WMU40669 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40669
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Endonuclease or glycosyl hydrolase
Location	Chr5 : 10480670 .. 10481449 (+)
Sequence length	783

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACTCGAGATCATGCCCAACGCGCCCCGCCTTTGATATTATCAAGGAAAGAAATAAGAAAGGTAAGGGTACTTTGGAGGAGACTGCTGATGTTGCTCCAGGCATGGGCTCATCAGACGAATACTCGGATGAAGAAAGAGTGGTCTTGAAGAACACAATGAGAAGAAAGGTGTAGGAAAAACCGACCAGACATCAGCAGGTCAATGCAGAAACAACGAAGAATGCTGTATTGAGCAGTTCAAACATGAGCTACAGGAGATTCTCGTTAGCTATTCTTGTAGAATCTTCTTAGGATGTTTTGAGGCAATATACCTACAGCGATACAAGAAAAATTTGGACTTCCAGAGCCTCGGGGTTCGTGGATTGGAGGAGTTGTTTGACAAAGTAAACGACGTAGTGGTCTTGCATGAAGATCCAGCAAGCAAGCGAAAGTTCCTGGCTGCATTTGGTGGCTGAAATGGTGATGAAGATGGTCAGATAGCTGCCTTTGTAACCATTCTATGTCATTAACTTGTCAAATACCCACAAAAGAAATAAGAAAAAGAAGCCAAGTTTGTTGTGAATGCTGCCTGCCACTTAGTTTTAGAAAGTAGAGTATGGCAGAGGCTGGTTGCTGTTTTTTCTTCCTCCAGCATCTTCTTTGTCCTCTTTTAACATATGGAACCTGTCATTGTAAGTCTCTTTACCTGATGATCTGCTTTTAGGAGATCTGTGTCTTTGTCTGTAAATTACTTTCCACTCAAGTTTTAAGATCAATATAGGTTCTTTCTTTCCACTTCAAAGT

Library


Library category	ESTs
Watermelon normalization and subtraction library	1
watermelon fruit 10d library	2
watermelon fruit 18d library	2
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU40669 vs. TAIR10
Match: AT2G15560.1 (AT2G15560.1 Putative endonuclease or glycosyl hydrolase)

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-19
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 3


Query: 168 GVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRYKKNLDFQS 227
           GV   + +  G  ++     +E+FK ELQ+ILVSY C++ + CFEAIY  RYK+ L + +
Sbjct: 399 GVSSDEMSDTGSVQSERN--LEEFKFELQDILVSYCCQVQMDCFEAIYKLRYKRPLAYTN 458

Query: 228 LGVRGLEELFDKVNDVVVLHEDPASKRKFLA 287
           +GV  LE+LFDK+ DVV +HEDPA+ RK ++
Sbjct: 459 MGVNHLEQLFDKLRDVVAIHEDPATGRKLIS 487

Query: 288  347
           
Sbjct: 519  487

Query: 348  407
           
Sbjct: 579  487

Query: 408  441
           
Sbjct: 639  487

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BLAST of WMU40669 vs. NCBI nr
Match: gi|449445872|ref|XP_004140696.1| (PREDICTED: uncharacterized protein LOC101217738 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 3.9e-46
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 3


Query: 147 EEHNEKKGVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRYK 206
           EEH+EKKGVGKT+QT A QC+NNE CCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRYK
Sbjct: 406 EEHDEKKGVGKTNQTPADQCKNNEACCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRYK 465

Query: 207 KNLDFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAFGG 266
           K+L+FQSLGVRGLEELFDKVNDVVVLHEDP+SKRKFLAA GG
Sbjct: 466 KSLNFQSLGVRGLEELFDKVNDVVVLHEDPSSKRKFLAAIGG 507

Query: 267  326
           
Sbjct: 526  507

Query: 327  386
           
Sbjct: 586  507

Query: 387  446
           
Sbjct: 646  507

Query: 447  453
           
Sbjct: 706  507

[Close]

BLAST of WMU40669 vs. NCBI nr
Match: gi|659112209|ref|XP_008456116.1| (PREDICTED: uncharacterized protein LOC103496152 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 3.7e-44
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 3


Query: 147 EEHNEKKGVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRYK 206
           EEH+EKKG GKT++T A QC+NNEE CIE FKHELQEILVSYSCRIFLGCFEAIYLQRYK
Sbjct: 406 EEHDEKKGAGKTNETPADQCKNNEERCIELFKHELQEILVSYSCRIFLGCFEAIYLQRYK 465

Query: 207 KNLDFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAFGG 266
           K+L+FQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAA GG
Sbjct: 466 KSLNFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAIGG 507

Query: 267  326
           
Sbjct: 526  507

Query: 327  386
           
Sbjct: 586  507

Query: 387  446
           
Sbjct: 646  507

Query: 447  453
           
Sbjct: 706  507

[Close]

