WMU39424 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU39424
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Riboflavin biosynthesis protein RibD
Location	Chr6 : 4144214 .. 4144787 (-)
Sequence length	576

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTAACAGACAAAGAAGTGGTGGTAGGCAAGGAAGGGATTGAAACGGTAGTTATGGATGAATTAAAATTTGGGCAACATTCTAGATTACTGCCAGAGCCAAGGACTAAACAGTGTCCTGTGGGATGTGAGAGCAAAAGTTGGGAATTCACGAACAACTTATGAAAAGAGGGTATTGAGCAGAAATATTTGCAAAAAGTAGTTGTGGAAGTGTTGCCACAATGGAGTGAGAGCCAGAGTGGGAACTCTCAAACTTTGTTCAAGAGTATGGCTGAAAATCTGAAGATGAAGAGTTTGCAGCCCAGGATGTCTGGGCAGAGTGTTCTATTGGAAGGCAATCTCTAGCATTGGAAATTGAACACTTCACAGGTTTTTAAAATCAAGAGAATGAAGGTAATGCCTTTTACCACTTTTTTATAATTCACTGATTATTGGGCAAATTTTGGCTAACTGGCAAGCTGGTTGAGGCATTGTTTCTCCGTTCGAATCTCTTGTTCCTATATTTGTGATGTAATAATAATAATAATAATTACAAAAAGTGGGGTAACTAATTTTTCTAATTTACTTTTAAGTTTTTCT

Library


Library category	ESTs
watermelon fruit 10d library	5
watermelon fruit 18d library	2
watermelon fruit 26d library	12

Homology

[Close]

BLAST of WMU39424 vs. TAIR10
Match: AT4G20960.1 (AT4G20960.1 Cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 163 KEGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEG 222
           ++G EQK LQKV++EVLP+WS       Q       E+  +K LQ +  G SVLLEG
Sbjct: 370 RDGFEQKLLQKVIIEVLPEWSTKD--ERQIASMKWLESKHVKDLQSKQLGGSVLLEG 424

Query: 223  282
           
Sbjct: 430  424

Query: 283  334
           
Sbjct: 490  424

HSP 2 Score: 34.3 bits (77), Expect = 1.0e-01
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 2


Query: 65  NLGNILDYCQSQGLNSVLWDVRAKVGN----SRTTYEKRVLSRNI 124
           NL +ILDYC ++GL SVL D+R  V +     R  +E+++L + I
Sbjct: 338 NLDSILDYCYNRGLCSVLLDLRGNVKDLEVLLRDGFEQKLLQKVI 382

Query: 125  184
           
Sbjct: 398  382

Query: 185  188
           
Sbjct: 458  382

[Close]

BLAST of WMU39424 vs. TrEMBL
Match: A0A0A0KCZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003430 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 4   TDKEVVVGKEGIETVVMDELKFGQHSRLLPEPRTKQCPVGCESKSWEFT------NNL*K 63
           T+KEVVV +  IETVV+D+L     + +L   +++    G  S  W+          L K
Sbjct: 318 TNKEVVVSEREIETVVLDQLNM---NNILNYCQSQ----GLNSVMWDVRAKLGVHEELIK 377

Query: 64  EGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 123
           EGIE+K LQKVVVEVLPQWSESQ   S+T FKSMAENLK+K L+PRM G SV+LE NL
Sbjct: 378 EGIEEKLLQKVVVEVLPQWSESQ---SETWFKSMAENLKLKCLEPRMCGPSVVLEANL 425

Query: 124  183
           
Sbjct: 438  425

Query: 184  243
           
Sbjct: 498  425

Query: 244  303
           
Sbjct: 558  425

Query: 304  340
           
Sbjct: 618  425

[Close]

BLAST of WMU39424 vs. TrEMBL
Match: V4U2N1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020258mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 163 KEGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 222
           KEGIEQ  LQK+VVEVLP W+ S  GN  TL  S+ + L +K+LQP+MS QS++LEG L
Sbjct: 369 KEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427

Query: 223  282
           
Sbjct: 429  427

Query: 283  340
           
Sbjct: 489  427

[Close]

BLAST of WMU39424 vs. TrEMBL
Match: V4U2N1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020258mg PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 1.7e+03
Identity = 17/44 (38.64%), Postives = 24/44 (54.55%), Query Frame = 2


Query: 65  NLGNILDYCQSQGLNSVLWDVRAKVGNSRTTYEKRVLSRNICKK 124
           NL  +LDYC S G  SVL D+R   G+      K  + +N+ +K
Sbjct: 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLL-KEGIEQNLLQK 379

Query: 125  184
           
Sbjct: 397  379

Query: 185  197
           
Sbjct: 457  379

HSP 2 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 163 KEGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 222
           KEGIEQ  LQK+VVEVLP W+ S  GN  TL  S+ + L +K+LQP+MS QS++LEG L
Sbjct: 369 KEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427

Query: 223  282
           
Sbjct: 429  427

Query: 283  340
           
Sbjct: 489  427

[Close]

