WMU43007 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43007
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcriptional adapter ADA2
Location	Chr1 : 18634210 .. 18635232 (-)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTTAAGGATGCTGACGGCGAGGATGAGCGAGAGCTGAAAATGCGAGTGTTGCGTATATACTCGAAGAGGCTAGATGAGAGGAAGCGGAGAAAAGATTTTATACTACAAAGAAATTTACTTTATCCCAGTTCTTTTGAAAAGGAATTATCAGCTGAAGAGAGGGCAATATGTCGTCAATATGATGTCTTCATGCGTTTCCATTCTAAGGAAGAACACGAGGAATTGCTTCAAACAATTGTTGCAGAGCATCGGACCTTGAAAAGAATTCAAGAACTTAAGGAAGCCAGAGTGGCTGGCTGCCGTACACCGACTGAGGTAGAGATCTTTACACTCTTTCCCTACACGACGCTCTTCCGATCTTCAAGGGTTTGGGGAGCTTTGGTGTAAGGGGAGGGATTCAACACCACGGCATGCATATTGAAATTGAATTGAATTGAATCACTGTTCGTAGTCTGAATAAGGATGGATTGGATATCAGAATCGATGAACAGATTAAGAAAATTGAAGGCGTAATTGAAAAGCAAACAGAGTGTTTAAAAGTGTTTGTTCTTCTTCTCCTTCCTCACCGTTCCCCGCTTTTCAATACTTTTCTTCTTCTTCCCTCTAATTCCTCCCCGATTACATATCTTGCCTTCCTCACCGCTCACC

Library


Library category	ESTs
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU43007 vs. TAIR10
Match: AT4G16420.1 (AT4G16420.1 homolog of yeast ADA2 2B)

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-38
Identity = 72/107 (67.29%), Postives = 91/107 (85.05%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FK+ D  +E ELK+RVLRIYSKRLDERKRRK+FI++RNLLYP+ FEK+LS EE+  CR+ 
Sbjct: 257 FKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRRL 316

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVE 120
           DVFMRFHSKEEH+ELL+ +V+E+R +KR+++LKEA+VAGCR+  E E
Sbjct: 317 DVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAE 363

Query: 121  180
           
Sbjct: 377  363

Query: 181  240
           
Sbjct: 437  363

Query: 241  300
           
Sbjct: 497  363

Query: 301  322
           
Sbjct: 557  363

[Close]

BLAST of WMU43007 vs. TAIR10
Match: AT3G07740.4 (AT3G07740.4 homolog of yeast ADA2 2A)

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-34
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKD+D + ERE K++VLRIYSKRLDERKRRK+F+L+RNLLYP  +E  LSAEER I +  
Sbjct: 306 FKDSDTDAEREQKLQVLRIYSKRLDERKRRKEFVLERNLLYPDQYEMSLSAEERKIYKSC 365

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEIF 120
            VF RF SKEEH+EL++ ++ EH+ L+RI++L+EAR AGCRT ++   F
Sbjct: 366 KVFARFQSKEEHKELIKKVIEEHQILRRIEDLQEARTAGCRTTSDANRF 414

Query: 121  180
           
Sbjct: 426  414

Query: 181  240
           
Sbjct: 486  414

Query: 241  300
           
Sbjct: 546  414

Query: 301  328
           
Sbjct: 606  414

[Close]

BLAST of WMU43007 vs. Swiss-Prot
Match: TAD2B_ARATH (Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.1e-37
Identity = 72/107 (67.29%), Postives = 91/107 (85.05%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FK+ D  +E ELK+RVLRIYSKRLDERKRRK+FI++RNLLYP+ FEK+LS EE+  CR+ 
Sbjct: 257 FKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRRL 316

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVE 120
           DVFMRFHSKEEH+ELL+ +V+E+R +KR+++LKEA+VAGCR+  E E
Sbjct: 317 DVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAE 363

