WMU40758 (transcribed_cluster) Watermelon (97103) v1

NameWMU40758
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionABC1-like kinase
LocationChr3 : 28878231 .. 28878906 (-)
Sequence length681
The following sequences are available for this feature:

transcribed_cluster sequence

ATTCTATTATTTAGGGACAATAATTCTCGAGGTCTTTGTTTGAGTAATGATGAGCAAGAAAGTATGGTAGAGCTTCGAGATCAGGTACTGAGGATATGGAGACTACTTCAATCTTCTGAAAATTTTGATCCTACACTTTTGCAACCCATTGTGCAGGTACGGATTAGCATATTTTTCTTTTGTGCTTGTACTGAAGCTGCTACCTATTGATATACAAATCTGAAACCACTATATCCGGAGGAAACTCTGTCCGAAAGGAAACTTTGTTATTAACTTATTATTATAATTAAGTCTGGCTTGCATTTCGTGCAGATGAGAATCTCGTGTGAGATGAAGTTCAATTTATACCATAAGTAGCTTGCCTAAATTTGTTAAATATCTTCCACAAACAGGTCCTACAACAGCCTGAGGCTCGCAGTTTTGGCGGCCGCATTTTCAGTGGGATTACTCAGCGTCTTGCTGCACGGATGCTTCAGCAAGTACTTCGAGCTTCAACAACAGTGTCTGCTTCAACTGTGTAACCATTGTTGATTCAGGTTCTAATTTGTAATCAGCTCGGTTCGTGTATCTTTGTTAATTTCTTCAACATTCAATGATATCACTGTCAATATACTGGACATTGTTGTTGCATCAATAGCGATACCAAAAGAAGTAATTATACCATTCATTTTATATAAGTTT
BLAST of WMU40758 vs. TAIR10
Match: AT1G79600.1 (AT1G79600.1 Protein kinase superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           L+F  N +  L +S  E +S +ELRDQV RIW LLQSSE+FDP +LQPI+QV
Sbjct: 619 LVFNGNGNGPLTMSTAELQSTLELRDQVSRIWGLLQSSESFDPAILQPILQV 670

Query: 64  123
           
Sbjct: 679 670

Query: 124 160
           
Sbjct: 739 670


HSP 2 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 3

Query: 390 QVLQQPEARSFGGRIFSGITQRLAARMLQQVLRASTTVSA 449
           QVLQQPEAR  GGR+  G+ QRLAAR LQQ+LRA+T  SA
Sbjct: 669 QVLQQPEARRLGGRVAGGVGQRLAARFLQQLLRATTPSSA 708

Query: 450 509
           
Sbjct: 729 708

BLAST of WMU40758 vs. Swiss-Prot
Match: Y1796_ARATH (Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           L+F  N +  L +S  E +S +ELRDQV RIW LLQSSE+FDP +LQPI+QV
Sbjct: 619 LVFNGNGNGPLTMSTAELQSTLELRDQVSRIWGLLQSSESFDPAILQPILQV 670

Query: 64  123
           
Sbjct: 679 670

Query: 124 160
           
Sbjct: 739 670


HSP 2 Score: 56.2 bits (134), Expect = 5.3e-07
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 3

Query: 390 QVLQQPEARSFGGRIFSGITQRLAARMLQQVLRASTTVSA 449
           QVLQQPEAR  GGR+  G+ QRLAAR LQQ+LRA+T  SA
Sbjct: 669 QVLQQPEARRLGGRVAGGVGQRLAARFLQQLLRATTPSSA 708

Query: 450 509
           
Sbjct: 729 708

BLAST of WMU40758 vs. NCBI nr
Match: gi|449435585|ref|XP_004135575.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           LLFRDN SR L +SN+E+ESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV
Sbjct: 614 LLFRDNGSRALGMSNEEKESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 665

Query: 64  123
           
Sbjct: 674 665

Query: 124 160
           
Sbjct: 734 665

BLAST of WMU40758 vs. NCBI nr
Match: gi|659099243|ref|XP_008450502.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           LLFRDN  R L +SN+E+ESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV
Sbjct: 611 LLFRDNGPRALGMSNEEKESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 662

Query: 64  123
           
Sbjct: 671 662

Query: 124 160
           
Sbjct: 731 662

BLAST of WMU40758 vs. NCBI nr
Match: gi|700257455|gb|AIU50334.1| (ABC1-like kinase, partial [Platanus x acerifolia])

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-10
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           L+F  N +  L +S  EQESM+ELRDQV RIW LLQSSENFDP LLQPI+QV
Sbjct: 533 LVFNGNTTGPLVMSGSEQESMLELRDQVFRIWGLLQSSENFDPALLQPILQV 584

Query: 64  123
           
Sbjct: 593 584

Query: 124 160
           
Sbjct: 653 584

BLAST of WMU40758 vs. NCBI nr
Match: gi|700257459|gb|AIU50336.1| (ABC1-like kinase, partial [Houttuynia cordata])

HSP 1 Score: 73.2 bits (178), Expect = 6.7e-10
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 1   ILLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 60
           +L F  N S  L ++  EQESM++LRDQV+RIWRLL+SSENFDP++L PIVQV
Sbjct: 532 VLAFNGNASSPLVMNGSEQESMLQLRDQVIRIWRLLRSSENFDPSILLPIVQV 584

Query: 61  120
           
Sbjct: 592 584

Query: 121 160
           
Sbjct: 652 584

BLAST of WMU40758 vs. NCBI nr
Match: gi|225464716|ref|XP_002263052.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 4   LLFRDNNSRGLCLSNDEQESMVELRDQVLRIWRLLQSSENFDPTLLQPIVQV 63
           L+   N +  L +S+ EQE+M++LRDQV RIWRLL+SSENFDP LLQPIVQV
Sbjct: 629 LIVSGNTAGPLMMSDTEQENMIKLRDQVFRIWRLLRSSENFDPALLQPIVQV 680

Query: 64  123
           
Sbjct: 689 680

Query: 124 160
           
Sbjct: 749 680

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G79600.12.4e-1059.62 Protein kinase superfamily protein[more]
Match NameE-valueIdentityDescription
Y1796_ARATH4.3e-0959.62Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic O... [more]
Match NameE-valueIdentityDescription
gi|449435585|ref|XP_004135575.1|3.7e-1688.46PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chlo... [more]
gi|659099243|ref|XP_008450502.1|1.4e-1586.54PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chlo... [more]
gi|700257455|gb|AIU50334.1|3.0e-1069.23ABC1-like kinase, partial [Platanus x acerifolia][more]
gi|700257459|gb|AIU50336.1|6.7e-1064.15ABC1-like kinase, partial [Houttuynia cordata][more]
gi|225464716|ref|XP_002263052.1|1.5e-0965.38PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chlo... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla005130Cla005130gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0036633S2_0036633EST
S2_0066270S2_0066270EST
S2_0130713S2_0130713EST
WMN64G03WMN64G03EST