BLAST of WMU39424 vs. TrEMBL
Match: A0A067H5E0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014311mg PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 1.7e+03
Identity = 17/44 (38.64%), Postives = 24/44 (54.55%), Query Frame = 2


Query: 65  NLGNILDYCQSQGLNSVLWDVRAKVGNSRTTYEKRVLSRNICKK 124
           NL  +LDYC S G  SVL D+R   G+      K  + +N+ +K
Sbjct: 337 NLKAVLDYCYSHGFCSVLVDLRGNYGDLEMLL-KEGIEQNLLQK 379

Query: 125  184
           
Sbjct: 397  379

Query: 185  197
           
Sbjct: 457  379

HSP 2 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1


Query: 4   TDKEVV----VGKEGIETVVMDELKFGQHSRLLPEPRTKQ-CPVGCESK-SWEFTNNL*K 63
           TDKE        K+GIETVV+D++     + +L   +++  C V  + + S+     L K
Sbjct: 316 TDKEASEEPETSKKGIETVVLDKINL---NAILEYCKSRGLCSVLMDLRGSFVELEELLK 375

Query: 64  EGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSG-QSVLLEGNL 123
           +G EQ  LQK+VVEVLP W ES   +S T  KS+   LK+ +LQP++SG QS++LEG L
Sbjct: 376 DGTEQNLLQKIVVEVLPFWDESSGLSSLTASKSIRRRLKVNNLQPKISGDQSIVLEGYL 431

Query: 124  183
           
Sbjct: 436  431

Query: 184  243
           
Sbjct: 496  431

Query: 244  303
           
Sbjct: 556  431

Query: 304  340
           
Sbjct: 616  431

[Close]

BLAST of WMU39424 vs. TrEMBL
Match: W9R4Z5_9ROSA (Riboflavin biosynthesis protein RibD OS=Morus notabilis GN=L484_003715 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 13  EVVVGKEGIETVVMDELKFGQHSRLLPEPRTKQCPVGCESK-SWEFTNNL*KEGIEQKYL 72
           E  + ++GIETVV+D++     + L    R   C V  + + S +    L +EGIE+  L
Sbjct: 290 EPKLSEKGIETVVLDQISLD--AILEYSKRQGFCSVLLDLRGSIDDIKELLQEGIEKNLL 349

Query: 73  QKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEG 132
           QK+VVEV+P W E  S NS    KS+ + + +K+L+P++SGQSVLLEG
Sbjct: 350 QKIVVEVVPMWVEGDSKNSFFGLKSLDKVIDIKNLKPKVSGQSVLLEG 395

Query: 133  192
           
Sbjct: 410  395

Query: 193  252
           
Sbjct: 470  395

Query: 253  312
           
Sbjct: 530  395

Query: 313  334
           
Sbjct: 590  395

[Close]

BLAST of WMU39424 vs. NCBI nr
Match: gi|659116788|ref|XP_008458260.1| (PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-20
Identity = 66/119 (55.46%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   LTDKEVVVGKEGIETVVMDELKFGQHSRLLPEPRTKQCPVGCESKSWEFT------NNL* 60
           LT+KE VV + GIETVV+D+L     + +L   +++    G  S  W+          L 
Sbjct: 317 LTNKEEVVSERGIETVVLDQLNM---NNILNYCQSQ----GLNSVMWDVRAKLGVHEELI 376

Query: 61  KEGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 120
           KEGIE+K LQKVVVEVLPQWSESQS   +T FKSMAENLK+K L+PRM GQSV+LEGNL
Sbjct: 377 KEGIEEKLLQKVVVEVLPQWSESQS---ETWFKSMAENLKLKGLEPRMCGQSVVLEGNL 425

Query: 121  180
           
Sbjct: 437  425

Query: 181  240
           
Sbjct: 497  425

Query: 241  300
           
Sbjct: 557  425

Query: 301  340
           
Sbjct: 617  425

[Close]

BLAST of WMU39424 vs. NCBI nr
Match: gi|449441472|ref|XP_004138506.1| (PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 4   TDKEVVVGKEGIETVVMDELKFGQHSRLLPEPRTKQCPVGCESKSWEFT------NNL*K 63
           T+KEVVV +  IETVV+D+L     + +L   +++    G  S  W+          L K
Sbjct: 318 TNKEVVVSEREIETVVLDQLNM---NNILNYCQSQ----GLNSVMWDVRAKLGVHEELIK 377

Query: 64  EGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 123
           EGIE+K LQKVVVEVLPQWSESQ   S+T FKSMAENLK+K L+PRM G SV+LE NL
Sbjct: 378 EGIEEKLLQKVVVEVLPQWSESQ---SETWFKSMAENLKLKCLEPRMCGPSVVLEANL 425

Query: 124  183
           
Sbjct: 438  425

Query: 184  243
           
Sbjct: 498  425

Query: 244  303
           
Sbjct: 558  425

Query: 304  340
           
Sbjct: 618  425

[Close]

