WMU42992 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU42992
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein-protein interaction regulator
Location	Chr5 : 10425218 .. 10426845 (-)
Sequence length	798

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGGGAATACTTTTTCTTCGATGGAGCGAGCACCATAAGAAACTTTGCAATTTTATAAGGACAAAGACTGAACCTTCAATTTATTACTTGCCAAATAAACCATTGGACGAGGATGCAACCTTTCCTGAGCAGCGAAGAGATGAGGCTTTTATGGAGTGGAAAGCCTCCAGAAGGGAGGAGTTATCTGAGTATCAGAAACAGATAGGAGAACAGTATATTGCAAATGTTGAGAAGGACTTGGAAAGGTGGCAAAATGCCAGGAGGGCAAGAAAAGGAAATAACGACGTATTGAATTTGCAGGAAACCATGGACAAAGAATTGGATACCCATAGACTTGAGCATGGTCCAAAGAAAAGGAACATCCCTGGCGGTAGCAACAATGAGGACGAGGATGACGTGGAAGATATTAATGTTGGGGAGGATGACATGATAGATGACGTACTTGGTGTTGAAGATAATGGGCGCAGGGGGGAGGAAACAGCAAAACCCGAAGCTGATGTCGCGAGTCCAAAAGCTGATAATACTGTGCAGTAGAAGCTGTAAGTACCTATTTGATTTCATGTAGTAGTCCTATGTTTGTGTTTGTATCTGACCTTGATTTGTCTTACTAGTTTTATTCTTGCTTTTTAAATTATTGTTTTGCGTTTTTTTAAATCGTACCAATGGGTTCCACACACACTCTTTCATTCTACTTTTTCACAGCCTTCATAGAATTTGGTAGTATGCTTAGTCACCAAGTTTGTTGAAGCATGACTTGTAAAAATTCTCAACTTCTTTCAAGTCATGACATCAGAAACG

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	2
watermelon fruit 34d library	3

Homology

[Close]

BLAST of WMU42992 vs. TAIR10
Match: AT1G15200.3 (AT1G15200.3 protein-protein interaction regulator family protein)

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-39
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 58  RTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELSEYQKQIGEQYIANVEKD 117
           RTK EP IYY P KPL+ED +  EQ+++  F+EWKA+RR+E+SEYQK+I EQ + NVEK+
Sbjct: 308 RTKAEPRIYYAPVKPLEEDTSEVEQQKERTFLEWKAARRQEVSEYQKEIEEQCLGNVEKE 367

Query: 118 LERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 177
           LERWQNAR+ARK NN+ +NLQETMDKEL+THR+EHGPKKR IP
Sbjct: 368 LERWQNARKARKANNEGMNLQETMDKELETHRMEHGPKKRKIP 410

Query: 178  237
           
Sbjct: 428  410

Query: 238  297
           
Sbjct: 488  410

Query: 298  357
           
Sbjct: 548  410

Query: 358  367
           
Sbjct: 608  410

HSP 2 Score: 73.6 bits (179), Expect = 2.1e-13
Identity = 58/167 (34.73%), Postives = 71/167 (42.51%), Query Frame = 1


Query: 7   ILFLRWSEHHKKLCNFIRTKTE-------PSIYYLPNKPLDED----ATFPEQRRDEAFM 66
           +LFL+WSEH KKL NFI  +           I+Y   K +  D    A      R     
Sbjct: 244 LLFLQWSEHQKKLSNFISDEIANCYVFHLQVIFYFGPKSVHIDNFIEAKISFHSRAYKGN 303

Query: 67  EWKASRREELSEYQKQIG--EQYIANVEKDLER----WQNARR----------------- 126
            W    + E   Y   +   E+  + VE+  ER    W+ ARR                 
Sbjct: 304 VWCYRTKAEPRIYYAPVKPLEEDTSEVEQQKERTFLEWKAARRQEVSEYQKEIEEQCLGN 363

Query: 127 -------------ARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 186
                        ARK NN+ +NLQETMDKEL+THR+EHGPKKR IP
Sbjct: 364 VEKELERWQNARKARKANNEGMNLQETMDKELETHRMEHGPKKRKIP 410

Query: 187  246
           
Sbjct: 424  410

Query: 247  306
           
Sbjct: 484  410

Query: 307  366
           
Sbjct: 544  410

[Close]

BLAST of WMU42992 vs. NCBI nr
Match: gi|449445862|ref|XP_004140691.1| (PREDICTED: pinin [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 8.2e-76
Identity = 146/175 (83.43%), Postives = 151/175 (86.29%), Query Frame = 1


Query: 7   ILFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELS 66
           +LFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDAT  EQ+RDEAFMEWKASRREELS
Sbjct: 250 LLFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDATLAEQQRDEAFMEWKASRREELS 309

