WMU40676 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40676
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pinoresinol-lariciresinol reductase-like protein
Location	Chr7 : 56371 .. 57929 (+)
Sequence length	331

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGAACTCATTGAGAAATGGGAAAAGCTTTCTGGAAAAGTAACTGGAAAAGAACGAGTGTTTCTGCTCAAGACTTTCTTGCCAGGATGAAAGATGTGGACAGAGCACAGCAGGCTGGATTGGGACATTTTTATCACATATTCTTTGAAGGTTGTACGACAAATTTTGAAATAGGAGAAGGGGAAGAAGAAGCTTCTAAGCTTTTTCCAGAAGTGAATTACACTCGCATGGATGATTATCTCAAGATCTTTCTATAAACAAATCAAACAAGTGAAGCTTATTAATTAATCACACTTAATTTGTAACTTTTTTTTTTTTTTATTATATCTACT

Library


Library category	ESTs
watermelon fruit 10d library	5

Homology

[Close]

BLAST of WMU40676 vs. TAIR10
Match: AT1G32100.1 (AT1G32100.1 pinoresinol reductase 1)

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-20
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++T+++AQDFLA ++ ++   QAG+GHFYHIF+EGC T+ E+GE +EEAS L+P+V Y R
Sbjct: 250 EKTNIAAQDFLANIEQMEIPHQAGIGHFYHIFYEGCLTDHEVGE-DEEASSLYPDVKYKR 309

Query: 107 MDDYLKIFL 166
           MDDYL++FL
Sbjct: 310 MDDYLRMFL 317

Query: 167  226
           
Sbjct: 370  317

Query: 227  254
           
Sbjct: 430  317

[Close]

BLAST of WMU40676 vs. TAIR10
Match: AT4G13660.1 (AT4G13660.1 pinoresinol reductase 2)

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++T VS  DFLA ++D + + QAGLGHFYHI++EGC T+ E+G+ +EEA+KL+P+V Y R
Sbjct: 250 EKTYVSGNDFLADIEDKEISHQAGLGHFYHIYYEGCLTDHEVGD-DEEATKLYPDVKYKR 309

Query: 107 MDDYLKIFL 166
           MD+YLKIF+
Sbjct: 310 MDEYLKIFV 317

Query: 167  226
           
Sbjct: 370  317

Query: 227  254
           
Sbjct: 430  317

[Close]

BLAST of WMU40676 vs. Swiss-Prot
Match: IFRH_LUPAL (Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++ S+S +DFL+ +K +D A Q G+GHFYHIF+EGC TNFEIGE  EEAS+L+PEVNYTR
Sbjct: 244 EKNSISEKDFLSTLKGLDFASQVGVGHFYHIFYEGCLTNFEIGENGEEASELYPEVNYTR 303

Query: 107 MDDYLKIFL 166
           MD YLK+++
Sbjct: 304 MDQYLKVYV 312

Query: 167  226
           
Sbjct: 364  312

Query: 227  254
           
Sbjct: 424  312

[Close]

BLAST of WMU40676 vs. Swiss-Prot
Match: PILR1_LINPE (Bifunctional pinoresinol-lariciresinol reductase OS=Linum perenne GN=PLR_Lp1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIG--EGEEEASKLFPEVNY 106
           ++  +  QDFLA M+    A+QAG+GHFYHIF+EGC TNFEI    GEEEAS+L+PEV Y
Sbjct: 244 EKIELPPQDFLALMEGTTVAEQAGIGHFYHIFYEGCLTNFEINAENGEEEASRLYPEVEY 303

Query: 107 TRMDDYLKIFL 166
           TR+ DYLKI+L
Sbjct: 304 TRVHDYLKIYL 314

Query: 167  226
           
Sbjct: 364  314

Query: 227  254
           
Sbjct: 424  314

[Close]

