WMU40069 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40069
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr4 : 16790588 .. 16792268 (+)
Sequence length	410

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTAGATGGTACCAGCTTTTAACACAAGGAGCAGAATAGTATCTGAAGATCCATCATGGCCGTAGTTTGAATTCTTGCAACTGTTTGAAGTTCATCCATGGCTTTACCCAGACTTTGGCTTCATAGACCTTCTTCTTACCACCATTAATGGCTTCCAATTTTAAGATGATACAATTTACCAGCAACTACCTGTTCTTTAGCAAAGACAATTCTCTTTCTTGTTGCGTTCTTGAGCTGCAAAAACGAGCGAGAGAGTCGATTTCAACGCTGTTCTGAGCGCCAATGTAATCGCAAACGCCTCCTAGTTTCATCCTGATAAATGGGTCTTCAACGGAAACCCCAAATCGAACACAGCAAGAAGAAGCAGCAGCAACACCATGCGATTCACTTTCATGTCGGTTTTGGAATCC

Library


Library category	ESTs
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU40069 vs. TAIR10
Match: AT2G40880.1 (AT2G40880.1 cystatin A)

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-14
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = -1


Query: 66  MKLGGVCDYIGAQNSVEIDSLARFC-SSRTQQEREL----SLLKNR*LLVNCII--LKLE 125
           M LGGV D  G QNS EI+SLARF      +Q+ ++     ++K R  +V   +  L LE
Sbjct: 33  MMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLE 92

Query: 126 AINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           A  G + K +EAKVWVKPWMNFKQLQEFK
Sbjct: 93  AKEGDQTKNFEAKVWVKPWMNFKQLQEFK 121

Query: 186  245
           
Sbjct: 153  121

Query: 246  305
           
Sbjct: 213  121

Query: 306  312
           
Sbjct: 273  121

[Close]

BLAST of WMU40069 vs. TAIR10
Match: AT3G12490.2 (AT3G12490.2 cystatin B)

HSP 1 Score: 70.9 bits (172), Expect = 7.0e-13
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = -1


Query: 66  LGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLL--------KNR*LLVNCIILKLEA 125
           +GGV D    QNS E++SLARF       ++E +LL        K + +      L LE 
Sbjct: 37  VGGVGDVPANQNSGEVESLARFAVDE-HNKKENALLEFARVVKAKEQVVAGTLHHLTLEI 96

Query: 126 INGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           +  G+KK+YEAKVWVKPW+NFK+LQEFK
Sbjct: 97  LEAGQKKLYEAKVWVKPWLNFKELQEFK 123

Query: 186  245
           
Sbjct: 157  123

Query: 246  305
           
Sbjct: 217  123

[Close]

BLAST of WMU40069 vs. TAIR10
Match: AT5G05110.1 (AT5G05110.1 Cystatin/monellin family protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = -1


Query: 66  DPFIRMKLGGVCDYIGAQNS-VEIDSLARFCSSRTQQERELSLLKNR*LLVNCII----- 125
           D  ++MKLGG  D     N   EID +A F      +     L   R L     +     
Sbjct: 38  DNVVKMKLGGFSDSKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKL 97

Query: 126 --LKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
             L LE I  G+KK+YEAKVWVKPWMNFKQLQEFK
Sbjct: 98  YRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFK 132

Query: 186  245
           
Sbjct: 158  132

Query: 246  305
           
Sbjct: 218  132

Query: 306  327
           
Sbjct: 278  132

[Close]

BLAST of WMU40069 vs. TAIR10
Match: AT5G12140.1 (AT5G12140.1 cystatin-1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 31/86 (36.05%), Postives = 40/86 (46.51%), Query Frame = -1


Query: 69  LGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLLKNR*LLVNCII-------LKLEAI 128
           +GGV D     N ++++SLARF      +   L+L   R L     +       L +E  
Sbjct: 10  VGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVA 69

Query: 129 NGGKKKVYEAKVWVKPWMNFKQLQEF 188
           +G   KVYEAKV  K W N KQL+ F
Sbjct: 70  DGETNKVYEAKVLEKAWENLKQLESF 95

Query: 189  248
           
Sbjct: 130  95

Query: 249  306
           
Sbjct: 190  95

[Close]

BLAST of WMU40069 vs. Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-13
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = -1


Query: 66  LGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLLKNR*LLVNCIILK-------LEAI 125
           LGG  D  G QNS+EIDSLARF      +++   L   R +     ++        LEA 
Sbjct: 4   LGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAK 63

Query: 126 NGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           +GG+KKVYEAKVW KPW+NFK+LQEFK
Sbjct: 64  DGGQKKVYEAKVWEKPWLNFKELQEFK 90

Query: 186  245
           
Sbjct: 124  90

Query: 246  305
           
Sbjct: 184  90

[Close]