Query: 67  EYQKQIGEQYIANVEKDLERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 126
           EYQKQIGEQYIANVEKDLERWQNARRARKG+NDV NLQETMDKELDTHRLEHGPKKRNIP
Sbjct: 310 EYQKQIGEQYIANVEKDLERWQNARRARKGSNDVSNLQETMDKELDTHRLEHGPKKRNIP 369

Query: 127 XXXXXXXXXXXXXXXXXXXXMIDDVLGVEDNGRRGEETAKPEADVASPKADNTVQ 186
                               MIDDVL VE+NGRRGEETAKPEADVASPKAD+TVQ
Sbjct: 370 GGSNNEDEDDVEDINVGEDDMIDDVLDVEENGRRGEETAKPEADVASPKADDTVQ 424

Query: 187  246
           
Sbjct: 430  424

Query: 247  306
           
Sbjct: 490  424

Query: 307  366
           
Sbjct: 550  424

Query: 367  426
           
Sbjct: 610  424

Query: 427  486
           
Sbjct: 670  424

Query: 487  532
           
Sbjct: 730  424

[Close]

BLAST of WMU42992 vs. NCBI nr
Match: gi|659112199|ref|XP_008456110.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496147 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 131/160 (81.88%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 52  FIRTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELSEYQKQIGEQYIANVE 111
           F RTKTEPSIYYLPNKPLDEDAT  EQ+RDEAFMEWKASRREELSEYQKQIGEQYIANVE
Sbjct: 314 FSRTKTEPSIYYLPNKPLDEDATLAEQQRDEAFMEWKASRREELSEYQKQIGEQYIANVE 373

Query: 112 KDLERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIPXXXXXXXXXXXXXXX 171
           KDLERWQNARRARKG+NDV NLQETMDKELDTHRLEHGPKKR IP               
Sbjct: 374 KDLERWQNARRARKGSNDVSNLQETMDKELDTHRLEHGPKKRTIPGGSNNEDEDDVEDIN 433

Query: 172 XXXXXMIDDVLGVEDNGRRGEETAKPEADVASPKADNTVQ 231
                MIDDVL VEDNGRRGEETAKPEADVASPKAD+TVQ
Sbjct: 434 VGEDDMIDDVLDVEDNGRRGEETAKPEADVASPKADDTVQ 473

Query: 232  291
           
Sbjct: 494  473

Query: 292  351
           
Sbjct: 554  473

Query: 352  411
           
Sbjct: 614  473

Query: 412  471
           
Sbjct: 674  473

Query: 472  531
           
Sbjct: 734  473

[Close]

BLAST of WMU42992 vs. NCBI nr
Match: gi|590683335|ref|XP_007041572.1| (protein interaction regulator family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 120/175 (68.57%), Postives = 135/175 (77.14%), Query Frame = 1


Query: 7   ILFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELS 66
           +LFL+WSEH KKL NFIRTKTEP IYYLP KPLDEDAT  +QR+++ F+EWK +RREELS
Sbjct: 246 LLFLQWSEHRKKLSNFIRTKTEPPIYYLPTKPLDEDATIHDQRKEQEFLEWKTARREELS 305

Query: 67  EYQKQIGEQYIANVEKDLERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 126
           EYQKQIGEQY+ANVEK+LERWQNAR+ARK NND +NLQETMDKELDTHRLEHGPKKR IP
Sbjct: 306 EYQKQIGEQYVANVEKELERWQNARKARKANND-MNLQETMDKELDTHRLEHGPKKRKIP 365

Query: 127 XXXXXXXXXXXXXXXXXXXXMIDDVLGVEDNGRRGEETAKPEADVASPKADNTVQ 186
                               M+DDVL V+DNGRRG+ETAK E D  SP  DN  Q
Sbjct: 366 -GGNNEDEEDVEDINVGEDDMMDDVLDVDDNGRRGDETAKAEPDHTSPPPDNVDQ 418

Query: 187  246
           
Sbjct: 426  418

Query: 247  306
           
Sbjct: 486  418

Query: 307  366
           
Sbjct: 546  418

Query: 367  426
           
Sbjct: 606  418

Query: 427  486
           
Sbjct: 666  418

Query: 487  532
           
Sbjct: 726  418

[Close]

BLAST of WMU42992 vs. NCBI nr
Match: gi|590683343|ref|XP_007041574.1| (protein interaction regulator family protein isoform 4 [Theobroma cacao])

HSP 1 Score: 236.9 bits (603), Expect = 4.1e-59
Identity = 120/175 (68.57%), Postives = 135/175 (77.14%), Query Frame = 1


Query: 7   ILFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELS 66
           +LFL+WSEH KKL NFIRTKTEP IYYLP KPLDEDAT  +QR+++ F+EWK +RREELS
Sbjct: 177 LLFLQWSEHRKKLSNFIRTKTEPPIYYLPTKPLDEDATIHDQRKEQEFLEWKTARREELS 236

