WMU41373 (transcribed_cluster) Watermelon (97103) v1

NameWMU41373
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
LocationChr5 : 37373 .. 37786 (+)
Sequence length423
The following sequences are available for this feature:

transcribed_cluster sequence

GGGGTCTGTAACAGGACCAGGCCGGACTTTTCTTTCGGAAACCCTCCCTCTTTGGATGTTAGTCCAGACATGGCAGAAAGAAATGAAGAGCAAGATGGTGTCCACAATCAGAGAGATTTGGAAAAGAAAAGAACAGAGCAAGATCCTCGTCCCAATACTACACAAAAAAACACTCGTCGCTCTGTTTGCGCATGCATCTCCAATCTTCCTCCTCATCGTTGGCGTCGTTGCTCTCACTCTCTGGCTTGTCTACCGCCCCATTGACCCCCAATTCAAGGTGGTTGGAGCCGCAATATACGACCTCAACATGTCATCTCTGCCCCTGCTGTCCACAACCATGCAAATTCACAATCGTTACGAGGAACCCCAACAGGCGAGTTTCCATTTAATTTATGACAGACTGACTGCCTTTGTGTCGTATAG
BLAST of WMU41373 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-13
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2

Query: 209 LLIVGVVALTLWLVYRPIDPQFKVVGAAIYDLNMSSLPLLSTTMQIHNRYEEP-QQASFH 268
           L+I+G++AL LWLVYRP  P+  VVGAAIYDLN ++ PL+ST++Q       P ++ S H
Sbjct: 52  LVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLARNPNRRVSIH 111

Query: 269 LIYDRLTAFVSY 328
             YD+L+ +V+Y
Sbjct: 112 --YDKLSMYVTY 121

Query: 329 388
           
Sbjct: 172 121

Query: 389 422
           
Sbjct: 232 121

BLAST of WMU41373 vs. NCBI nr
Match: gi|449431934|ref|XP_004133755.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 2

Query: 110 REIWKRKEQSKILVPILHKKTLVALFAHASPIFLLIVGVVALTLWLVYRPIDPQFKVVGA 169
           +++ + K +++       K+T  ++ A  S IFLL++GVVALTLWLVYRPIDPQF VVGA
Sbjct: 15  KDLKEEKNRARFSSRYYSKRTRRSVCACIS-IFLLVIGVVALTLWLVYRPIDPQFTVVGA 74

Query: 170 AIYDLNMSSLPLLSTTMQIHNRYEEPQQASFHLIYDRLTAFVSY 229
           AIYDLNMSSLPLLSTTMQ       P +    + YDRLT FVSY
Sbjct: 75  AIYDLNMSSLPLLSTTMQFTIVTRNPNR-RVSIYYDRLTVFVSY 116

Query: 230 289
           
Sbjct: 135 116

Query: 290 349
           
Sbjct: 195 116

Query: 350 409
           
Sbjct: 255 116

Query: 410 422
           
Sbjct: 315 116

BLAST of WMU41373 vs. NCBI nr
Match: gi|659074695|ref|XP_008437747.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 2

Query: 110 REIWKRKEQSKILVPILHKKTLVALFAHASPIFLLIVGVVALTLWLVYRPIDPQFKVVGA 169
           R++ + K +++       K T  ++ A  S IFLLI+GVVALTLWLVYRPIDPQF VVGA
Sbjct: 15  RDLKEEKNRARFSHRYYSKSTRRSVCACIS-IFLLIIGVVALTLWLVYRPIDPQFTVVGA 74

Query: 170 AIYDLNMSSLPLLSTTMQIHNRYEEPQQASFHLIYDRLTAFVSY 229
           AIYDLNMSSLPLLSTTMQ       P +    + YDRLT FVSY
Sbjct: 75  AIYDLNMSSLPLLSTTMQFTIVTRNPNR-RVSIYYDRLTIFVSY 116

