WMU42608 (transcribed_cluster) Watermelon (97103) v1

NameWMU42608
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA/RNA-binding KIN17
LocationChr1 : 12907135 .. 12907419 (+)
Sequence length297
The following sequences are available for this feature:

transcribed_cluster sequence

TCCTATTTACGGTCAAGAAGAATTGGAAACAGTGATACCACAAATTGGTGGCTTAGTAAAGATTGTAAATGGGGCGTATCGAGGATCAAATGCTAGGTTGTTGGGCGTTGATACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAGGGGTGTGTATGATGGCAGGGTACTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAACTTTCATATATAAGAGAAAACTCCCCTATTTGTAGTTTTGTTCTCAATATTTTTTTGTTCTAGTATGAGATTTGATGTCTTCC
BLAST of WMU42608 vs. TAIR10
Match: AT1G55460.1 (AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region)

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           Q+ELETV+PQIGG+VKIVNGAYRGSNARLLGVDT+KFCAKVQIE+GVYDGRV+K++EYED
Sbjct: 347 QKELETVLPQIGGMVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGVYDGRVIKSIEYED 406

Query: 74  ICKLA 133
           ICKLA
Sbjct: 407 ICKLA 411

Query: 134 193
           
Sbjct: 467 411

Query: 194 209
           
Sbjct: 527 411

BLAST of WMU42608 vs. TAIR10
Match: AT5G51795.1 (AT5G51795.1 DNA/RNA-binding protein Kin17, conserved region)

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           Q EL+TV+PQIGG+VKIVNGAYRGSN RLL +DT+KFCAKVQIE+GVYDGRV+K++EYED
Sbjct: 283 QVELKTVLPQIGGMVKIVNGAYRGSNTRLLDLDTEKFCAKVQIEKGVYDGRVIKSIEYED 342

Query: 74  ICKLA 133
           ICKLA
Sbjct: 343 ICKLA 347

Query: 134 193
           
Sbjct: 403 347

Query: 194 209
           
Sbjct: 463 347

BLAST of WMU42608 vs. Swiss-Prot
Match: KIN17_MOUSE (DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           Q  LETVIP  G  V ++NG YRG+   L  ++   F A + IE G   GR ++ ++YED
Sbjct: 327 QTHLETVIPAPGKRVLVLNGGYRGNEGTLESINEKAFSATIVIETGPLKGRRVEGIQYED 386

Query: 74  ICKLA 133
           I KLA
Sbjct: 387 ISKLA 391

Query: 134 193
           
Sbjct: 447 391

Query: 194 209
           
Sbjct: 507 391

BLAST of WMU42608 vs. Swiss-Prot
Match: KIN17_HUMAN (DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           Q  LETVIP  G  + ++NG YRG+   L  ++   F A + IE G   GR ++ ++YED
Sbjct: 329 QTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYED 388

Query: 74  ICKLA 133
           I KLA
Sbjct: 389 ISKLA 393

Query: 134 193
           
Sbjct: 449 393

Query: 194 209
           
Sbjct: 509 393

BLAST of WMU42608 vs. NCBI nr
Match: gi|449455862|ref|XP_004145669.1| (PREDICTED: DNA/RNA-binding protein KIN17 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           QEELETVIPQIGGLV+IVNGAYRGSNARLLGVDTDKFCAKVQIE+GVYDGRVLKAVEYED
Sbjct: 332 QEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYED 391

Query: 74  ICKLAS 133
           ICKLAS
Sbjct: 392 ICKLAS 397

Query: 134 193
           
Sbjct: 452 397

Query: 194 212
           
Sbjct: 512 397

BLAST of WMU42608 vs. NCBI nr
Match: gi|659098345|ref|XP_008450093.1| (PREDICTED: DNA/RNA-binding protein KIN17 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-28
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           QEELETVIPQIGGLV+IVNGAYRGSNARLL VDTDKFCAKVQIE+GVYDGRVLKAVEYED
Sbjct: 332 QEELETVIPQIGGLVRIVNGAYRGSNARLLSVDTDKFCAKVQIEKGVYDGRVLKAVEYED 391

Query: 74  ICKLAS 133
           ICKLAS
Sbjct: 392 ICKLAS 397

Query: 134 193
           
Sbjct: 452 397

Query: 194 212
           
Sbjct: 512 397

BLAST of WMU42608 vs. NCBI nr
Match: gi|224098413|ref|XP_002311165.1| (Kin17 DNA-binding family protein [Populus trichocarpa])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDT+KFCAKVQIE+G+YDGRVLKAVEYED
Sbjct: 332 QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGIYDGRVLKAVEYED 391

Query: 74  ICKLA 133
           ICKLA
Sbjct: 392 ICKLA 396

Query: 134 193
           
Sbjct: 452 396

Query: 194 209
           
Sbjct: 512 396

BLAST of WMU42608 vs. NCBI nr
Match: gi|743844394|ref|XP_011027191.1| (PREDICTED: DNA/RNA-binding protein KIN17 [Populus euphratica])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDT+KFCAKVQIE+G+YDGRVLKAVEYED
Sbjct: 337 QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGIYDGRVLKAVEYED 396

Query: 74  ICKLA 133
           ICKLA
Sbjct: 397 ICKLA 401

Query: 134 193
           
Sbjct: 457 401

Query: 194 209
           
Sbjct: 517 401

BLAST of WMU42608 vs. NCBI nr
Match: gi|224112785|ref|XP_002316291.1| (Kin17 DNA-binding family protein [Populus trichocarpa])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 2

Query: 14  QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIERGVYDGRVLKAVEYED 73
           QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDT+KFCAKVQIE+G+YDGRVLKAVEYED
Sbjct: 336 QEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGIYDGRVLKAVEYED 395

Query: 74  ICKLA 133
           ICKLA
Sbjct: 396 ICKLA 400

Query: 134 193
           
Sbjct: 456 400

Query: 194 209
           
Sbjct: 516 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G55460.16.6e-2987.69 DNA/RNA-binding protein Kin17, conserved region[more]
AT5G51795.11.8e-2681.54 DNA/RNA-binding protein Kin17, conserved region[more]
Match NameE-valueIdentityDescription
KIN17_MOUSE1.0e-0744.62DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=1 SV=1[more]
KIN17_HUMAN1.3e-0743.08DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2[more]
Match NameE-valueIdentityDescription
gi|449455862|ref|XP_004145669.1|1.1e-2896.97PREDICTED: DNA/RNA-binding protein KIN17 [Cucumis sativus][more]
gi|659098345|ref|XP_008450093.1|5.3e-2895.45PREDICTED: DNA/RNA-binding protein KIN17 [Cucumis melo][more]
gi|224098413|ref|XP_002311165.1|6.9e-2895.38Kin17 DNA-binding family protein [Populus trichocarpa][more]
gi|743844394|ref|XP_011027191.1|6.9e-2895.38PREDICTED: DNA/RNA-binding protein KIN17 [Populus euphratica][more]
gi|224112785|ref|XP_002316291.1|6.9e-2895.38Kin17 DNA-binding family protein [Populus trichocarpa][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla003428Cla003428gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0067307S3_0067307EST
S3_0087696S3_0087696EST
S3_0102434S3_0102434EST
S4_0085939S4_0085939EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12805KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOGcoord: 6..71
score: 2.3
NoneNo IPR availablePANTHERPTHR12805:SF0DNA/RNA-BINDING PROTEIN KIN17coord: 6..71
score: 2.3