WMU41962 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU41962
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 2941940 .. 2965266 (+)
Sequence length	297

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTTTTGAATTCTCTAACGAACTGAATCCCATCAGCAATATGAACCTTCAAATCTGCATCCTCAGCAAAATCGAAGTAATCCCGTGCAAGATTGAGGATTGTTGAATCTAACTCAACCACCTCAATGTGTAAAAAACACATGCATGCACGGAGGAACATGGGCAGTAAACCTGCTCCAAGACCAATGACAACTGTGTTCACCATTGTTCCAGCTGTTGCTACACTCTCCAAATATCTAGATATCAACATAAACCCAGAAATGATCCCCGAATGATAAGAACTTGCCAGGTAAGCCATG

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU41962 vs. TAIR10
Match: AT2G31740.1 (AT2G31740.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 126.7 bits (317), Expect = 7.8e-30
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = -2


Query: 9   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 68
           YLASSYH+GIISGF L+S YL+   + GTMV TVVIGLGAGLLPMFL  C+ F  IE VE
Sbjct: 506 YLASSYHTGIISGFTLVSSYLKKAESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVE 565

Query: 69  LDSTILNLARDYFDFAEDADLKVHIADGIQFVRE 128
           LD  +L++ +DYF F ++  LKVHIADGI+F+R+
Sbjct: 566 LDPVMLSVGKDYFGFTQNDRLKVHIADGIKFIRD 599

Query: 129  188
           
Sbjct: 626  599

Query: 189  248
           
Sbjct: 686  599

Query: 249  291
           
Sbjct: 746  599

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BLAST of WMU41962 vs. Swiss-Prot
Match: MET13_MOUSE (Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-09
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = -2


Query: 15  AYLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVV 74
           +YL   +H  +++G  L+      + T  T++   V+GLG G LP+F+        I+ V
Sbjct: 468 SYLCCEHHKAMVAGLALLRNPELLLETPLTLL---VVGLGGGSLPLFVHDHFPKSRIDAV 527

Query: 75  ELDSTILNLARDYFDFAEDADLKVHIADGIQFV 134
           E+D T+L +A  +F F++   +KVHIADG+ ++
Sbjct: 528 EIDPTMLEVATQWFGFSQSDRMKVHIADGLDYI 557

Query: 135  194
           
Sbjct: 588  557

Query: 195  254
           
Sbjct: 648  557

Query: 255  294
           
Sbjct: 708  557

[Close]

BLAST of WMU41962 vs. Swiss-Prot
Match: MET13_XENLA (Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-09
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = -2


Query: 24  AYLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVV 83
           +YL   +H  +ISG  L+              + +VIGLG G L +F+        +EVV
Sbjct: 463 SYLCCEHHKAMISGLALLPN---PGLLPECQASVLVIGLGGGSLSLFIHDYFPGSRVEVV 522

Query: 84  ELDSTILNLARDYFDFAEDADLKVHIADGI 143
           E+D ++L++A ++F+F +D  +KVH+ADG+
Sbjct: 523 EIDPSVLDVASNWFNFCQDERMKVHLADGL 549

Query: 144  203
           
Sbjct: 583  549

Query: 204  263
           
Sbjct: 643  549

Query: 264  294
           
Sbjct: 703  549

[Close]

BLAST of WMU41962 vs. Swiss-Prot
Match: MET13_BOVIN (Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = -2


Query: 15  AYLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVV 74
           +YL   +H  +I+G  L+           T +  +V+GLG G LP+F+        I  V
Sbjct: 468 SYLCCEHHKAMIAGLALLKN---PELLLETPLALLVVGLGGGSLPLFIHDHFPKSCIHAV 527

Query: 75  ELDSTILNLARDYFDFAEDADLKVHIADGIQFV 134
           E+D ++L +A  +F F++   +KVHIADG+ F+
Sbjct: 528 EIDPSMLEVATQWFGFSQSDRMKVHIADGLDFI 557

Query: 135  194
           
Sbjct: 588  557

Query: 195  254
           
Sbjct: 648  557

Query: 255  294
           
Sbjct: 708  557

[Close]

