WMU40073 (transcribed_cluster) Watermelon (97103) v1

NameWMU40073
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr10 : 24733832 .. 24734257 (-)
Sequence length430
The following sequences are available for this feature:

transcribed_cluster sequence

CTGTCCACCTACTAGAGAAAAGCATGAGGGGAAGAGAAGAGCATCAAGGTACCTCATTCAACGACCATCGATTGAAGTGAATGAATCTGCAAACCCAGTTGGCCTTGATGGTATGCTGCCCTTACTGTCTTGCAGATCGACATAACTGAAATCGCTCCCTTCGGATTCTTGCCATCCCCTTCACCATTTTGGTTAAGGGGTAGGCTATAGTCAATTCCAGAGTACTCCTCTGTGTCGTCATCAATTGGCTTTCCATTTTTCGTACGAGTGGAGCAAGGACATTTACAGCATACCCCATATCAGGTCGTTGGGTAGGCTCCCTTGCAGTGCAATGTCCAGCTAATTCAGCAATTATGCAAAATGCTTTCAGATATATCTTCTTTACAACCCAAGCTTGGATCCACAGCAGCCATCAGCTTCTCCTTGTCTG
BLAST of WMU40073 vs. TAIR10
Match: AT3G23750.1 (AT3G23750.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-10
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = -1

Query: 224 IAELAGHCTAREPTQRPDMGYAVNVLAPLVRKMESQLMTTQRS 283
           +AELAGHCTAREP QRPDMG+AVNVL PLV K +      + S
Sbjct: 829 VAELAGHCTAREPQQRPDMGHAVNVLGPLVEKWKPSCQEEEES 871

Query: 284 343
           
Sbjct: 889 871

Query: 344 353
           
Sbjct: 949 871

BLAST of WMU40073 vs. TAIR10
Match: AT1G66150.1 (AT1G66150.1 transmembrane kinase 1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = -1

Query: 263 IAELAGHCTAREPTQRPDMGYAVNVLAPLV 322
           +AELAGHC AREP QRPDMG+AVN+L+ LV
Sbjct: 840 VAELAGHCCAREPYQRPDMGHAVNILSSLV 869

Query: 323 353
           
Sbjct: 900 869


HSP 2 Score: 39.7 bits (91), Expect = 1.8e-03
Identity = 29/85 (34.12%), Postives = 39/85 (45.88%), Query Frame = -2

Query: 61  PNDLIWGML*MSLLHSYEKWKAN**RHRGVLWN*L*PTP*PKW*RGWQESEGSDFSYV-D 120
           P D+    L MSL  + +KW+A                       G  + E S  S +  
Sbjct: 879 PEDIYGIDLDMSLPQALKKWQAY---------------------EGRSDLESSTSSLLPS 938

Query: 121 LQDSKGSIPSRPTGFADSFTSIDGR 180
           L +++ SIP+RP GFA+SFTS+DGR
Sbjct: 939 LDNTQMSIPTRPYGFAESFTSVDGR 942

Query: 181 240
           
Sbjct: 999 942

Query: 241 300
           
Sbjct: 1059 942

Query: 301 313
           
Sbjct: 1119 942

BLAST of WMU40073 vs. Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-09
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = -1

Query: 224 IAELAGHCTAREPTQRPDMGYAVNVLAPLVRKMESQLMTTQRS 283
           +AELAGHCTAREP QRPDMG+AVNVL PLV K +      + S
Sbjct: 829 VAELAGHCTAREPQQRPDMGHAVNVLGPLVEKWKPSCQEEEES 871

Query: 284 343
           
Sbjct: 889 871

Query: 344 353
           
Sbjct: 949 871

BLAST of WMU40073 vs. Swiss-Prot
Match: TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = -1

Query: 263 IAELAGHCTAREPTQRPDMGYAVNVLAPLV 322
           +AELAGHC AREP QRPDMG+AVN+L+ LV
Sbjct: 840 VAELAGHCCAREPYQRPDMGHAVNILSSLV 869

Query: 323 353
           
Sbjct: 900 869


HSP 2 Score: 39.7 bits (91), Expect = 3.2e-02
Identity = 29/85 (34.12%), Postives = 39/85 (45.88%), Query Frame = -2