BLAST of WMU40669 vs. NCBI nr
Match: gi|951014579|ref|XP_014510599.1| (PREDICTED: uncharacterized protein LOC106769481 [Vigna radiata var. radiata])

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 3


Query: 144 LEEHNEKKGVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRY 203
           +EEH+E+   GK +Q SA +C   ++C IE FK+ELQEILVSYSCRIFLGCFEAIY QRY
Sbjct: 431 IEEHDERSCTGKGNQESAAKCEV-DDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRY 490

Query: 204 KKNLDFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAFGG 263
           KK L++Q  GV  LE+LF+KV+DVVVLHE+P S++KFLAA GG
Sbjct: 491 KKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSRKKFLAAVGG 532

Query: 264  323
           
Sbjct: 551  532

Query: 324  383
           
Sbjct: 611  532

Query: 384  443
           
Sbjct: 671  532

Query: 444  453
           
Sbjct: 731  532

[Close]

BLAST of WMU40669 vs. NCBI nr
Match: gi|920710814|gb|KOM52063.1| (hypothetical protein LR48_Vigan09g072200 [Vigna angularis])

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 3


Query: 144 LEEHNEKKGVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRY 203
           +EEH+E+   GK +Q SA +C   ++C IE FK+ELQEILVSYSCRIFLGCFEAIY QRY
Sbjct: 430 IEEHDERSCTGKGNQESAAKCEV-DDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRY 489

Query: 204 KKNLDFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAFGG 263
           KK L++Q  GV  LE+LF+KV+DVVVLHE+P S++KFLAA GG
Sbjct: 490 KKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSRKKFLAAVGG 531

Query: 264  323
           
Sbjct: 550  531

Query: 324  383
           
Sbjct: 610  531

Query: 384  443
           
Sbjct: 670  531

Query: 444  453
           
Sbjct: 730  531

[Close]

BLAST of WMU40669 vs. NCBI nr
Match: gi|965658551|dbj|BAT74970.1| (hypothetical protein VIGAN_01275800 [Vigna angularis var. angularis])

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 3


Query: 144 LEEHNEKKGVGKTDQTSAGQCRNNEECCIEQFKHELQEILVSYSCRIFLGCFEAIYLQRY 203
           +EEH+E+   GK +Q SA +C   ++C IE FK+ELQEILVSYSCRIFLGCFEAIY QRY
Sbjct: 430 IEEHDERSCTGKGNQESAAKCEV-DDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRY 489

Query: 204 KKNLDFQSLGVRGLEELFDKVNDVVVLHEDPASKRKFLAAFGG 263
           KK L++Q  GV  LE+LF+KV+DVVVLHE+P S++KFLAA GG
Sbjct: 490 KKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSRKKFLAAVGG 531

Query: 264  323
           
Sbjct: 550  531

Query: 324  383
           
Sbjct: 610  531

Query: 384  443
           
Sbjct: 670  531

Query: 444  453
           
Sbjct: 730  531

The following BLAST results are available for this feature:

BLAST of WMU40669 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15560.1	4.3e-19	47.25	Putative endonuclease or glycosyl hydrolase	[more]

BLAST of WMU40669 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445872\|ref\|XP_004140696.1\|	3.9e-46	90.20	PREDICTED: uncharacterized protein LOC101217738 [Cucumis sativus]	[more]
gi\|659112209\|ref\|XP_008456116.1\|	3.7e-44	88.24	PREDICTED: uncharacterized protein LOC103496152 [Cucumis melo]	[more]
gi\|951014579\|ref\|XP_014510599.1\|	3.0e-30	66.02	PREDICTED: uncharacterized protein LOC106769481 [Vigna radiata var. radiata]	[more]
gi\|920710814\|gb\|KOM52063.1\|	3.0e-30	66.02	hypothetical protein LR48_Vigan09g072200 [Vigna angularis]	[more]
gi\|965658551\|dbj\|BAT74970.1\|	3.0e-30	66.02	hypothetical protein VIGAN_01275800 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR024768	Marf1
IPR025605	OST-HTH/LOTUS_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005777	peroxisome

Vocabulary: **Biological Process**
Term	Definition
GO:0010468	regulation of gene expression

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005777	peroxisome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013061	Cla013061	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
AL0106G07	AL0106G07	EST
S1_0031439	S1_0031439	EST
S1_0050090	S1_0050090	EST
S2_0037787	S2_0037787	EST
S2_0052121	S2_0052121	EST
S4_0058739	S4_0058739	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024768	Meiosis arrest female protein 1	PANTHER	PTHR14379	LIMKAIN B LKAP	coord: 77..148 score: 2.3
IPR025605	OST-HTH/LOTUS domain	PFAM	PF12872	OST-HTH	coord: 78..142 score: 1.
IPR025605	OST-HTH/LOTUS domain	PROFILE	PS51644	HTH_OST	coord: 76..150 score: 14