WMU41844 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU41844
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cell division cycle protein, putative
Location	Chr3 : 6539557 .. 6539963 (+)
Sequence length	412

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAGTGGGTGCAACCAAAATGAAGCAAGAAGAAGTGAATCGGTGCCAAAATTCAAGAATGGTATCCAGAATTCAAATCCTTCTCTATCAAAACCCTAATTCATGACCTTCCAGAACCTTTCGTTCAATACCTTCTCGACGACTCTGGCCCTTTCCTTCTTCCACTTTCCATCTCCAACGACGATGCTCTTCCCAATAGAGTCTTTAATCCCCAAGACCAACAGGATTACCAGCTCAAAGAAGAATCCGACGATGATTCCGATCAATCCACTTCGCCTCCTTCCTTTCCGGAGCTTGAATCTGATGTTAAACGCCCAATTTTCTCCCTCGGAGGTTCCGTCTTCCCTAAATTGAACTGGAGCGCACCTAAAAGACTCTGCCTGGATTAGCCCTAACGGACATTGAAATGACTT

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU41844 vs. TAIR10
Match: AT4G05440.1 (AT4G05440.1 temperature sensing protein-related)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-27
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQ WYP FKS +IKT  H LPE F+ YL+DDSGPFLLP S++N+DA+PNRV N +++ D
Sbjct: 10  QIQNWYPRFKSLTIKTKFHKLPESFINYLIDDSGPFLLPHSVTNEDAMPNRVHNFEEEDD 69

Query: 107 YQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 166
           +Q+ EE               ELE +++  I +LGG++ PKLNWS+PK
Sbjct: 70  FQVPEE--ASDDEPLNRPSFPELEIEIRESIETLGGTIIPKLNWSSPK 115

Query: 167  226
           
Sbjct: 130  115

Query: 227  286
           
Sbjct: 190  115

Query: 287  346
           
Sbjct: 250  115

Query: 347  371
           
Sbjct: 310  115

[Close]

BLAST of WMU41844 vs. Swiss-Prot
Match: CD123_XENLA (Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 2


Query: 38  IGAKIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALP---NRVFN 97
           +  +  +WYP FK FSI+++I  LPE    YLLDD       L +S  +  P    R  N
Sbjct: 7   LNCQFGQWYPTFKKFSIRSVIIPLPENVKDYLLDDG-----TLVVSGREESPGCSQRDLN 66

Query: 98  PQDQQDYQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 157
             ++ + Q  ++               E    V+  I SLGGSVFPKLNWS+P+
Sbjct: 67  CTEEDEVQWSDD---ESTATLTAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPR 112

Query: 158  217
           
Sbjct: 127  112

Query: 218  277
           
Sbjct: 187  112

Query: 278  337
           
Sbjct: 247  112

Query: 338  371
           
Sbjct: 307  112

[Close]

BLAST of WMU41844 vs. Swiss-Prot
Match: CD123_XENTR (Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 38/114 (33.33%), Postives = 52/114 (45.61%), Query Frame = 2


Query: 38  IGAKIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALP---NRVFN 97
           +  +  +WYP FK  SI++++  LPE    YLLDD       L +S  +  P    R  N
Sbjct: 7   LNCQFSQWYPRFKKLSIRSVVIPLPENVKDYLLDDG-----TLVVSGREESPGCSQRDLN 66

Query: 98  PQDQQDYQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 157
              + + Q  ++               E    V+  I SLGGSVFPKLNWS+P+
Sbjct: 67  STAEDEVQWSDD---ENTATLKAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPR 112

Query: 158  217
           
Sbjct: 127  112

Query: 218  277
           
Sbjct: 187  112

Query: 278  337
           
Sbjct: 247  112

Query: 338  371
           
Sbjct: 307  112

[Close]

BLAST of WMU41844 vs. Swiss-Prot
Match: CD123_NEMVE (Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 2


Query: 59  WYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQDYQLK 118
           WYP FK+ +I++ I  L + FV YL  D    +LP       +LP    +  D +++Q  
Sbjct: 14  WYPRFKNVTIRSKIIPLSKEFVDYLKTDG--VVLP---GKPSSLPRHEDDESDSEEWQNL 73

Query: 119 EEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 178
           EE               ++++ +K  I  LGG VFPKLNWSAP+
Sbjct: 74  EEDPEQATVEAPEFN--DIDTKIKEAIQELGGEVFPKLNWSAPR 110

Query: 179  238
           
Sbjct: 134  110

Query: 239  298
           
Sbjct: 194  110

Query: 299  358
           
Sbjct: 254  110

Query: 359  371
           
Sbjct: 314  110

[Close]

BLAST of WMU41844 vs. Swiss-Prot
Match: CD123_BOVIN (Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 2