BLAST of WMU40069 vs. Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = -1


Query: 66  MKLGGVCDYIGAQNSVEIDSLARFC-SSRTQQEREL----SLLKNR*LLVNCII--LKLE 125
           M LGGV D  G QNS EI+SLARF      +Q+ ++     ++K R  +V   +  L LE
Sbjct: 33  MMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLE 92

Query: 126 AINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           A  G + K +EAKVWVKPWMNFKQLQEFK
Sbjct: 93  AKEGDQTKNFEAKVWVKPWMNFKQLQEFK 121

Query: 186  245
           
Sbjct: 153  121

Query: 246  305
           
Sbjct: 213  121

Query: 306  312
           
Sbjct: 273  121

[Close]

BLAST of WMU40069 vs. Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = -1


Query: 66  LGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLL--------KNR*LLVNCIILKLEA 125
           LGG  D   A NSVE D+LARF       +RE +LL        K + +      L LEA
Sbjct: 48  LGGAHDAPSAANSVETDALARFAVDE-HNKRENALLEFVRVVEAKEQVVAGTLHHLTLEA 107

Query: 126 INGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           +  G+KKVYEAKVWVKPW++FK+LQEF+
Sbjct: 108 LEAGRKKVYEAKVWVKPWLDFKELQEFR 134

Query: 186  245
           
Sbjct: 168  134

Query: 246  305
           
Sbjct: 228  134

[Close]

BLAST of WMU40069 vs. Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = -1


Query: 66  LGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLL--------KNR*LLVNCIILKLEA 125
           +GGV D    QNS E++SLARF       ++E +LL        K + +      L LE 
Sbjct: 37  VGGVGDVPANQNSGEVESLARFAVDE-HNKKENALLEFARVVKAKEQVVAGTLHHLTLEI 96

Query: 126 INGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           +  G+KK+YEAKVWVKPW+NFK+LQEFK
Sbjct: 97  LEAGQKKLYEAKVWVKPWLNFKELQEFK 123

Query: 186  245
           
Sbjct: 157  123

Query: 246  305
           
Sbjct: 217  123

[Close]

BLAST of WMU40069 vs. Swiss-Prot
Match: CYT7_ARATH (Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-11
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = -1


Query: 66  DPFIRMKLGGVCDYIGAQNS-VEIDSLARFCSSRTQQERELSLLKNR*LLVNCII----- 125
           D  ++MKLGG  D     N   EID +A F      +     L   R L     +     
Sbjct: 38  DNVVKMKLGGFSDSKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKL 97

Query: 126 --LKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
             L LE I  G+KK+YEAKVWVKPWMNFKQLQEFK
Sbjct: 98  YRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFK 132

Query: 186  245
           
Sbjct: 158  132

Query: 246  305
           
Sbjct: 218  132

Query: 306  327
           
Sbjct: 278  132

[Close]

BLAST of WMU40069 vs. NCBI nr
Match: gi|659111458|ref|XP_008455746.1| (PREDICTED: cysteine proteinase inhibitor A [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = -1


Query: 63  GVSVEDPFIRMKLGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLL--------KNR* 122
           G S+EDPFIRMKLGGV DYIG+QN VEI+SLARF + +    +E  LL        K + 
Sbjct: 21  GFSIEDPFIRMKLGGVRDYIGSQNRVEIESLARF-AVQEHNNKENGLLEFDRVLKAKEQV 80

Query: 123 LLVNCIILKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFKL 182
           +      L LEAI+GGKKKVYEAKVWVKPWMNFKQLQEFKL
Sbjct: 81  VAGKLYHLTLEAIDGGKKKVYEAKVWVKPWMNFKQLQEFKL 120

Query: 183  242
           
Sbjct: 141  120

Query: 243  302
           
Sbjct: 201  120

Query: 303  342
           
Sbjct: 261  120

[Close]

BLAST of WMU40069 vs. NCBI nr
Match: gi|743896193|ref|XP_011041371.1| (PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica])

HSP 1 Score: 95.1 bits (235), Expect = 9.9e-17
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = -1


Query: 66  CCVRFGVSVEDPFIRMKLGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSL-------L 125
           C    G+  +D F++MKLGGV D  G+QNS EIDSLARF      ++    L        
Sbjct: 19  CYTELGLCRQDNFLKMKLGGVHDCKGSQNSAEIDSLARFAVQEHNKKENAILEFVRVLKA 78

Query: 126 KNR*LLVNCIILKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           K + +      L LEAI+ G  K+YE KVWVKPWMNFKQLQEFK
Sbjct: 79  KEQVVAGKLYHLTLEAIDAGNNKMYEVKVWVKPWMNFKQLQEFK 122

Query: 186  245
           
Sbjct: 139  122

Query: 246  305
           
Sbjct: 199  122

Query: 306  357
           
Sbjct: 259  122

[Close]

