WMU40666 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40666
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Plant/F18O14-17 protein
Location	Chr8 : 24216790 .. 24217378 (+)
Sequence length	589

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGCCAAGAAGAAGGAGGCGCTCACATCATGGGGACCCGACGACCCTTTTACTGCCACTTCACCAACTACTGGAGCTCCAATGGGAACTGGATCCAGCGAGCGAGCATCTTTCATAGACACTCCTTCAAGAAGTACTGACATGATGGATCTCAGAAGTGGTGGTGGCCTAAGAGGACCACCGCGGCGTTATGGTTCTCCTACAGGGTATCCTGGTGGGGCAACAAGTTCCTTTAGGCCAGCTACGTCTAGTGACCACACCTCGAGACCGGCTGCAGTTGATCCAAATTATAGAGCAGCCTCTGAGCTAAAATTCAGGGGCTCACCTTTAGAACCTCCAGGATTTCCAAAACGACGGGAGCCTCTATTTGCAAACAATCAAGTGGTCAATCAGGTGGTGGATGAAAGCAGTTAAAAGGTAACTAGATATCAGCTAGAAATCTTTGCTTCAAAGAGTTTTCAAGTTCCTGAATCCTGGTTAGTTTTCTTTTTTCCTGATTGCTTGTTTGTTGGTTGGGTATGAATGCGTTTGATCTTGCAATATATTTATATCTCTGTTTTGTAGTTGCATACAAAGCAAAAGAAAAAAATA

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1
watermelon fruit 26d library	2

Homology

[Close]

BLAST of WMU40666 vs. TAIR10
Match: AT1G75140.1 (AT1G75140.1 unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-16
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           +KKKE+LT+WGPDDPF++T  T  +   T +   ++F ++  R+ D MD           
Sbjct: 494 SKKKESLTAWGPDDPFSST--TMSSSSTTTAQNSSAFSESTRRNDDHMDLRRRYVSPSRY 553

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYR-AASELKFR-GSPLEPPGFPKRR 121
                    PG AT ++R   S+D +SR      NYR  A E+K+R GS L+  GF KRR
Sbjct: 554 P--------PGAATGAYRSVGSNDPSSRAPVETTNYRTTAQEMKYRGGSGLDSGGFGKRR 613

Query: 122 EPLFANNQVVNQVVDES 181
           E LF NN+ ++   DES
Sbjct: 614 ESLFGNNKALD---DES 617

Query: 182  241
           
Sbjct: 674  617

Query: 242  301
           
Sbjct: 734  617

Query: 302  361
           
Sbjct: 794  617

Query: 362  407
           
Sbjct: 854  617

[Close]

BLAST of WMU40666 vs. TAIR10
Match: AT1G19370.1 (AT1G19370.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 50/133 (37.59%), Postives = 68/133 (51.13%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           AKKKE+LT+WGPDDPFT     TGA     S++  +F +   R+ D+MD           
Sbjct: 495 AKKKESLTAWGPDDPFT----PTGAQ--NSSAKEPTFTEPSRRNDDLMDLRRR------- 554

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASE----LKFRGSPLEPPGFPK 121
                   Y GG   S+R   ++D +SR A VD NYR  ++     +  GS L+  GF  
Sbjct: 555 --------YAGG---SYRSVGANDPSSR-APVDGNYRTTAQDHNNYRGGGSGLDSNGFGN 602

Query: 122 RREPLFANNQVVN 181
           RR+ LF NN+V++
Sbjct: 615 RRDHLFGNNKVLD 602

Query: 182  241
           
Sbjct: 675  602

Query: 242  301
           
Sbjct: 735  602

Query: 302  361
           
Sbjct: 795  602

Query: 362  389
           
Sbjct: 855  602

[Close]