BLAST of WMU41962 vs. Swiss-Prot
Match: MET13_DANRE (Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 28/92 (30.43%), Postives = 53/92 (57.61%), Query Frame = -2


Query: 15  YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 74
           +L  ++H  +++G  ++   ++++      V+ +++GLG G LP F+R  +    +EVVE
Sbjct: 458 FLCCTHHEVMVAGLAMLG--MDAINNKDQPVSVLLVGLGGGGLPQFVRDFVPCARVEVVE 517

Query: 75  LDSTILNLARDYFDFAEDADLKVHIADGIQFV 134
           LD  +L++A+ +F F  D  LKV + DG+  +
Sbjct: 518 LDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHI 547

Query: 135  194
           
Sbjct: 578  547

Query: 195  254
           
Sbjct: 638  547

Query: 255  291
           
Sbjct: 698  547

[Close]

BLAST of WMU41962 vs. Swiss-Prot
Match: MET13_HUMAN (Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = -2


Query: 15  AYLASSYHSGIISGFMLISR--YLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIE 74
           +YL   +H  +I+G  L+     L  +  A      +V+GLG G LP+F+        I+
Sbjct: 467 SYLCCEHHKAMIAGLALLRNPELLLEIPLA-----LLVVGLGGGSLPLFVHDHFPKSCID 526

Query: 75  VVELDSTILNLARDYFDFAEDADLKVHIADGIQFV 134
            VE+D ++L +A  +F F++   +KVHIADG+ ++
Sbjct: 527 AVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYI 556

Query: 135  194
           
Sbjct: 587  556

Query: 195  254
           
Sbjct: 647  556

Query: 255  294
           
Sbjct: 707  556

[Close]

BLAST of WMU41962 vs. NCBI nr
Match: gi|449432402|ref|XP_004133988.1| (PREDICTED: methyltransferase-like protein 13 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = -2


Query: 3   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 62
           YLASSYHSGIISGFMLIS+YL SVA+AG MVN VVIGLGAGLLPMFLRACM FLHIEVVE
Sbjct: 502 YLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGAGLLPMFLRACMSFLHIEVVE 561

Query: 63  LDSTILNLARDYFDFAEDADLKVHIADGIQFVREFK 122
           LDS ILNLARDYFDF EDA+LKVHIADGIQFVREF+
Sbjct: 562 LDSMILNLARDYFDFTEDANLKVHIADGIQFVREFR 597

Query: 123  182
           
Sbjct: 622  597

Query: 183  242
           
Sbjct: 682  597

Query: 243  291
           
Sbjct: 742  597

[Close]

BLAST of WMU41962 vs. NCBI nr
Match: gi|700201592|gb|KGN56725.1| (hypothetical protein Csa_3G130310 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = -2


Query: 3   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 62
           YLASSYHSGIISGFMLIS+YL SVA+AG MVN VVIGLGAGLLPMFLRACM FLHIEVVE
Sbjct: 502 YLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGAGLLPMFLRACMSFLHIEVVE 561

Query: 63  LDSTILNLARDYFDFAEDADLKVHIADGIQFVREFK 122
           LDS ILNLARDYFDF EDA+LKVHIADGIQFVREF+
Sbjct: 562 LDSMILNLARDYFDFTEDANLKVHIADGIQFVREFR 597

Query: 123  182
           
Sbjct: 622  597

Query: 183  242
           
Sbjct: 682  597

Query: 243  291
           
Sbjct: 742  597

[Close]

BLAST of WMU41962 vs. NCBI nr
Match: gi|659075820|ref|XP_008438348.1| (PREDICTED: methyltransferase-like protein 13 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = -2


Query: 3   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 62
           YLASSYHSGIISGFMLIS+YL SVA+AGTMVN V+IGLGAGLLPMFLRACM FLHIEVVE
Sbjct: 502 YLASSYHSGIISGFMLISQYLGSVASAGTMVNAVIIGLGAGLLPMFLRACMSFLHIEVVE 561