Query: 61  PNDLIWGML*MSLLHSYEKWKAN**RHRGVLWN*L*PTP*PKW*RGWQESEGSDFSYV-D 120
           P D+    L MSL  + +KW+A                       G  + E S  S +  
Sbjct: 879 PEDIYGIDLDMSLPQALKKWQAY---------------------EGRSDLESSTSSLLPS 938

Query: 121 LQDSKGSIPSRPTGFADSFTSIDGR 180
           L +++ SIP+RP GFA+SFTS+DGR
Sbjct: 939 LDNTQMSIPTRPYGFAESFTSVDGR 942

Query: 181 240
           
Sbjct: 999 942

Query: 241 300
           
Sbjct: 1059 942

Query: 301 313
           
Sbjct: 1119 942

BLAST of WMU40073 vs. NCBI nr
Match: gi|449437466|ref|XP_004136513.1| (PREDICTED: probable receptor protein kinase TMK1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = -2

Query: 61  RGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSIDGR 120
           +GWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTS+DGR
Sbjct: 907 KGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSVDGR 946

Query: 121 180
           
Sbjct: 967 946

BLAST of WMU40073 vs. NCBI nr
Match: gi|659084491|ref|XP_008442915.1| (PREDICTED: probable receptor protein kinase TMK1 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = -2

Query: 61  RGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSIDGR 120
           +GWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTS+DGR
Sbjct: 907 KGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSVDGR 946

Query: 121 180
           
Sbjct: 967 946

BLAST of WMU40073 vs. NCBI nr
Match: gi|1009161356|ref|XP_015898852.1| (PREDICTED: receptor protein kinase TMK1-like [Ziziphus jujuba])

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = -2

Query: 61  RGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSIDGR 120
           +GWQE+EG DFSY+DLQDSKGSIP+RPTGFA+SFTS+DGR
Sbjct: 920 KGWQETEGKDFSYMDLQDSKGSIPARPTGFAESFTSVDGR 959

Query: 121 180
           
Sbjct: 980 959

BLAST of WMU40073 vs. NCBI nr
Match: gi|970002870|ref|XP_015062196.1| (PREDICTED: receptor-like kinase TMK3 [Solanum pennellii])

HSP 1 Score: 79.0 bits (193), Expect = 7.7e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = -2

Query: 61  RGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSIDGR 120
           +GWQESEG D SYVDL+DSKGSIP+RPTGFADSFTS DGR
Sbjct: 924 KGWQESEGKDLSYVDLEDSKGSIPARPTGFADSFTSADGR 963

Query: 121 180
           
Sbjct: 984 963

BLAST of WMU40073 vs. NCBI nr
Match: gi|297740205|emb|CBI30387.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 7.7e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = -2

Query: 61  RGWQESEGSDFSYVDLQDSKGSIPSRPTGFADSFTSIDGR 120
           +GWQE+EG DFSY+DL+DSKGSIP+RPTGFADSFTS DGR
Sbjct: 684 KGWQEAEGKDFSYLDLEDSKGSIPARPTGFADSFTSADGR 723

Query: 121 180
           
Sbjct: 744 723

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G23750.14.5e-1065.12 Leucine-rich repeat protein kinase family protein[more]
AT1G66150.11.6e-0776.67 transmembrane kinase 1[more]
Match NameE-valueIdentityDescription
TMK4_ARATH8.0e-0965.12Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1[more]
TMK1_ARATH2.8e-0676.67Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
gi|449437466|ref|XP_004136513.1|3.7e-1495.00PREDICTED: probable receptor protein kinase TMK1 [Cucumis sativus][more]
gi|659084491|ref|XP_008442915.1|3.7e-1495.00PREDICTED: probable receptor protein kinase TMK1 [Cucumis melo][more]
gi|1009161356|ref|XP_015898852.1|3.5e-1282.50PREDICTED: receptor protein kinase TMK1-like [Ziziphus jujuba][more]
gi|970002870|ref|XP_015062196.1|7.7e-1285.00PREDICTED: receptor-like kinase TMK3 [Solanum pennellii][more]
gi|297740205|emb|CBI30387.3|7.7e-1282.50unnamed protein product [Vitis vinifera][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla017630Cla017630gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0046365S1_0046365EST
S4_0048468S4_0048468EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 2..86
score: 2.6
NoneNo IPR availablePANTHERPTHR27001:SF109SUBFAMILY NOT NAMEDcoord: 2..86
score: 2.6