLGQELEAIREECSKKKQQLESA 292

Query: 130 EKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDLE 189
           E+I  +++ E +R  +EKSE L +  E   KL  A+ + ADL +KL+D E
Sbjct: 293 EEIARNLKSEGDRLDIEKSELLTQNTELKGKLENADKVVADLKQKLEDTE 342

Query: 190  249
           
Sbjct: 353  342

Query: 250  309
           
Sbjct: 413  342

Query: 310  369
           
Sbjct: 473  342

Query: 370  429
           
Sbjct: 533  342

Query: 430  489
           
Sbjct: 593  342

Query: 490  520
           
Sbjct: 653  342

The following BLAST results are available for this feature:

BLAST of WMU43150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41790.1	1.0e-11	41.57	COP1-interactive protein 1	[more]
AT1G64330.1	1.1e-10	37.11	myosin heavy chain-related	[more]

BLAST of WMU43150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMC_METJA	5.9e-06	25.71	Chromosome partition protein Smc OS=Methanocaldococcus jannaschii (strain ATCC 4...	[more]

BLAST of WMU43150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464076\|ref\|XP_004149755.1\|	2.5e-49	66.47	PREDICTED: myosin-11 [Cucumis sativus]	[more]
gi\|659102128\|ref\|XP_008451966.1\|	2.8e-48	66.47	PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform ...	[more]
gi\|1000983617\|ref\|XP_015570514.1\|	4.2e-20	40.70	PREDICTED: intracellular protein transport protein USO1 isoform X2 [Ricinus comm...	[more]
gi\|255537725\|ref\|XP_002509929.1\|	4.2e-20	40.70	PREDICTED: intracellular protein transport protein USO1 isoform X1 [Ricinus comm...	[more]
gi\|1009156734\|ref\|XP_015896398.1\|	1.1e-17	36.47	PREDICTED: restin homolog [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010924	Cla010924	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0064150	S1_0064150	EST
S1_0080275	S1_0080275	EST
S1_0083527	S1_0083527	EST
S3_0000434	S3_0000434	EST
S3_0103744	S3_0103744	EST
S3_0159244	S3_0159244	EST
S3_0159262	S3_0159262	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 148..168 score: -coord: 78..112 score: -coord: 50..70 score: -coord: 1..28 scor