Query: 59  WYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQDYQLK 118
           WYP F+S +IK++I  LP+    YLLDD     L +S   D    ++  +  + ++ Q  
Sbjct: 14  WYPLFRSLTIKSVILPLPQNVKDYLLDDG---TLVVSGREDPPAHSQPDSDDEAEEIQWS 73

Query: 119 EEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 178
           ++               E  + V+  I SLGGSVFPKLNWSAP+
Sbjct: 74  DDENTATLTAPEFP---EFTTKVQEAINSLGGSVFPKLNWSAPR 111

Query: 179  238
           
Sbjct: 134  111

Query: 239  298
           
Sbjct: 194  111

Query: 299  358
           
Sbjct: 254  111

Query: 359  371
           
Sbjct: 314  111

[Close]

BLAST of WMU41844 vs. Swiss-Prot
Match: CD123_DANRE (Cell division cycle protein 123 homolog OS=Danio rerio GN=cdc123 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 35/111 (31.53%), Postives = 52/111 (46.85%), Query Frame = 2


Query: 38  IGAKIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQD 97
           +  +   WYP FK  +IK+LI  +P+  + YLLDD    L+     N+++      +  D
Sbjct: 7   VNCQFSVWYPLFKKHTIKSLILPIPQNVIDYLLDDG--TLVVSGSENNNSQTQANNSDSD 66

Query: 98  QQDYQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 157
           ++D Q  ++               E    V+  I  LGG +FPKLNWSAP+
Sbjct: 67  EEDIQWTDD---ETTTTVTAPEFPEFNVKVQEAINVLGGCIFPKLNWSAPR 112

Query: 158  217
           
Sbjct: 127  112

Query: 218  277
           
Sbjct: 187  112

Query: 278  337
           
Sbjct: 247  112

Query: 338  371
           
Sbjct: 307  112

[Close]

BLAST of WMU41844 vs. NCBI nr
Match: gi|659099627|ref|XP_008450697.1| (PREDICTED: cell division cycle protein 123 homolog [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 81/120 (67.50%), Postives = 87/120 (72.50%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQEWYP+FK FSIKTLIH LPE FV YLLDDS PFLLPLSISNDDALPNRVFNP D+ D
Sbjct: 10  QIQEWYPKFKPFSIKTLIHHLPESFVHYLLDDSSPFLLPLSISNDDALPNRVFNPVDEPD 69

Query: 107 YQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPKRLCLD*P*RTLK 166
           +QLK+E               +LESDVK  I SLGGSVFPKLNWSAPK      P  TLK
Sbjct: 70  FQLKQESDDDSDQPTSPPSFPDLESDVKHSISSLGGSVFPKLNWSAPKDSAWISPNGTLK 129

Query: 167  226
           
Sbjct: 130  129

Query: 227  286
           
Sbjct: 190  129

Query: 287  346
           
Sbjct: 250  129

Query: 347  406
           
Sbjct: 310  129

[Close]

BLAST of WMU41844 vs. NCBI nr
Match: gi|449435703|ref|XP_004135634.1| (PREDICTED: cell division cycle protein 123 homolog [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-35
Identity = 81/121 (66.94%), Postives = 88/121 (72.73%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQEWYP+FKSFSIKTLIH LPE FV YLLDDS PF+LPLSISNDDALPNRVFNP D+ D
Sbjct: 10  QIQEWYPKFKSFSIKTLIHHLPESFVHYLLDDSSPFVLPLSISNDDALPNRVFNPVDEPD 69

Query: 107 YQLKEE-XXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPKRLCLD*P*RTL 166
           +QLK+E                +LESDVK  I SLGGSVFPKLNWSAPK      P  TL
Sbjct: 70  FQLKQESDDDSDQPTSPPPSFPDLESDVKHSISSLGGSVFPKLNWSAPKDSAWISPNGTL 129

Query: 167 K 226
           K
Sbjct: 130 K 130

Query: 227  286
           
Sbjct: 190  130

Query: 287  346
           
Sbjct: 250  130

Query: 347  406
           
Sbjct: 310  130

[Close]

BLAST of WMU41844 vs. NCBI nr
Match: gi|694332880|ref|XP_009357055.1| (PREDICTED: cell division cycle protein 123 homolog [Pyrus x bretschneideri])

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-33
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQEWYP+FKS SIKT IH+LPE FVQYLLDDSGPFLLP+SISNDDA PNR+ NP+++ D
Sbjct: 10  QIQEWYPKFKSLSIKTRIHELPESFVQYLLDDSGPFLLPVSISNDDAFPNRIHNPEEEDD 69