Query: 230 289
           
Sbjct: 135 116

Query: 290 349
           
Sbjct: 195 116

Query: 350 409
           
Sbjct: 255 116

Query: 410 422
           
Sbjct: 315 116

BLAST of WMU41373 vs. NCBI nr
Match: gi|645284125|ref|XP_008245646.1| (PREDICTED: protein YLS9 [Prunus mume])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 2

Query: 203 IFLLIVGVVALTLWLVYRPIDPQFKVVGAAIYDLNMSSLPLLSTTMQIHNRYEEPQQASF 262
           IFLL+ GV ALTLWLVYRP  PQF VVGAA+YDLN +S PL+STTMQ       P +   
Sbjct: 54  IFLLLAGVTALTLWLVYRPHKPQFTVVGAAVYDLNATSPPLISTTMQFTLVTHNPNR-RV 113

Query: 263 HLIYDRLTAFVSY 322
            + YDRL AFVSY
Sbjct: 114 SIYYDRLYAFVSY 125

Query: 323 382
           
Sbjct: 174 125

Query: 383 422
           
Sbjct: 234 125

BLAST of WMU41373 vs. NCBI nr
Match: gi|596005536|ref|XP_007218377.1| (hypothetical protein PRUPE_ppa011309mg [Prunus persica])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 2

Query: 203 IFLLIVGVVALTLWLVYRPIDPQFKVVGAAIYDLNMSSLPLLSTTMQIHNRYEEPQQASF 262
           IFLL+ GV ALTLWLVYRP  PQF VVGAA+YDLN +S PL+STTMQ       P +   
Sbjct: 38  IFLLLAGVTALTLWLVYRPHKPQFTVVGAAVYDLNATSPPLISTTMQFTLVTHNPNR-RV 97

Query: 263 HLIYDRLTAFVSY 322
            + YDRL AFVSY
Sbjct: 98  SIYYDRLYAFVSY 109

Query: 323 382
           
Sbjct: 158 109

Query: 383 422
           
Sbjct: 218 109

BLAST of WMU41373 vs. NCBI nr
Match: gi|694380987|ref|XP_009366593.1| (PREDICTED: protein YLS9 [Pyrus x bretschneideri])

HSP 1 Score: 82.4 bits (202), Expect = 6.8e-13
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 2

Query: 203 IFLLIVGVVALTLWLVYRPIDPQFKVVGAAIYDLNMSSLPLLSTTMQIHNRYEEPQQASF 262
           IFLL+ GV ALTLWLVYRP  PQF +VGAA+Y LN++S PL+STTMQ       P +   
Sbjct: 36  IFLLLAGVTALTLWLVYRPHKPQFTIVGAAVYSLNVTSPPLISTTMQFTIVTRNPNR-RV 95

Query: 263 HLIYDRLTAFVSY 322
            + YDRL+AFV+Y
Sbjct: 96  SIYYDRLSAFVAY 107

Query: 323 382
           
Sbjct: 156 107

Query: 383 422
           
Sbjct: 216 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G01410.15.5e-1350.00 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
Match NameE-valueIdentityDescription
gi|449431934|ref|XP_004133755.1|4.1e-1856.73PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659074695|ref|XP_008437747.1|4.1e-1858.65PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|645284125|ref|XP_008245646.1|1.8e-1363.01PREDICTED: protein YLS9 [Prunus mume][more]
gi|596005536|ref|XP_007218377.1|1.8e-1363.01hypothetical protein PRUPE_ppa011309mg [Prunus persica][more]
gi|694380987|ref|XP_009366593.1|6.8e-1358.90PREDICTED: protein YLS9 [Pyrus x bretschneideri][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021058Cla021058gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0153521S3_0153521EST
S4_0041221S4_0041221EST
S4_0056631S4_0056631EST
S4_0061466S4_0061466EST
S4_0090124S4_0090124EST
S4_0109059S4_0109059EST
S4_0164932S4_0164932EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 69..141
score: 1.8
NoneNo IPR availablePANTHERPTHR31415:SF9SUBFAMILY NOT NAMEDcoord: 69..141
score: 1.8