BLAST of WMU40666 vs. Swiss-Prot
Match: Y1514_ARATH (Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana GN=At1g75140 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-14
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           +KKKE+LT+WGPDDPF++T  T  +   T +   ++F ++  R+ D MD           
Sbjct: 494 SKKKESLTAWGPDDPFSST--TMSSSSTTTAQNSSAFSESTRRNDDHMDLRRRYVSPSRY 553

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYR-AASELKFR-GSPLEPPGFPKRR 121
                    PG AT ++R   S+D +SR      NYR  A E+K+R GS L+  GF KRR
Sbjct: 554 P--------PGAATGAYRSVGSNDPSSRAPVETTNYRTTAQEMKYRGGSGLDSGGFGKRR 613

Query: 122 EPLFANNQVVNQVVDES 181
           E LF NN+ ++   DES
Sbjct: 614 ESLFGNNKALD---DES 617

Query: 182  241
           
Sbjct: 674  617

Query: 242  301
           
Sbjct: 734  617

Query: 302  361
           
Sbjct: 794  617

Query: 362  407
           
Sbjct: 854  617

[Close]

BLAST of WMU40666 vs. NCBI nr
Match: gi|659087906|ref|XP_008444699.1| (PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 9.1e-56
Identity = 114/136 (83.82%), Postives = 119/136 (87.50%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTD+MD           
Sbjct: 518 AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDVMDLRGGGGLRGPA 577

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 121
                 TGYPGGATSSFRPAT+SDH+SRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP
Sbjct: 578 RRYGSPTGYPGGATSSFRPATTSDHSSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 637

Query: 122 LFANNQVVNQVVDESS 181
           LFANNQVVNQVVD+S+
Sbjct: 638 LFANNQVVNQVVDDSN 653

Query: 182  241
           
Sbjct: 698  653

Query: 242  301
           
Sbjct: 758  653

Query: 302  361
           
Sbjct: 818  653

Query: 362  410
           
Sbjct: 878  653

[Close]

BLAST of WMU40666 vs. NCBI nr
Match: gi|778671300|ref|XP_011649613.1| (PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 4.5e-55
Identity = 113/136 (83.09%), Postives = 118/136 (86.76%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTD+MD           
Sbjct: 518 AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDVMDLRSAGGLRGPP 577

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 121
                 TGYP GATSSFRPAT++DH+SRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP
Sbjct: 578 RRYGSPTGYPAGATSSFRPATTNDHSSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 637

Query: 122 LFANNQVVNQVVDESS 181
           LFANNQVVNQVVD+SS
Sbjct: 638 LFANNQVVNQVVDDSS 653

Query: 182  241
           
Sbjct: 698  653

Query: 242  301
           
Sbjct: 758  653

Query: 302  361
           
Sbjct: 818  653

Query: 362  410
           
Sbjct: 878  653

[Close]

BLAST of WMU40666 vs. NCBI nr
Match: gi|778671312|ref|XP_011649617.1| (PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 8.0e-44
Identity = 94/134 (70.15%), Postives = 108/134 (80.60%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           +KKKEA TSWGPD+PF+ATSPT+ APMGT S+ R+SF DTPSRSTDMMD           
Sbjct: 493 SKKKEAFTSWGPDEPFSATSPTSVAPMGTVSNNRSSFTDTPSRSTDMMDIRGGGGLRGPP 552

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 121
                 T YP GAT+SFRPAT+++H+S  +A+DPNYRAASELKFRGSPLEPPGFPKRREP
Sbjct: 553 RRYGSPTRYPVGATTSFRPATTNNHSSSRSAIDPNYRAASELKFRGSPLEPPGFPKRREP 612

Query: 122 LFANNQVVNQVVDE 181
           LFANNQVV+QVVDE
Sbjct: 613 LFANNQVVSQVVDE 626

Query: 182  241
           
Sbjct: 673  626

Query: 242  301
           
Sbjct: 733  626

Query: 302  361
           
Sbjct: 793  626

Query: 362  404
           
Sbjct: 853  626

[Close]

