WMU40768 (transcribed_cluster) Watermelon (97103) v1

NameWMU40768
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr10 : 23827965 .. 23828510 (+)
Sequence length548
The following sequences are available for this feature:

transcribed_cluster sequence

AAAGTTAGTGCTAAAGGATGCAGTTTTACCATTGTTTCTCAGCTTGAATTGCCTTTTGTTAGACGGCTCTTTCTACACGCATAGTCGATCAGATCTCCTTGGTTGTCCGATGTGATTTGGATGGTGTTGAGGAAGATGTGAGCATTCTTACTCAGAATCAGCTCCGTCTTGCTATTTTCAGTGAAGATTGGGAAGTTAAAATAGAAGGAAAGTGTGAGGTTGATGGTGCAGCCGAAGAAGGCTGTGGCCAGCAGGAGAATTCTGATTGTTGCTTGACAACTGCTCATCGTCTCGAATCCATTGAACTGTCCTTTGTAAGGTCAAACAAAGAGAAATGACTTTGGAGGAGGGCCTGAGATTGCTGATGTTTGATGTTATGACAATTGGTAGTATTATTGTTTTAATTTCATTAGTTATATACTTAAGTAACGATACTTATCTACACATTTATCACCGGGAGCTCCTACTAGCTATTTTATGGTGGATAAAAAAATAATTTGTAGGATCTACTCAAGGTTCGAAATATTGATGTTTATAGAATTATTGAG
BLAST of WMU40768 vs. NCBI nr
Match: gi|449437910|ref|XP_004136733.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = -1

Query: 96  MSSCQATIRILLLATAFFGCTINLTLSFYFNFPIFTENSKTELILSKNAHIFLNTIQITS 155
           M  C+A IRILL    FF CTIN TL F F+FP F ++S TELILS N  IF   +++T 
Sbjct: 1   MRCCKAIIRILLFFATFFRCTINPTLCFDFDFPFFDDDSDTELILSNNVRIFDRALRVTP 60

Query: 156 DNQG 215
           D  G
Sbjct: 61  DIGG 64

Query: 216 275
           
Sbjct: 121 64

Query: 276 288
           
Sbjct: 181 64

BLAST of WMU40768 vs. NCBI nr
Match: gi|659084734|ref|XP_008443045.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -1

Query: 111 MSSCQATIRILLLATAFF-GCTINLTLSFYFNFPIFTENSKTELILSKNAHIFLNTIQIT 170
           M   +A IRILL    FF GCTINLTL F F+FP F +NS TELILS NA IF   +++T
Sbjct: 1   MRCYEAIIRILLFVATFFAGCTINLTLCFDFDFPFFDDNSDTELILSNNARIFDRALRVT 60

Query: 171 230
           
Sbjct: 61  60

Query: 231 288
           
Sbjct: 121 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|449437910|ref|XP_004136733.1|1.9e-0753.13PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]
gi|659084734|ref|XP_008443045.1|3.3e-0758.33PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Cucumis... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla017549Cla017549gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0033497S3_0033497EST
S3_0074017S3_0074017EST
S3_0094613S3_0094613EST
S3_0104612S3_0104612EST