WMU40687 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40687
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Mitochondrial processing peptidase beta subunit
Location	Chr7 : 14827685 .. 14829123 (+)
Sequence length	460

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATGTGCCCAAGGCTTTGGATATTTTGGCTGACATCTTGCAGAATTCGAAGTTCGATGAGCACCGGATTAGTCGTGAACGTGATGTGATTTTGAGAGAAAATGGAGGAGGTTGAGGGGCAAACCGAAGAAGTTATCTTTGACCATTTGCACGCAACTGCATTCCAGTATACTCCCCTTGGTAGAACCATTCTTGGACCTGCTCTAAAATATCAGGACAATTACCAAGGATCATCTTCAAAGTTATATTCAAACTCATTATACGGCCCCAAGAATGGTTATTGCTGCTTCTGGAGCTGTTAAGCATGAGGATTTCGTTGGGCAAGTAAAGAAATTGTTCACGAAGTTGTCAGCAGAGCCAACCACAGCTGCTCAGCTGGTTGCTAAAGGAGCCAGCAATTTTTACTGGTTCTGAGGTTAGAATAATTGATGACGATGTCCCTTTGGCTCAATTTGCTATTG

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 26d library	3

Homology

[Close]

BLAST of WMU40687 vs. TAIR10
Match: AT3G02090.2 (AT3G02090.2 Insulinase (Peptidase family M16) protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSILPLVEPFLDLL*NIRTITKDHLQSYIQTHYTAPRM 155
           R+ + + G+  ++ L           PL    L    N+++IT++ LQ+YI+THYTA RM
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRM 279

Query: 156 VIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           VIAA+GAVKHE+ V QVKKLFTKLS++PTT +QLVA   ++F
Sbjct: 280 VIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASF 321

Query: 216  275
           
Sbjct: 340  321

Query: 276  335
           
Sbjct: 400  321

Query: 336  395
           
Sbjct: 460  321

Query: 396  402
           
Sbjct: 520  321

HSP 2 Score: 54.3 bits (129), Expect = 7.7e-08
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 1   DVPKALDILADILQNSKFDEHRISRERDVILRE 60
           +V +ALD+LADILQNSKF+E RI+RERDVILRE
Sbjct: 189 NVNQALDVLADILQNSKFEEQRINRERDVILRE 221

Query: 61   100
           
Sbjct: 249  221

HSP 3 Score: 45.4 bits (106), Expect = 3.6e-05
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 1


Query: 388 EPAIFTGSEVRIIDDDVPLAQFAI 447
           EPA FTGSEVR+IDDD+PLAQFA+
Sbjct: 317 EPASFTGSEVRMIDDDLPLAQFAV 340

Query: 448  460
           
Sbjct: 377  340

[Close]

BLAST of WMU40687 vs. Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At3g02090 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-18
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSILPLVEPFLDLL*NIRTITKDHLQSYIQTHYTAPRM 155
           R+ + + G+  ++ L           PL    L    N+++IT++ LQ+YI+THYTA RM
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRM 279

Query: 156 VIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           VIAA+GAVKHE+ V QVKKLFTKLS++PTT +QLVA   ++F
Sbjct: 280 VIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASF 321

Query: 216  275
           
Sbjct: 340  321

Query: 276  335
           
Sbjct: 400  321

Query: 336  395
           
Sbjct: 460  321

Query: 396  402
           
Sbjct: 520  321

HSP 2 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 1   DVPKALDILADILQNSKFDEHRISRERDVILRE 60
           +V +ALD+LADILQNSKF+E RI+RERDVILRE
Sbjct: 189 NVNQALDVLADILQNSKFEEQRINRERDVILRE 221

Query: 61   100
           
Sbjct: 249  221

HSP 3 Score: 45.4 bits (106), Expect = 6.3e-04
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 1


Query: 388 EPAIFTGSEVRIIDDDVPLAQFAI 447
           EPA FTGSEVR+IDDD+PLAQFA+
Sbjct: 317 EPASFTGSEVRMIDDDLPLAQFAV 340

Query: 448  460
           
Sbjct: 377  340

[Close]

BLAST of WMU40687 vs. Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pep PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 3


Query: 126 KKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTAPRMVIAASGA 185
           K+L   +   LH++     PL    L    NIR IT+  L +YI+ +YTA RMV+  +G 
Sbjct: 170 KQLEEVVFDHLHATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTADRMVLVGAGG 229