Query: 121  180
           
Sbjct: 377  363

Query: 181  240
           
Sbjct: 437  363

Query: 241  300
           
Sbjct: 497  363

Query: 301  322
           
Sbjct: 557  363

[Close]

BLAST of WMU43007 vs. Swiss-Prot
Match: TAD2A_ARATH (Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKD+D + ERE K++VLRIYSKRLDERKRRK+F+L+RNLLYP  +E  LSAEER I +  
Sbjct: 299 FKDSDTDAEREQKLQVLRIYSKRLDERKRRKEFVLERNLLYPDQYEMSLSAEERKIYKSC 358

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEIF 120
            VF RF SKEEH+EL++ ++ EH+ L+RI++L+EAR AGCRT ++   F
Sbjct: 359 KVFARFQSKEEHKELIKKVIEEHQILRRIEDLQEARTAGCRTTSDANRF 407

Query: 121  180
           
Sbjct: 419  407

Query: 181  240
           
Sbjct: 479  407

Query: 241  300
           
Sbjct: 539  407

Query: 301  328
           
Sbjct: 599  407

[Close]

BLAST of WMU43007 vs. Swiss-Prot
Match: TADA2_ORYSJ (Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 63/108 (58.33%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FK+ D E +RELK+RVLRIY  RLDERKRRK+FIL+RNLL+P+  EK+L+ E++ +  +Y
Sbjct: 302 FKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDLTNEDKEVYHRY 361

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEI 120
            VFMRF SKEEHE L+++++ E +  +RIQEL+E R AGCRT  E +I
Sbjct: 362 KVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECRSAGCRTLAEAKI 409

Query: 121  180
           
Sbjct: 422  409

Query: 181  240
           
Sbjct: 482  409

Query: 241  300
           
Sbjct: 542  409

Query: 301  325
           
Sbjct: 602  409

[Close]

BLAST of WMU43007 vs. NCBI nr
Match: gi|449443500|ref|XP_004139515.1| (PREDICTED: transcriptional adapter ADA2b [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY
Sbjct: 308 FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 367

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEIF 120
           DVFMRFHSKEEHEELLQTIVAEHRTLKRIQ+LKEAR+AG RTP E EIF
Sbjct: 368 DVFMRFHSKEEHEELLQTIVAEHRTLKRIQDLKEARLAGYRTPAEAEIF 416

Query: 121  180
           
Sbjct: 428  416

Query: 181  240
           
Sbjct: 488  416

Query: 241  300
           
Sbjct: 548  416

Query: 301  328
           
Sbjct: 608  416

[Close]

BLAST of WMU43007 vs. NCBI nr
Match: gi|659128589|ref|XP_008464277.1| (PREDICTED: transcriptional adapter ADA2b isoform X1 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 4.5e-48
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY
Sbjct: 243 FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 302

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEIF 120
           DVFMRFHSKEEHEELLQTIVAEHRTLKRI +LKEAR+AG RTP E EIF
Sbjct: 303 DVFMRFHSKEEHEELLQTIVAEHRTLKRIHDLKEARLAGYRTPAEAEIF 351

Query: 121  180
           
Sbjct: 363  351

Query: 181  240
           
Sbjct: 423  351

Query: 241  300
           
Sbjct: 483  351

Query: 301  328
           
Sbjct: 543  351

[Close]

BLAST of WMU43007 vs. NCBI nr
Match: gi|659128591|ref|XP_008464278.1| (PREDICTED: transcriptional adapter ADA2b isoform X2 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 4.5e-48
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY
Sbjct: 188 FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 247

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVEIF 120
           DVFMRFHSKEEHEELLQTIVAEHRTLKRI +LKEAR+AG RTP E EIF
Sbjct: 248 DVFMRFHSKEEHEELLQTIVAEHRTLKRIHDLKEARLAGYRTPAEAEIF 296

Query: 121  180
           
Sbjct: 308  296

Query: 181  240
           
Sbjct: 368  296

Query: 241  300
           
Sbjct: 428  296

Query: 301  328
           
Sbjct: 488  296

[Close]