BLAST of WMU40676 vs. Swiss-Prot
Match: PILR1_ARATH (Pinoresinol reductase 1 OS=Arabidopsis thaliana GN=PRR1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++T+++AQDFLA ++ ++   QAG+GHFYHIF+EGC T+ E+GE +EEAS L+P+V Y R
Sbjct: 250 EKTNIAAQDFLANIEQMEIPHQAGIGHFYHIFYEGCLTDHEVGE-DEEASSLYPDVKYKR 309

Query: 107 MDDYLKIFL 166
           MDDYL++FL
Sbjct: 310 MDDYLRMFL 317

Query: 167  226
           
Sbjct: 370  317

Query: 227  254
           
Sbjct: 430  317

[Close]

BLAST of WMU40676 vs. Swiss-Prot
Match: PILR2_ARATH (Pinoresinol reductase 2 OS=Arabidopsis thaliana GN=PRR2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++T VS  DFLA ++D + + QAGLGHFYHI++EGC T+ E+G+ +EEA+KL+P+V Y R
Sbjct: 250 EKTYVSGNDFLADIEDKEISHQAGLGHFYHIYYEGCLTDHEVGD-DEEATKLYPDVKYKR 309

Query: 107 MDDYLKIFL 166
           MD+YLKIF+
Sbjct: 310 MDEYLKIFV 317

Query: 167  226
           
Sbjct: 370  317

Query: 227  254
           
Sbjct: 430  317

[Close]

BLAST of WMU40676 vs. Swiss-Prot
Match: PILR2_LINUS (Bifunctional pinoresinol-lariciresinol reductase 2 OS=Linum usitatissimum GN=PLR_Lu2 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           K+T++S ++FLA MK+ D A+Q GL H+YH+ +EGC TNFEIG+   EA+KL+PEV YT 
Sbjct: 262 KKTTLSVEEFLAMMKEQDYAEQVGLTHYYHVCYEGCLTNFEIGDEAGEATKLYPEVGYTT 321

Query: 107 MDDYLKIFL 166
           + +Y+K ++
Sbjct: 322 VVEYMKRYV 330

Query: 167  226
           
Sbjct: 382  330

Query: 227  254
           
Sbjct: 442  330

[Close]

BLAST of WMU40676 vs. NCBI nr
Match: gi|449453322|ref|XP_004144407.1| (PREDICTED: isoflavone reductase homolog [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-24
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++ SVSAQDFLA+++D+D AQQ+G GHFY IFFEGC TNFEIGEG EEASKLFPEVNYT 
Sbjct: 241 EKISVSAQDFLAKIEDLDEAQQSGAGHFYDIFFEGCLTNFEIGEGAEEASKLFPEVNYTT 300

Query: 107 MDDYLKIFL 166
           MDDYLKIFL
Sbjct: 301 MDDYLKIFL 309

Query: 167  226
           
Sbjct: 361  309

Query: 227  254
           
Sbjct: 421  309

[Close]

BLAST of WMU40676 vs. NCBI nr
Match: gi|659120967|ref|XP_008460437.1| (PREDICTED: isoflavone reductase homolog [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-24
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++ SVSAQDFLA +KD+D AQQAG GHFY IFF+GC TNFEIGE  EEASKLFPEVNYT 
Sbjct: 241 EKISVSAQDFLANIKDLDEAQQAGAGHFYEIFFKGCLTNFEIGEAAEEASKLFPEVNYTT 300

Query: 107 MDDYLKIFL 166
           MDDYLKIFL
Sbjct: 301 MDDYLKIFL 309

Query: 167  226
           
Sbjct: 361  309

Query: 227  254
           
Sbjct: 421  309

[Close]

BLAST of WMU40676 vs. NCBI nr
Match: gi|590680150|ref|XP_007040782.1| (Isoflavone reductase isoform 1 [Theobroma cacao])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++ S+SAQDFLA MK +D A Q G+GHFYHIF+EGC TNFEIGEG EEAS+L+PEV YTR
Sbjct: 244 EKISISAQDFLASMKGLDFAGQVGVGHFYHIFYEGCLTNFEIGEGVEEASRLYPEVEYTR 303