Query: 107 YQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 166
           YQ+ E                ELE +VK  I SLGGSVFPKLNWSAPK
Sbjct: 70  YQVSEGSGDESEQPSMPPSFPELELEVKESIKSLGGSVFPKLNWSAPK 117

Query: 167  226
           
Sbjct: 130  117

Query: 227  286
           
Sbjct: 190  117

Query: 287  346
           
Sbjct: 250  117

Query: 347  371
           
Sbjct: 310  117

[Close]

BLAST of WMU41844 vs. NCBI nr
Match: gi|645248668|ref|XP_008230400.1| (PREDICTED: cell division cycle protein 123 homolog [Prunus mume])

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-33
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQEWYP+FKS SIKT IH+LPEPFVQYLLDDSGPFLLP+SI+N+DA PNR+ NP+++ D
Sbjct: 19  QIQEWYPKFKSVSIKTRIHELPEPFVQYLLDDSGPFLLPVSITNEDAFPNRIHNPEEEDD 78

Query: 107 YQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 166
           YQ+ E                ELE  VK  I SLGGSVFPKLNWSAPK
Sbjct: 79  YQISEGSDDEAEQPPLPPSFPELELQVKESIESLGGSVFPKLNWSAPK 126

Query: 167  226
           
Sbjct: 139  126

Query: 227  286
           
Sbjct: 199  126

Query: 287  346
           
Sbjct: 259  126

Query: 347  371
           
Sbjct: 319  126

[Close]

BLAST of WMU41844 vs. NCBI nr
Match: gi|595938103|ref|XP_007215632.1| (hypothetical protein PRUPE_ppa008083mg [Prunus persica])

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-33
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 2


Query: 47  KIQEWYPEFKSFSIKTLIHDLPEPFVQYLLDDSGPFLLPLSISNDDALPNRVFNPQDQQD 106
           +IQEWYP+FKS SIKT IH+LPEPFVQYLLDDSGPFLLP+SI+N+DA PNR+ NP+++ D
Sbjct: 19  QIQEWYPKFKSVSIKTRIHELPEPFVQYLLDDSGPFLLPVSITNEDAFPNRIHNPEEEDD 78

Query: 107 YQLKEEXXXXXXXXXXXXXXXELESDVKRPIFSLGGSVFPKLNWSAPK 166
           YQ+ E                ELE  VK  I SLGGSVFPKLNWSAPK
Sbjct: 79  YQISEGSDDEAEQPPLPPSFPELELQVKESIESLGGSVFPKLNWSAPK 126

Query: 167  226
           
Sbjct: 139  126

Query: 227  286
           
Sbjct: 199  126

Query: 287  346
           
Sbjct: 259  126

Query: 347  371
           
Sbjct: 319  126

The following BLAST results are available for this feature:

BLAST of WMU41844 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05440.1	1.3e-27	50.93	temperature sensing protein-related	[more]

BLAST of WMU41844 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CD123_XENLA	1.5e-09	35.09	Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1	[more]
CD123_XENTR	7.6e-09	33.33	Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=...	[more]
CD123_NEMVE	1.7e-08	34.62	Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3...	[more]
CD123_BOVIN	2.2e-08	35.58	Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1	[more]
CD123_DANRE	2.2e-08	31.53	Cell division cycle protein 123 homolog OS=Danio rerio GN=cdc123 PE=2 SV=1	[more]

BLAST of WMU41844 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099627\|ref\|XP_008450697.1\|	1.9e-36	67.50	PREDICTED: cell division cycle protein 123 homolog [Cucumis melo]	[more]
gi\|449435703\|ref\|XP_004135634.1\|	2.8e-35	66.94	PREDICTED: cell division cycle protein 123 homolog [Cucumis sativus]	[more]
gi\|694332880\|ref\|XP_009357055.1\|	3.4e-33	65.74	PREDICTED: cell division cycle protein 123 homolog [Pyrus x bretschneideri]	[more]
gi\|645248668\|ref\|XP_008230400.1\|	4.4e-33	64.81	PREDICTED: cell division cycle protein 123 homolog [Prunus mume]	[more]
gi\|595938103\|ref\|XP_007215632.1\|	4.4e-33	64.81	hypothetical protein PRUPE_ppa008083mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009772	CDC123

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla019535	Cla019535	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0160496	S1_0160496	EST
S3_0090990	S3_0090990	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009772	Cell division cycle protein 123	PANTHER	PTHR15323:SF6	CELL DIVISION CYCLE PROTEIN 123 HOMOLOG	coord: 7..122 score: 1.4
IPR009772	Cell division cycle protein 123	PFAM	PF07065	D123	coord: 20..123 score: 1.7
None	No IPR available	PANTHER	PTHR15323	D123 PROTEIN	coord: 7..122 score: 1.4