WMU42409 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU42409
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPectinesterase
LocationChr5 : 2210167 .. 2210433 (+)
Sequence length269
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCAAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTTCACCTCCGGCCTCTGATTTGGTTTCGTTCTTCTCTGCTTTACTATATTTTGTATGTATTCTTAAATATTAATAATCGTTATTTGTTAAATTAAACTTAAAATCAAGTTTCTCATTAAGAAATTAGATTTAATTATAATT
Homology
[Close]
BLAST of WMU42409 vs. TAIR10
Match: AT3G47400.1 (AT3G47400.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-13
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST  RV+WKG+H ITS A AS+FTVG+ IAGGSWLP+TGVPF
Sbjct: 548 SSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPF 590

Query: 62   121
           
Sbjct: 608  590

Query: 122  131
           
Sbjct: 668  590

[Close]
BLAST of WMU42409 vs. TAIR10
Match: AT3G14310.1 (AT3G14310.1 pectin methylesterase 3)

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-13
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFHL 61
           A TANRVKW+G+ VIT+AAEA K+T G FI GG WL STG PF L
Sbjct: 546 AGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSL 590

Query: 62   121
           
Sbjct: 606  590

Query: 122  137
           
Sbjct: 666  590

[Close]
BLAST of WMU42409 vs. TAIR10
Match: AT1G53830.1 (AT1G53830.1 pectin methylesterase 2)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 32/45 (71.11%), Postives = 30/45 (66.67%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFHL 61
           A TANRVKWKGY VITS  EA  FT G FI GG WL STG PF L
Sbjct: 541 AGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSL 585

Query: 62   121
           
Sbjct: 601  585

Query: 122  137
           
Sbjct: 661  585

[Close]
BLAST of WMU42409 vs. TAIR10
Match: AT5G53370.1 (AT5G53370.1 pectin methylesterase PCR fragment F)

HSP 1 Score: 67.0 bits (162), Expect = 6.6e-12
Identity = 30/38 (78.95%), Postives = 29/38 (76.32%), Query Frame = 2 

Query: 17  RVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 76
           RVKW GYHVITS  EASKFTV  FI+G SWLPSTGV F
Sbjct: 544 RVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSF 581

Query: 77   131
           
Sbjct: 604  581

[Close]
BLAST of WMU42409 vs. TAIR10
Match: AT5G51490.1 (AT5G51490.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 63.2 bits (152), Expect = 9.6e-11
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST  RV WKG+HV+  A++AS FTVG FIAG +WLP TG+PF
Sbjct: 490 SSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPF 532

Query: 62   121
           
Sbjct: 550  532

Query: 122  131
           
Sbjct: 610  532

[Close]
BLAST of WMU42409 vs. Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +STANRVKW+GYHV+TS ++ S+FTVGNFIAG SWLP+T VPF
Sbjct: 464 SSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPF 506

Query: 62   121
           
Sbjct: 524  506

Query: 122  131
           
Sbjct: 584  506

[Close]
BLAST of WMU42409 vs. Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST  RV+WKG+H ITS A AS+FTVG+ IAGGSWLP+TGVPF
Sbjct: 548 SSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPF 590

Query: 62   121
           
Sbjct: 608  590

Query: 122  131
           
Sbjct: 668  590

[Close]
BLAST of WMU42409 vs. Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFHL 61
           A TANRVKW+G+ VIT+AAEA K+T G FI GG WL STG PF L
Sbjct: 546 AGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSL 590

Query: 62   121
           
Sbjct: 606  590

Query: 122  137
           
Sbjct: 666  590

[Close]
BLAST of WMU42409 vs. Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 32/45 (71.11%), Postives = 30/45 (66.67%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFHL 61
           A TANRVKWKGY VITS  EA  FT G FI GG WL STG PF L
Sbjct: 541 AGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSL 585

Query: 62   121
           
Sbjct: 601  585

Query: 122  137
           
Sbjct: 661  585

[Close]
BLAST of WMU42409 vs. Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 30/38 (78.95%), Postives = 29/38 (76.32%), Query Frame = 2 

Query: 17  RVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 76
           RVKW GYHVITS  EASKFTV  FI+G SWLPSTGV F
Sbjct: 544 RVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSF 581

