WMU41784 (transcribed_cluster) Watermelon (97103) v1

NameWMU41784
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAmaranthin-like lectin
LocationChr6 : 966040 .. 967454 (+)
Sequence length468
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTCTTCACCACTTCCGATGGACATGTAAGGATTAAAAATGACTATTTGGGGAAATTTTGGATTCGTGATCCTAATTGGATTCATGTCAAAGCCAGTGAGAGTGATTTTGATGATCCAAACACTCTGTTTAGGCCTGTTCGGCTTGGCGATGGCCATGGCGTAGCGCTTCGAAACAGAGGAAAATGATAGGTTCTGCAAGAGGCTGAGTACGGAGGGGAAGGATAATTGTTTGAATGCTGCTGATACCAGCATCAGTGCTGAGGCTCAGCTCCAGATTAAAAGAACTTGTCATTTCTAGGACCATTTACGATGTCAATTTTCGTGTTTTAGATGCTCGATTCTATGACGAGACGCCCATGACGATGATATCTAAAGAGATGGTAAAACAGAAACAGCGAGCCGGAAGCTGCAAAAAGCTGAAGCTTTGGTACGACGATACGAAGTCGTCAACATGGACGAGCACGGT
BLAST of WMU41784 vs. NCBI nr
Match: gi|659120115|ref|XP_008460021.1| (PREDICTED: uncharacterized protein LOC103498960 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-27
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 3

Query: 3   VFTTSDGHVRIKNDYLGKFWIRDPNWIHVKASESDFDDPNTLFRPVRLGDGHGVALRNRG 62
           +FTTSDGHVRIKNDYL KFWIRDPNWIHVKASESDFDDPNTLF PVRLGDGHGVALRNRG
Sbjct: 208 IFTTSDGHVRIKNDYLEKFWIRDPNWIHVKASESDFDDPNTLFWPVRLGDGHGVALRNRG 267

Query: 63  122
           
Sbjct: 268 267

Query: 123 182
           
Sbjct: 328 267

BLAST of WMU41784 vs. NCBI nr
Match: gi|778711472|ref|XP_004140598.2| (PREDICTED: uncharacterized protein LOC101212067 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 3

Query: 3   VFTTSDGHVRIKNDYLGKFWIRDPNWIHVKASESDFDDPNTLFRPVRLGDGHGVALRNRG 62
           +FTTSDGHVRIKNDYL KFWIRDPNWIHVKASES+FDDPNTLF PVRLGDGHGVALRNRG
Sbjct: 208 IFTTSDGHVRIKNDYLEKFWIRDPNWIHVKASESNFDDPNTLFWPVRLGDGHGVALRNRG 267

Query: 63  122
           
Sbjct: 268 267

Query: 123 182
           
Sbjct: 328 267

BLAST of WMU41784 vs. NCBI nr
Match: gi|778711463|ref|XP_004140599.2| (PREDICTED: uncharacterized protein LOC101212310 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.0e-25
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 3

Query: 3   VFTTSDGHVRIKNDYLGKFWIRDPNWIHVKASESDFDDPNTLFRPVRLGDGHGVALRNRG 62
           +FTT+DGHVRIKNDYLGKFWIRDPNWI VKASESDFDDPN LF PVRLGDG G+ALRNRG
Sbjct: 209 IFTTADGHVRIKNDYLGKFWIRDPNWILVKASESDFDDPNNLFWPVRLGDGQGIALRNRG 268

Query: 63  122
           
Sbjct: 269 268

Query: 123 182
           
Sbjct: 329 268

BLAST of WMU41784 vs. NCBI nr
Match: gi|700191128|gb|KGN46332.1| (hypothetical protein Csa_6G086130 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 7.1e-19
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 3

Query: 3   VFTTSDGHVRIKNDYLGKFWIRDPNWIHVKASESDFDDPNTLFRPVRLGDGHGVALRNRG 62
           +FTT DGH+ IKND L KFWIRDPNWI  + SESDF D N LF PV+LGDGHGVALRNRG
Sbjct: 210 IFTTYDGHIMIKNDSLEKFWIRDPNWILGEGSESDFTDRNALFWPVQLGDGHGVALRNRG 269

Query: 63  122
           
Sbjct: 270 269

Query: 123 182
           
Sbjct: 330 269

BLAST of WMU41784 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3

Query: 3   VFTTSDGHVRIKNDYLGKFWIRDPNWIHVKASESDFDDPNTLFRPVRLGDGHGVALRNRG 62
           VFTT DG V IK+DY G+FW R PNWI   + +S  ++P+TLF PVR+ D + VALRN G
Sbjct: 200 VFTTHDGSVHIKSDYFGRFWRRSPNWIWADSDDSTTNNPDTLFWPVRV-DKNVVALRNLG 258

Query: 63  122
           
Sbjct: 260 258

Query: 123 182
           
Sbjct: 320 258

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659120115|ref|XP_008460021.1|2.4e-2795.00PREDICTED: uncharacterized protein LOC103498960 [Cucumis melo][more]
gi|778711472|ref|XP_004140598.2|9.2e-2793.33PREDICTED: uncharacterized protein LOC101212067 [Cucumis sativus][more]
gi|778711463|ref|XP_004140599.2|5.0e-2588.33PREDICTED: uncharacterized protein LOC101212310 [Cucumis sativus][more]
gi|700191128|gb|KGN46332.1|7.1e-1975.00hypothetical protein Csa_6G086130 [Cucumis sativus][more]
gi|225465427|ref|XP_002264911.1|2.1e-1056.67PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla007029Cla007029gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0045597S1_0045597EST
S1_0149444S1_0149444EST