Query: 63  LDSTILNLARDYFDFAEDADLKVHIADGIQFVREFK 122
           LDS ILNLARDYFDF E+A+LKVHIADGIQFVREF+
Sbjct: 562 LDSMILNLARDYFDFTENANLKVHIADGIQFVREFR 597

Query: 123  182
           
Sbjct: 622  597

Query: 183  242
           
Sbjct: 682  597

Query: 243  291
           
Sbjct: 742  597

[Close]

BLAST of WMU41962 vs. NCBI nr
Match: gi|802588846|ref|XP_012071107.1| (PREDICTED: methyltransferase-like protein 13 [Jatropha curcas])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 76/96 (79.17%), Postives = 80/96 (83.33%), Query Frame = -2


Query: 3   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 62
           YLASSYH+GIISGFMLIS YLESVA+AG M N VVIGLGAGLLPMFL  CM FLHIEVVE
Sbjct: 520 YLASSYHTGIISGFMLISSYLESVASAGNMANAVVIGLGAGLLPMFLHRCMPFLHIEVVE 579

Query: 63  LDSTILNLARDYFDFAEDADLKVHIADGIQFVREFK 122
           LD  IL+LAR YF   ED  LKVHIADGI+FVRE K
Sbjct: 580 LDHMILDLARGYFGLTEDKHLKVHIADGIKFVREVK 615

Query: 123  182
           
Sbjct: 640  615

Query: 183  242
           
Sbjct: 700  615

Query: 243  291
           
Sbjct: 760  615

[Close]

BLAST of WMU41962 vs. NCBI nr
Match: gi|255554026|ref|XP_002518053.1| (PREDICTED: methyltransferase-like protein 13 isoform X1 [Ricinus communis])

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-31
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = -2


Query: 3   YLASSYHSGIISGFMLISRYLESVATAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVE 62
           YLASSYH+GIISGFMLIS YLESV +AG  VNTVV+GLGAGLLPMFL  C+ FLH+EVVE
Sbjct: 508 YLASSYHTGIISGFMLISSYLESVESAGNTVNTVVVGLGAGLLPMFLHGCLPFLHLEVVE 567

Query: 63  LDSTILNLARDYFDFAEDADLKVHIADGIQFVREFK 122
           LD  +L LA+DYF F ED  LKVHI DGI+FVRE K
Sbjct: 568 LDPVVLALAKDYFGFIEDKHLKVHITDGIRFVREVK 603

Query: 123  182
           
Sbjct: 628  603

Query: 183  242
           
Sbjct: 688  603

Query: 243  291
           
Sbjct: 748  603

The following BLAST results are available for this feature:

BLAST of WMU41962 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31740.1	7.8e-30	63.83	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]

BLAST of WMU41962 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MET13_MOUSE	5.5e-09	33.33	Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1	[more]
MET13_XENLA	5.5e-09	34.44	Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1	[more]
MET13_BOVIN	2.7e-08	33.33	Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1	[more]
MET13_DANRE	3.5e-08	30.43	Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1	[more]
MET13_HUMAN	1.8e-07	32.63	Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1	[more]

BLAST of WMU41962 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432402\|ref\|XP_004133988.1\|	1.9e-38	89.58	PREDICTED: methyltransferase-like protein 13 [Cucumis sativus]	[more]
gi\|700201592\|gb\|KGN56725.1\|	1.9e-38	89.58	hypothetical protein Csa_3G130310 [Cucumis sativus]	[more]
gi\|659075820\|ref\|XP_008438348.1\|	1.9e-38	88.54	PREDICTED: methyltransferase-like protein 13 [Cucumis melo]	[more]
gi\|802588846\|ref\|XP_012071107.1\|	1.0e-31	79.17	PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]	[more]
gi\|255554026\|ref\|XP_002518053.1\|	3.9e-31	75.00	PREDICTED: methyltransferase-like protein 13 isoform X1 [Ricinus communis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021411	Cla021411	gene
Cla021413	Cla021413	gene
Cla021414	Cla021414	gene
Cla021412	Cla021412	gene
Cla021410	Cla021410	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0092418	S1_0092418	EST
S2_0050053	S2_0050053	EST