BLAST of WMU40069 vs. NCBI nr
Match: gi|116734397|gb|ABK20187.1| (cysteine protease inhibitor [Populus tomentosa])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = -1


Query: 66  CCVRFGVSVEDPFIRMKLGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSL-------L 125
           C    G+  +D F++MKLGGV D  G+QNS EIDSLARF      ++    L        
Sbjct: 19  CYTELGLCRQDNFLKMKLGGVHDCRGSQNSAEIDSLARFAVQEHNKKENAILEFVRVLKA 78

Query: 126 KNR*LLVNCIILKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           K + +      L LEA + G  K+YE KVWVKPWMNFKQLQEFK
Sbjct: 79  KEQVVAGKLYHLTLEATDAGNNKMYEVKVWVKPWMNFKQLQEFK 122

Query: 186  245
           
Sbjct: 139  122

Query: 246  305
           
Sbjct: 199  122

Query: 306  357
           
Sbjct: 259  122

[Close]

BLAST of WMU40069 vs. NCBI nr
Match: gi|116734393|gb|ABK20185.1| (cysteine protease inhibitor [Populus tomentosa])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = -1


Query: 66  CCVRFGVSVEDPFIRMKLGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSL-------L 125
           C    G+  +D F++MKLGGV D  G+QNS EIDSLARF      ++    L        
Sbjct: 19  CYTELGLCRQDNFLKMKLGGVHDCKGSQNSAEIDSLARFAVQEHNKKENAILKFVRVLKA 78

Query: 126 KNR*LLVNCIILKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
           K + +      L LEA + G  K+YE KVWVKPWMNFKQLQEFK
Sbjct: 79  KEQVVAGKLYHLTLEATDAGNNKMYEVKVWVKPWMNFKQLQEFK 122

Query: 186  245
           
Sbjct: 139  122

Query: 246  305
           
Sbjct: 199  122

Query: 306  357
           
Sbjct: 259  122

[Close]

BLAST of WMU40069 vs. NCBI nr
Match: gi|567875809|ref|XP_006430494.1| (hypothetical protein CICLE_v10012693mg [Citrus clementina])

HSP 1 Score: 92.0 bits (227), Expect = 8.4e-16
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = -1


Query: 66  VRFGVSVEDPFIRMKLGGVCDYIGAQNSVEIDSLARFCSSRTQQERELSLL--------K 125
           +  G+  E  FI+M+ GGV DY G QNS EI+ LARF + +   ++E +LL        K
Sbjct: 17  IELGLCREGNFIQMRPGGVYDYGGNQNSAEIEGLARF-AVQEHNKKENALLQFARVLKAK 76

Query: 126 NR*LLVNCIILKLEAINGGKKKVYEAKVWVKPWMNFKQLQEFK 185
            + +      L LE I+ GKKK+YEAK+WVKPW+NFKQLQEFK
Sbjct: 77  EQVVAGKLYYLTLEVIDAGKKKIYEAKIWVKPWINFKQLQEFK 118

Query: 186  245
           
Sbjct: 137  118

Query: 246  305
           
Sbjct: 197  118

Query: 306  351
           
Sbjct: 257  118

The following BLAST results are available for this feature:

BLAST of WMU40069 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40880.1	8.3e-14	51.69	cystatin A	[more]
AT3G12490.2	7.0e-13	46.59	cystatin B	[more]
AT5G05110.1	1.6e-12	45.26	Cystatin/monellin family protein	[more]
AT5G12140.1	2.2e-06	36.05	cystatin-1	[more]

BLAST of WMU40069 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYTI_VIGUN	2.3e-13	49.43	Cysteine proteinase inhibitor OS=Vigna unguiculata PE=1 SV=1	[more]
CYT3_ARATH	1.5e-12	51.69	Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2	[more]
CYT12_ORYSJ	2.5e-12	48.86	Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100...	[more]
CYT6_ARATH	1.2e-11	46.59	Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2	[more]
CYT7_ARATH	2.8e-11	45.26	Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2	[more]

BLAST of WMU40069 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111458\|ref\|XP_008455746.1\|	3.2e-23	63.37	PREDICTED: cysteine proteinase inhibitor A [Cucumis melo]	[more]
gi\|743896193\|ref\|XP_011041371.1\|	9.9e-17	49.04	PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]	[more]
gi\|116734397\|gb\|ABK20187.1\|	3.8e-16	48.08	cysteine protease inhibitor [Populus tomentosa]	[more]
gi\|116734393\|gb\|ABK20185.1\|	3.8e-16	48.08	cysteine protease inhibitor [Populus tomentosa]	[more]
gi\|567875809\|ref\|XP_006430494.1\|	8.4e-16	48.54	hypothetical protein CICLE_v10012693mg [Citrus clementina]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla012086	Cla012086	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S4_0047031	S4_0047031	EST
S4_0060847	S4_0060847	EST