BLAST of WMU43007 vs. NCBI nr
Match: gi|802681932|ref|XP_012082181.1| (PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas])

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKD D EDERELK+RVLRIY+KRLDERKRRKDFIL+RNLLYP+ FEK+LS EERA+CR+Y
Sbjct: 317 FKDTDTEDERELKLRVLRIYAKRLDERKRRKDFILERNLLYPNVFEKDLSPEERALCRRY 376

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVE 120
           DVFMRFHSKEEHE+LLQT++AEHRTLKRIQELKEAR AGCRT  E +
Sbjct: 377 DVFMRFHSKEEHEDLLQTVIAEHRTLKRIQELKEARAAGCRTSAEAD 423

Query: 121  180
           
Sbjct: 437  423

Query: 181  240
           
Sbjct: 497  423

Query: 241  300
           
Sbjct: 557  423

Query: 301  322
           
Sbjct: 617  423

[Close]

BLAST of WMU43007 vs. NCBI nr
Match: gi|802681944|ref|XP_012082182.1| (PREDICTED: transcriptional adapter ADA2b isoform X2 [Jatropha curcas])

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 1   FKDADGEDERELKMRVLRIYSKRLDERKRRKDFILQRNLLYPSSFEKELSAEERAICRQY 60
           FKD D EDERELK+RVLRIY+KRLDERKRRKDFIL+RNLLYP+ FEK+LS EERA+CR+Y
Sbjct: 279 FKDTDTEDERELKLRVLRIYAKRLDERKRRKDFILERNLLYPNVFEKDLSPEERALCRRY 338

Query: 61  DVFMRFHSKEEHEELLQTIVAEHRTLKRIQELKEARVAGCRTPTEVE 120
           DVFMRFHSKEEHE+LLQT++AEHRTLKRIQELKEAR AGCRT  E +
Sbjct: 339 DVFMRFHSKEEHEDLLQTVIAEHRTLKRIQELKEARAAGCRTSAEAD 385

Query: 121  180
           
Sbjct: 399  385

Query: 181  240
           
Sbjct: 459  385

Query: 241  300
           
Sbjct: 519  385

Query: 301  322
           
Sbjct: 579  385

The following BLAST results are available for this feature:

BLAST of WMU43007 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16420.1	3.5e-38	67.29	homolog of yeast ADA2 2B	[more]
AT3G07740.4	8.8e-34	60.55	homolog of yeast ADA2 2A	[more]

BLAST of WMU43007 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAD2B_ARATH	6.1e-37	67.29	Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1	[more]
TAD2A_ARATH	1.6e-32	60.55	Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1 SV=1	[more]
TADA2_ORYSJ	3.3e-30	58.33	Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2	[more]

BLAST of WMU43007 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443500\|ref\|XP_004139515.1\|	1.2e-48	95.41	PREDICTED: transcriptional adapter ADA2b [Cucumis sativus]	[more]
gi\|659128589\|ref\|XP_008464277.1\|	4.5e-48	94.50	PREDICTED: transcriptional adapter ADA2b isoform X1 [Cucumis melo]	[more]
gi\|659128591\|ref\|XP_008464278.1\|	4.5e-48	94.50	PREDICTED: transcriptional adapter ADA2b isoform X2 [Cucumis melo]	[more]
gi\|802681932\|ref\|XP_012082181.1\|	4.8e-42	82.24	PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]	[more]
gi\|802681944\|ref\|XP_012082182.1\|	4.8e-42	82.24	PREDICTED: transcriptional adapter ADA2b isoform X2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010968	Cla010968	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S4_0128515	S4_0128515	EST
S4_0134484	S4_0134484	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12374	TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED	coord: 1..109 score: 6.5
None	No IPR available	PANTHER	PTHR12374:SF23	TRANSCRIPTIONAL ADAPTER ADA2A	coord: 1..109 score: 6.5