WMU37380 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU37380
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 154380 .. 155379 (+)
Sequence length1008
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GCTAAGTTGGCCATCAGCCGTGCCATTTCAATTTAGGCGTCTGCTGGTTGGCAAATTCTTTTTTTCAAATTTGAAGTCCTTGCATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGACATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAAGGGAAGACGTCCATTAGCGCCCCCAGTTTGTATGGCTTGGTCGGTTCCAATTGTATCTCTGACTTGAGATAGTATCCAACCTAGTGGGGTTTGCCATCATATAGTTTTGGGTTCTGGAAATGGATAAAGTACGGGGAGTGTTCATTCACTTCTTCTGCCCCTGCATAGACACCCTACTGCTTTTTTCTCTAAACTTCTACTCTAGTGGTTCTAGTTAAGGACTTATTACCCGTTTGTTTATTTTTTCTGCATCAGTCTTGTGAATTTTCATGGTCTGGTTGTATTCTGGTCTTTCCTCTGAAATTCACTTCATATTTGTACACCTCGTTTGGTTCAGTTTCATAGCAATACACATCATGAAAGGTCGTCATCGTATATCATATCCTGTATTTGCATTTCATTTGGTCGCGTTTTGTAGTTTCAACATACATGATCAATACGGTGAATTCATGAAAATCATTATAATCCCCTTGGGTCATTTTTGAAGTACAGTCGTCACGTCAGAGTCTGCTTTCTTTTTCCTTTATTTATTTCTTTTACATCCGATATCTTTATTATTTTGCAAAATGACAAAATGTATCGGAAACATCACAAAAGTTGTGATGTTGTTTTTTTGGATTCAGTTGGGTTGGGTGAGACGTCTGTTTAGAAGTTGAGGATTTTGTTGGCTTGTATATATTATTTGTACAAGGAAAGTTTTGATGATTGGAAATTGAGGGTGCCAAACATATATTCGTTGGAC
Homology
[Close]
BLAST of WMU37380 vs. TrEMBL
Match: A0A0A0KLW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 

Query: 187 IIMKALLTIALAASSRDLVCHGRSGRKGRRPLAPPVCMAWSVPIVSLT 246
           +IMKALLTIALAASSRDLVCHGRSGR+  RPLAPPV +AWSVPIVSLT
Sbjct: 37  VIMKALLTIALAASSRDLVCHGRSGRR-ERPLAPPVRLAWSVPIVSLT 83

Query: 247  306
           
Sbjct: 97   83

Query: 307  331
           
Sbjct: 157  83

[Close]
BLAST of WMU37380 vs. TrEMBL
Match: A0A0A0KLW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 

Query: 84  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNS 143
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNS
Sbjct: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNS 33

Query: 144  183
           
Sbjct: 61   33

[Close]
BLAST of WMU37380 vs. NCBI nr
Match: gi|700194677|gb|KGN49854.1| (hypothetical protein Csa_5G139320 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 

Query: 187 IIMKALLTIALAASSRDLVCHGRSGRKGRRPLAPPVCMAWSVPIVSLT 246
           +IMKALLTIALAASSRDLVCHGRSGR+  RPLAPPV +AWSVPIVSLT
Sbjct: 37  VIMKALLTIALAASSRDLVCHGRSGRR-ERPLAPPVRLAWSVPIVSLT 83

Query: 247  306
           
Sbjct: 97   83

Query: 307  331
           
Sbjct: 157  83

The following BLAST results are available for this feature:
BLAST of WMU37380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW1_CUCSA1.1e-1287.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1[more]
A0A0A0KLW1_CUCSA1.2e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1[more]
BLAST of WMU37380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194677|gb|KGN49854.1|1.6e-1287.50hypothetical protein Csa_5G139320 [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla004888Cla004888gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0003494S1_0003494EST
S1_0019688S1_0019688EST
S1_0050751S1_0050751EST
S1_0051285S1_0051285EST
S1_0071567S1_0071567EST
S1_0081321S1_0081321EST
S1_0085331S1_0085331EST
S1_0117246S1_0117246EST
S1_0120935S1_0120935EST
S1_0123950S1_0123950EST
S1_0133469S1_0133469EST
S3_0077477S3_0077477EST
S3_0086780S3_0086780EST
S3_0090445S3_0090445EST
S3_0127619S3_0127619EST
S3_0170426S3_0170426EST
S4_0045797S4_0045797EST
WMN37B08WMN37B08EST