BLAST of WMU40666 vs. NCBI nr
Match: gi|743925235|ref|XP_011006751.1| (PREDICTED: uncharacterized membrane protein At1g75140-like [Populus euphratica])

HSP 1 Score: 142.9 bits (359), Expect = 6.0e-31
Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           AKKKEALTSWGPDDPF++TS TTGAP+G+ +S   SF+D+ SRS+DMMD           
Sbjct: 594 AKKKEALTSWGPDDPFSSTSATTGAPLGSSASADRSFVDSSSRSSDMMDLRASGLRPRSR 653

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 121
                   Y GGATSSFRP +S+D ++RP +VDPNYRA+S+LKFRG  LE  G+PKRRE 
Sbjct: 654 GYPSPPR-YTGGATSSFRP-SSTDASARPTSVDPNYRASSDLKFRGPALESTGYPKRREN 713

Query: 122 LFANNQVVN 181
           L+ANNQVV+
Sbjct: 714 LYANNQVVD 720

Query: 182  241
           
Sbjct: 774  720

Query: 242  301
           
Sbjct: 834  720

Query: 302  361
           
Sbjct: 894  720

Query: 362  389
           
Sbjct: 954  720

[Close]

BLAST of WMU40666 vs. NCBI nr
Match: gi|1021532458|ref|XP_016163193.1| (PREDICTED: uncharacterized membrane protein At1g75140 [Arachis ipaensis])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 2


Query: 2   AKKKEALTSWGPDDPFTATSPTTGAPMGTGSSERASFIDTPSRSTDMMDXXXXXXXXXXX 61
           AKKKEALTSWGPDDPF++TS  TGAP+ +GS +R SF+D+ SRS ++MD           
Sbjct: 531 AKKKEALTSWGPDDPFSSTSAPTGAPLASGSGDR-SFVDSSSRSAEVMD-LRGGPLRGPS 590

Query: 62  XXXXXXTGYPGGATSSFRPATSSDHTSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREP 121
                 + YPGGATSS+R   S+DH  RPA+VDP++R ASELK+R + +EPPGFPKRR+P
Sbjct: 591 RRYGSPSRYPGGATSSYR-LGSADHNPRPASVDPDFRGASELKYRATTMEPPGFPKRRDP 650

Query: 122 LFANNQVVN 181
           LFA NQ  N
Sbjct: 651 LFAGNQGAN 656

Query: 182  241
           
Sbjct: 711  656

Query: 242  301
           
Sbjct: 771  656

Query: 302  361
           
Sbjct: 831  656

Query: 362  389
           
Sbjct: 891  656

The following BLAST results are available for this feature:

BLAST of WMU40666 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75140.1	5.7e-16	38.69	unknown protein	[more]
AT1G19370.1	3.0e-12	37.59	unknown protein	[more]

BLAST of WMU40666 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1514_ARATH	1.0e-14	38.69	Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana GN=At1g75140 ...	[more]

BLAST of WMU40666 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087906\|ref\|XP_008444699.1\|	9.1e-56	83.82	PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis melo]	[more]
gi\|778671300\|ref\|XP_011649613.1\|	4.5e-55	83.09	PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus]	[more]
gi\|778671312\|ref\|XP_011649617.1\|	8.0e-44	70.15	PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus]	[more]
gi\|743925235\|ref\|XP_011006751.1\|	6.0e-31	59.69	PREDICTED: uncharacterized membrane protein At1g75140-like [Populus euphratica]	[more]
gi\|1021532458\|ref\|XP_016163193.1\|	1.1e-29	57.36	PREDICTED: uncharacterized membrane protein At1g75140 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla022503	Cla022503	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0076033	S1_0076033	EST
S1_0106245	S1_0106245	EST
S2_0167920	S2_0167920	EST
S3_0115926	S3_0115926	EST
S3_0156614	S3_0156614	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35464	FAMILY NOT NAMED	coord: 2..133 score: 2.2