BLAST of WMU39424 vs. NCBI nr
Match: gi|1009138400|ref|XP_015886568.1| (PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-10
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 4   TDKEVV----VGKEGIETVVMDELKFGQHSRLLPEPRTKQCPVGCESKSW-EFTNNL*KE 63
           TDKE+V    + ++GIE VV+ EL    ++ L    R   C V  ES+   E      +E
Sbjct: 314 TDKEMVEDPKMAQKGIERVVLGELNL--NAILEYCSRQGFCSVLIESRGKVEAIKEFLQE 373

Query: 64  GIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEG 123
           GIE+  LQKVVVEVLP W E  +GN     K +   L+MK LQ ++SG+SV++EG
Sbjct: 374 GIERNLLQKVVVEVLPLWVEIDNGNLPVALKGLRRRLEMKKLQTKISGKSVVVEG 426

Query: 124  183
           
Sbjct: 434  426

Query: 184  243
           
Sbjct: 494  426

Query: 244  303
           
Sbjct: 554  426

Query: 304  334
           
Sbjct: 614  426

[Close]

BLAST of WMU39424 vs. NCBI nr
Match: gi|567905144|ref|XP_006445060.1| (hypothetical protein CICLE_v10020258mg [Citrus clementina])

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 163 KEGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSGQSVLLEGNL 222
           KEGIEQ  LQK+VVEVLP W+ S  GN  TL  S+ + L +K+LQP+MS QS++LEG L
Sbjct: 369 KEGIEQNLLQKIVVEVLPVWNGSDGGNPHTLLNSLGKRLILKNLQPKMSSQSIVLEGYL 427

Query: 223  282
           
Sbjct: 429  427

Query: 283  340
           
Sbjct: 489  427

[Close]

BLAST of WMU39424 vs. NCBI nr
Match: gi|743828777|ref|XP_011023353.1| (PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Populus euphratica])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1


Query: 4   TDKEVV----VGKEGIETVVMDELKFGQHSRLLPEPRTKQ-CPVGCESK-SWEFTNNL*K 63
           TDKE        K+GIETVV+D++     + +L   +++  C V  + + S+     L K
Sbjct: 331 TDKEASEEPETSKKGIETVVLDKINL---NAILEYCKSRGLCSVLMDLRGSFVELEELLK 390

Query: 64  EGIEQKYLQKVVVEVLPQWSESQSGNSQTLFKSMAENLKMKSLQPRMSG-QSVLLEGNL 123
           +G EQ  LQK+VVEVLP W ES   +S T  KS+   LK+ +LQP++SG QS++LEG L
Sbjct: 391 DGTEQNLLQKIVVEVLPFWDESSGLSSLTASKSIRRRLKVNNLQPKISGDQSIVLEGYL 446

Query: 124  183
           
Sbjct: 451  446

Query: 184  243
           
Sbjct: 511  446

Query: 244  303
           
Sbjct: 571  446

Query: 304  340
           
Sbjct: 631  446

The following BLAST results are available for this feature:

BLAST of WMU39424 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20960.1	3.1e-06	45.61	Cytidine/deoxycytidylate deaminase family protein	[more]

BLAST of WMU39424 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCZ2_CUCSA	3.0e-18	53.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003430 PE=4 SV=1	[more]
V4U2N1_9ROSI	3.0e-10	59.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020258mg PE=4 SV=1	[more]
V4U2N1_9ROSI	1.7e+03	38.64	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020258mg PE=4 SV=1	[more]
A0A067H5E0_CITSI	1.7e+03	38.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014311mg PE=4 SV=1	[more]
W9R4Z5_9ROSA	2.0e-09	41.67	Riboflavin biosynthesis protein RibD OS=Morus notabilis GN=L484_003715 PE=4 SV=1	[more]

BLAST of WMU39424 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116788\|ref\|XP_008458260.1\|	2.7e-20	55.46	PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Cucumis melo]	[more]
gi\|449441472\|ref\|XP_004138506.1\|	4.3e-18	53.39	PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Cucumis sativus]	[more]
gi\|1009138400\|ref\|XP_015886568.1\|	7.4e-10	42.61	PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Ziziphus jujuba]	[more]
gi\|567905144\|ref\|XP_006445060.1\|	9.7e-10	59.32	hypothetical protein CICLE_v10020258mg [Citrus clementina]	[more]
gi\|743828777\|ref\|XP_011023353.1\|	1.7e-09	42.02	PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Populus euphrati...	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla001222	Cla001222	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0012135	S1_0012135	EST
S1_0038564	S1_0038564	EST
S1_0116359	S1_0116359	EST
S1_0140790	S1_0140790	EST
S1_0150504	S1_0150504	EST
S2_0051616	S2_0051616	EST
S2_0123956	S2_0123956	EST
S3_0098891	S3_0098891	EST
S3_0109288	S3_0109288	EST
S3_0120298	S3_0120298	EST
S3_0120539	S3_0120539	EST
S3_0129729	S3_0129729	EST
S3_0139063	S3_0139063	EST
S3_0141459	S3_0141459	EST
S3_0167264	S3_0167264	EST
S3_0167690	S3_0167690	EST
S3_0169651	S3_0169651	EST
S3_0170148	S3_0170148	EST
S3_0183684	S3_0183684	EST