Query: 186 VKHEDFVGQVKKLFTKLSA-EPTTAAQLVAKGASNF 245
           V HE  V    K F+KL A  P ++A +++K   +F
Sbjct: 230 VPHEQLVEMADKYFSKLPATAPVSSASILSKKKPDF 265

Query: 246  305
           
Sbjct: 290  265

Query: 306  365
           
Sbjct: 350  265

Query: 366  402
           
Sbjct: 410  265

HSP 2 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1


Query: 1   DVPKALDILADILQNSKFDEHRISRERDVILREN 60
           DVPK +DIL DILQNSK +E  I RERDVILRE+
Sbjct: 132 DVPKCVDILQDILQNSKLEESAIERERDVILRES 165

Query: 61   103
           
Sbjct: 192  165

[Close]

BLAST of WMU40687 vs. Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-06
Identity = 35/97 (36.08%), Postives = 47/97 (48.45%), Query Frame = 3


Query: 126 KKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTAPRMVIAASGA 185
           K+L   +   LH+      PL    L    NI +I +D L SYIQT+YTA RMV+  +G 
Sbjct: 159 KQLEEVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTGG 218

Query: 186 VKHEDFVGQVKKLFTKL--SAEPTTAAQLVAKGASNF 245
           V H+  V   +K F+ L  SA P    +L ++    F
Sbjct: 219 VDHQSLVKLAEKHFSSLPVSANPLALGRLSSERKPTF 255

Query: 246  305
           
Sbjct: 279  255

Query: 306  365
           
Sbjct: 339  255

Query: 366  402
           
Sbjct: 399  255

HSP 2 Score: 48.1 bits (113), Expect = 9.8e-05
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 1   DVPKALDILADILQNSKFDEHRISRERDVILRE 60
           DVP A+DI++DILQNSK +   I RERDVILRE
Sbjct: 121 DVPVAVDIISDILQNSKLESGAIERERDVILRE 153

Query: 61   100
           
Sbjct: 181  153

[Close]

BLAST of WMU40687 vs. NCBI nr
Match: gi|661902917|ref|NP_001284394.1| (probable mitochondrial-processing peptidase subunit beta [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.5e-25
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTA 155
           R+   + G+ +++   I   LH++     PL    L    NIRTITKDHLQSYIQTHYTA
Sbjct: 217 REMEEVEGQTEEV---IFDHLHATAFQYTPLGRTILGPAQNIRTITKDHLQSYIQTHYTA 276

Query: 156 PRMVIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           PRMVIAASGAVKHEDFV QVKKLFTKLSAEPTTAAQLVAK  + F
Sbjct: 277 PRMVIAASGAVKHEDFVEQVKKLFTKLSAEPTTAAQLVAKEPAIF 318

Query: 216  275
           
Sbjct: 337  318

Query: 276  335
           
Sbjct: 397  318

Query: 336  395
           
Sbjct: 457  318

Query: 396  402
           
Sbjct: 517  318

[Close]

BLAST of WMU40687 vs. NCBI nr
Match: gi|659101564|ref|XP_008451674.1| (PREDICTED: probable mitochondrial-processing peptidase subunit beta isoform X2 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.5e-25
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTA 155
           R+   + G+ +++   I   LH++     PL    L    NIRTITKDHLQSYIQTHYTA
Sbjct: 217 REMEEVEGQTEEV---IFDHLHATAFQYTPLGRTILGPAQNIRTITKDHLQSYIQTHYTA 276

Query: 156 PRMVIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           PRMVIAASGAVKHEDFV QVKKLFTKLSAEPTTAAQLVAK  + F
Sbjct: 277 PRMVIAASGAVKHEDFVEQVKKLFTKLSAEPTTAAQLVAKEPAIF 318

Query: 216  275
           
Sbjct: 337  318

Query: 276  335
           
Sbjct: 397  318

Query: 336  395
           
Sbjct: 457  318

Query: 396  402
           
Sbjct: 517  318

[Close]

BLAST of WMU40687 vs. NCBI nr
Match: gi|449438845|ref|XP_004137198.1| (PREDICTED: probable mitochondrial-processing peptidase subunit beta [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-24
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTA 155
           R+   + G+ +++   I   LH++     PL    L    NIRTITKDHLQSYIQTHYTA
Sbjct: 217 REMEEVEGQTEEV---IFDHLHATAFQYTPLGRTILGPAQNIRTITKDHLQSYIQTHYTA 276