Query: 67  EYQKQIGEQYIANVEKDLERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 126
           EYQKQIGEQY+ANVEK+LERWQNAR+ARK NND +NLQETMDKELDTHRLEHGPKKR IP
Sbjct: 237 EYQKQIGEQYVANVEKELERWQNARKARKANND-MNLQETMDKELDTHRLEHGPKKRKIP 296

Query: 127 XXXXXXXXXXXXXXXXXXXXMIDDVLGVEDNGRRGEETAKPEADVASPKADNTVQ 186
                               M+DDVL V+DNGRRG+ETAK E D  SP  DN  Q
Sbjct: 297 -GGNNEDEEDVEDINVGEDDMMDDVLDVDDNGRRGDETAKAEPDHTSPPPDNVDQ 349

Query: 187  246
           
Sbjct: 357  349

Query: 247  306
           
Sbjct: 417  349

Query: 307  366
           
Sbjct: 477  349

Query: 367  426
           
Sbjct: 537  349

Query: 427  486
           
Sbjct: 597  349

Query: 487  532
           
Sbjct: 657  349

[Close]

BLAST of WMU42992 vs. NCBI nr
Match: gi|658043953|ref|XP_008357618.1| (PREDICTED: pinin-like [Malus domestica])

HSP 1 Score: 234.6 bits (597), Expect = 2.0e-58
Identity = 115/171 (67.25%), Postives = 132/171 (77.19%), Query Frame = 1


Query: 7   ILFLRWSEHHKKLCNFIRTKTEPSIYYLPNKPLDEDATFPEQRRDEAFMEWKASRREELS 66
           +LFL+WSEH+K+L NFIRTK EP IYYLP KPL+EDA   EQR+++ F+ WKA+RREEL+
Sbjct: 248 LLFLQWSEHNKRLGNFIRTKAEPPIYYLPKKPLEEDAALAEQRKEKEFLAWKAARREELT 307

Query: 67  EYQKQIGEQYIANVEKDLERWQNARRARKGNNDVLNLQETMDKELDTHRLEHGPKKRNIP 126
           EYQKQIGEQYIANVEK+LERWQNAR+ RK NNDV+NLQETMDKELDTHRLEHGPKKR IP
Sbjct: 308 EYQKQIGEQYIANVEKELERWQNARKPRKANNDVMNLQETMDKELDTHRLEHGPKKRTIP 367

Query: 127 XXXXXXXXXXXXXXXXXXXXMIDDVLGVEDNGRRGEETAKPEADVASPKAD 186
                               MIDDVL V+DN RRG+E AKP+A   SP AD
Sbjct: 368 DGSNNEDEDDVEDINVAEDYMIDDVLDVDDNNRRGDEIAKPDAGNTSPNAD 418

Query: 187  246
           
Sbjct: 428  418

Query: 247  306
           
Sbjct: 488  418

Query: 307  366
           
Sbjct: 548  418

Query: 367  426
           
Sbjct: 608  418

Query: 427  486
           
Sbjct: 668  418

Query: 487  520
           
Sbjct: 728  418

The following BLAST results are available for this feature:

BLAST of WMU42992 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15200.3	6.6e-39	68.93	protein-protein interaction regulator family protein	[more]

BLAST of WMU42992 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445862\|ref\|XP_004140691.1\|	8.2e-76	83.43	PREDICTED: pinin [Cucumis sativus]	[more]
gi\|659112199\|ref\|XP_008456110.1\|	1.1e-64	81.88	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496147 [Cucumis me...	[more]
gi\|590683335\|ref\|XP_007041572.1\|	4.1e-59	68.57	protein interaction regulator family protein isoform 2 [Theobroma cacao]	[more]
gi\|590683343\|ref\|XP_007041574.1\|	4.1e-59	68.57	protein interaction regulator family protein isoform 4 [Theobroma cacao]	[more]
gi\|658043953\|ref\|XP_008357618.1\|	2.0e-58	67.25	PREDICTED: pinin-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006786	Pinin_SDK_MemA

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013057	Cla013057	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0033596	S1_0033596	EST
S2_0144659	S2_0144659	EST
S2_0173841	S2_0173841	EST
S4_0032564	S4_0032564	EST
S4_0062480	S4_0062480	EST
S4_0132421	S4_0132421	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006786	Pinin/SDK/MemA protein	PFAM	PF04696	Pinin_SDK_memA	coord: 4..44 score: 1.2
None	No IPR available	PANTHER	PTHR12707	PINN	coord: 4..174 score: 2.4
None	No IPR available	PANTHER	PTHR12707:SF0	PININ	coord: 4..174 score: 2.4