Query: 77   131
           
Sbjct: 604  581

[Close]
BLAST of WMU42409 vs. NCBI nr
Match: gi|449432283|ref|XP_004133929.1| (PREDICTED: pectinesterase 2 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           ASTANRV WKGYHVITSA+EASKFTVGNFIAGGSWLPSTGVPF
Sbjct: 463 ASTANRVNWKGYHVITSASEASKFTVGNFIAGGSWLPSTGVPF 505

Query: 62   121
           
Sbjct: 523  505

Query: 122  131
           
Sbjct: 583  505

[Close]
BLAST of WMU42409 vs. NCBI nr
Match: gi|659075527|ref|XP_008438193.1| (PREDICTED: pectinesterase 2 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           ASTANRV WKGY VITSAAEASKFTVGNFIAGGSWLPSTGVPF
Sbjct: 465 ASTANRVNWKGYRVITSAAEASKFTVGNFIAGGSWLPSTGVPF 507

Query: 62   121
           
Sbjct: 525  507

Query: 122  131
           
Sbjct: 585  507

[Close]
BLAST of WMU42409 vs. NCBI nr
Match: gi|702340966|ref|XP_010056340.1| (PREDICTED: pectinesterase 2-like [Eucalyptus grandis])

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST NRVKW GYHVITSA EASKFTVGNFIAGGSWLP+TGVP+
Sbjct: 462 SSTTNRVKWIGYHVITSATEASKFTVGNFIAGGSWLPATGVPY 504

Query: 62   121
           
Sbjct: 522  504

Query: 122  131
           
Sbjct: 582  504

[Close]
BLAST of WMU42409 vs. NCBI nr
Match: gi|1012335149|gb|KYP46488.1| (Pectinesterase 2 [Cajanus cajan])

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-13
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST+NRVKW GYHVITSA+EASKFTV NFIAG SWLPSTGVPF
Sbjct: 313 SSTSNRVKWSGYHVITSASEASKFTVANFIAGNSWLPSTGVPF 355

Query: 62   121
           
Sbjct: 373  355

Query: 122  131
           
Sbjct: 433  355

[Close]
BLAST of WMU42409 vs. NCBI nr
Match: gi|1021486209|ref|XP_016186105.1| (PREDICTED: pectinesterase 2-like [Arachis ipaensis])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2 

Query: 2   ASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPF 61
           +ST NRVKW GYHVIT+AAEASKFTV NFIAG SWLPSTGVPF
Sbjct: 476 SSTTNRVKWGGYHVITNAAEASKFTVSNFIAGNSWLPSTGVPF 518

Query: 62   121
           
Sbjct: 536  518

Query: 122  131
           
Sbjct: 596  518

The following BLAST results are available for this feature:
BLAST of WMU42409 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47400.16.0e-1372.09 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT3G14310.17.9e-1368.89 pectin methylesterase 3[more]
AT1G53830.11.7e-1271.11 pectin methylesterase 2[more]
AT5G53370.16.6e-1278.95 pectin methylesterase PCR fragment F[more]
AT5G51490.19.6e-1162.79 Plant invertase/pectin methylesterase inhibitor superfamily[more]
BLAST of WMU42409 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PME2_CITSI1.9e-1374.42Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1[more]
PME33_ARATH1.1e-1172.09Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=P... [more]
PME3_ARATH1.4e-1168.89Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 S... [more]
PME2_ARATH3.1e-1171.11Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2[more]
PME61_ARATH1.2e-1078.95Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=P... [more]
BLAST of WMU42409 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432283|ref|XP_004133929.1|4.6e-1595.35PREDICTED: pectinesterase 2 [Cucumis sativus][more]
gi|659075527|ref|XP_008438193.1|1.8e-1495.35PREDICTED: pectinesterase 2 [Cucumis melo][more]
gi|702340966|ref|XP_010056340.1|4.3e-1386.05PREDICTED: pectinesterase 2-like [Eucalyptus grandis][more]
gi|1012335149|gb|KYP46488.1|5.7e-1386.05Pectinesterase 2 [Cajanus cajan][more]
gi|1021486209|ref|XP_016186105.1|1.3e-1286.05PREDICTED: pectinesterase 2-like [Arachis ipaensis][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021325Cla021325gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0009976S3_0009976EST
S4_0010791S4_0010791EST