Query: 156 PRMVIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           PRMVIAASGAVKHEDFV QVKKLFT+LSAEPTTA QLVAK  + F
Sbjct: 277 PRMVIAASGAVKHEDFVEQVKKLFTQLSAEPTTATQLVAKEPAIF 318

Query: 216  275
           
Sbjct: 337  318

Query: 276  335
           
Sbjct: 397  318

Query: 336  395
           
Sbjct: 457  318

Query: 396  402
           
Sbjct: 517  318

[Close]

BLAST of WMU40687 vs. NCBI nr
Match: gi|1012209767|ref|XP_015932809.1| (PREDICTED: probable mitochondrial-processing peptidase subunit beta, mitochondrial [Arachis duranensis])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 3


Query: 96  RKWRRLRGKPKKLSLTICTQLHSSIL---PLVEPFLDLL*NIRTITKDHLQSYIQTHYTA 155
           R+   + G+ +++   I   LH++     PL    L    NI+TITKDHLQ+YIQTHYTA
Sbjct: 219 REMEEVEGQTEEV---IFDHLHATAFQYTPLGRTILGPAQNIKTITKDHLQNYIQTHYTA 278

Query: 156 PRMVIAASGAVKHEDFVGQVKKLFTKLSAEPTTAAQLVAKGASNF 215
           PRMVIAASGAVKHED V QVKKLFTKLS +PTTA+QLVAK  + F
Sbjct: 279 PRMVIAASGAVKHEDIVEQVKKLFTKLSTDPTTASQLVAKEPAIF 320

Query: 216  275
           
Sbjct: 339  320

Query: 276  335
           
Sbjct: 399  320

Query: 336  395
           
Sbjct: 459  320

Query: 396  402
           
Sbjct: 519  320

[Close]

BLAST of WMU40687 vs. NCBI nr
Match: gi|593263974|ref|XP_007134165.1| (hypothetical protein PHAVU_010G024900g [Phaseolus vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 3


Query: 174 PLVEPFLDLL*NIRTITKDHLQSYIQTHYTAPRMVIAASGAVKHEDFVGQVKKLFTKLSA 233
           PL    L    NIRTITKDHLQ+YIQTHYTAPRMV+AASGAVKHE+ V QVK LFTKLS 
Sbjct: 236 PLGRTILGPAQNIRTITKDHLQNYIQTHYTAPRMVVAASGAVKHEEIVEQVKTLFTKLST 295

Query: 234 EPTTAAQLVAKGASNF 293
           +PTTA+QLVAK  +NF
Sbjct: 296 DPTTASQLVAKEPANF 311

Query: 294  353
           
Sbjct: 356  311

Query: 354  402
           
Sbjct: 416  311

The following BLAST results are available for this feature:

BLAST of WMU40687 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02090.2	1.9e-19	48.04	Insulinase (Peptidase family M16) protein	[more]

BLAST of WMU40687 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MPPB_ARATH	3.4e-18	48.04	Probable mitochondrial-processing peptidase subunit beta, mitochondrial OS=Arabi...	[more]
MPPB_NEUCR	2.1e-07	36.46	Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa (strain ATC...	[more]
MPPB_LENED	5.1e-06	36.08	Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3...	[more]

BLAST of WMU40687 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661902917\|ref\|NP_001284394.1\|	6.5e-25	64.76	probable mitochondrial-processing peptidase subunit beta [Cucumis melo]	[more]
gi\|659101564\|ref\|XP_008451674.1\|	6.5e-25	64.76	PREDICTED: probable mitochondrial-processing peptidase subunit beta isoform X2 [...	[more]
gi\|449438845\|ref\|XP_004137198.1\|	5.5e-24	62.86	PREDICTED: probable mitochondrial-processing peptidase subunit beta [Cucumis sat...	[more]
gi\|1012209767\|ref\|XP_015932809.1\|	2.3e-22	59.05	PREDICTED: probable mitochondrial-processing peptidase subunit beta, mitochondri...	[more]
gi\|593263974\|ref\|XP_007134165.1\|	5.1e-22	73.68	hypothetical protein PHAVU_010G024900g [Phaseolus vulgaris]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla001475	Cla001475	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0105100	S1_0105100	EST
S3_0129161	S3_0129161	EST
S3_0148508	S3_0148508	EST
S3_0154480	S3_0154480	EST