Query: 107 MDDYLKIFL 166
           MDDYLKI++
Sbjct: 304 MDDYLKIYI 312

Query: 167  226
           
Sbjct: 364  312

Query: 227  254
           
Sbjct: 424  312

[Close]

BLAST of WMU40676 vs. NCBI nr
Match: gi|590680154|ref|XP_007040783.1| (Pinoresinol reductase 1 isoform 2 [Theobroma cacao])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           ++ S+SAQDFLA MK +D A Q G+GHFYHIF+EGC TNFEIGEG EEAS+L+PEV YTR
Sbjct: 153 EKISISAQDFLASMKGLDFAGQVGVGHFYHIFYEGCLTNFEIGEGVEEASRLYPEVEYTR 212

Query: 107 MDDYLKIFL 166
           MDDYLKI++
Sbjct: 213 MDDYLKIYI 221

Query: 167  226
           
Sbjct: 273  221

Query: 227  254
           
Sbjct: 333  221

[Close]

BLAST of WMU40676 vs. NCBI nr
Match: gi|920702158|gb|KOM45383.1| (hypothetical protein LR48_Vigan06g068900 [Vigna angularis])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 2


Query: 47  KRTSVSAQDFLARMKDVDRAQQAGLGHFYHIFFEGCTTNFEIGEGEEEASKLFPEVNYTR 106
           +++S++ QDFLA MK +D A Q G+GHFYHIF+EGC TNFEIGEG EEAS L+PEVNYTR
Sbjct: 244 EKSSINEQDFLASMKGLDYATQVGVGHFYHIFYEGCLTNFEIGEGGEEASTLYPEVNYTR 303

Query: 107 MDDYLKIFL 166
           MD+YLK+++
Sbjct: 304 MDEYLKVYV 312

Query: 167  226
           
Sbjct: 364  312

Query: 227  254
           
Sbjct: 424  312

The following BLAST results are available for this feature:

BLAST of WMU40676 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32100.1	8.2e-20	57.97	pinoresinol reductase 1	[more]
AT4G13660.1	6.9e-19	57.97	pinoresinol reductase 2	[more]

BLAST of WMU40676 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IFRH_LUPAL	1.4e-21	63.77	Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1	[more]
PILR1_LINPE	1.1e-18	61.97	Bifunctional pinoresinol-lariciresinol reductase OS=Linum perenne GN=PLR_Lp1 PE=...	[more]
PILR1_ARATH	1.5e-18	57.97	Pinoresinol reductase 1 OS=Arabidopsis thaliana GN=PRR1 PE=1 SV=1	[more]
PILR2_ARATH	1.2e-17	57.97	Pinoresinol reductase 2 OS=Arabidopsis thaliana GN=PRR2 PE=1 SV=1	[more]
PILR2_LINUS	4.0e-16	52.17	Bifunctional pinoresinol-lariciresinol reductase 2 OS=Linum usitatissimum GN=PLR...	[more]

BLAST of WMU40676 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453322\|ref\|XP_004144407.1\|	1.8e-24	79.71	PREDICTED: isoflavone reductase homolog [Cucumis sativus]	[more]
gi\|659120967\|ref\|XP_008460437.1\|	5.2e-24	79.71	PREDICTED: isoflavone reductase homolog [Cucumis melo]	[more]
gi\|590680150\|ref\|XP_007040782.1\|	2.2e-22	72.46	Isoflavone reductase isoform 1 [Theobroma cacao]	[more]
gi\|590680154\|ref\|XP_007040783.1\|	2.2e-22	72.46	Pinoresinol reductase 1 isoform 2 [Theobroma cacao]	[more]
gi\|920702158\|gb\|KOM45383.1\|	1.4e-21	68.12	hypothetical protein LR48_Vigan06g068900 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002685	Cla002685	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0039500	S1_0039500	EST
S1_0062071	S1_0062071	EST
S1_0081867	S1_0081867	EST
S1_0116047	S1_0116047	EST
S1_0141640	S1_0141640	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.25.10		coord: 10..79 score: 9.6