WMU37260 (transcribed_cluster) Watermelon (97103) v1

NameWMU37260
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPolyamine-modulated factor 1-binding protein 1, putative
LocationChr5 : 2956499 .. 2959836 (-)
Sequence length556
The following sequences are available for this feature:

transcribed_cluster sequence

GCAAGAAGCTTAAAGCTGGAGCTGCTTAAAAGTTCCGTAGTCCGTAAGTAGTCGTTAAGGTTTGCTTGACGAAGAGTTCCGACTGACTTTGATGAAAGAAAGAGCTGAGAAGCTTGAGCATTGGAGAATGATGGAAAAGACGAGAGAAGAAAAGAAAGAAGAAAAGAATGAGCTACTGAGACGGAAGAGTTCAATGTGGGTTGATGAAAATAAACTGGAAGAGAAGCTATTAGAAGCAATTGTTAGTACCACCCCTCTCTGAGTTCTGTTTTCGAGTTTTCTTACTTTTCAGTGATAATTGTCCAACATTGTTCCAATTTCTTATATTTCTTGTTAGAAGCAGTTTTAGATGGTTATCACCGGATTCTTGCTGATAAGTTTCTGCATATCCAATGTTTTTTGTTCACTTCTACACCCATTACTTGTGATCAAGCAGTCAACTTCTTGAATACAGTGGTGCCTTTTTATTATTATTATTACGGAAAAAATTTGTATGTTGTATCAATTAAAACTTCGTGCGAATAATTCTATTAATTTAGAATATGTTATCTTCATT
BLAST of WMU37260 vs. TAIR10
Match: AT5G49210.1 (AT5G49210.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 24/60 (40.00%), Postives = 31/60 (51.67%), Query Frame = 2

Query: 62  LLDEEFRLTLMKERAEKLEHWXXXXXXXXXXXXXXXXXXXXXSSMWVDENKLEEKLLEAI 121
           + DEEFR TL+KERAEKLE W                     SS+W+++ +LE K+ EA+
Sbjct: 130 IADEEFRQTLIKERAEKLEMWKMMGQKREEKIKEREKLLREQSSLWIEQKELERKITEAL 189

Query: 122 181
           
Sbjct: 190 189

Query: 182 241
           
Sbjct: 250 189

BLAST of WMU37260 vs. TrEMBL
Match: A0A0A0L7X4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130330 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.2e-09
Identity = 36/58 (62.07%), Postives = 37/58 (63.79%), Query Frame = 2

Query: 68  DEEFRLTLMKERAEKLEHWXXXXXXXXXXXXXXXXXXXXXSSMWVDENKLEEKLLEAI 127
           DEEFRLTL+KERAEKLEHW                     SSMWVDENKLEEKLLEAI
Sbjct: 130 DEEFRLTLVKERAEKLEHWRMMEKKREEKKKEKKELLRRQSSMWVDENKLEEKLLEAI 187

Query: 128 187
           
Sbjct: 190 187

Query: 188 242
           
Sbjct: 250 187

BLAST of WMU37260 vs. NCBI nr
Match: gi|449432404|ref|XP_004133989.1| (PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 6.0e-09
Identity = 36/58 (62.07%), Postives = 37/58 (63.79%), Query Frame = 2

Query: 68  DEEFRLTLMKERAEKLEHWXXXXXXXXXXXXXXXXXXXXXSSMWVDENKLEEKLLEAI 127
           DEEFRLTL+KERAEKLEHW                     SSMWVDENKLEEKLLEAI
Sbjct: 130 DEEFRLTLVKERAEKLEHWRMMEKKREEKKKEKKELLRRQSSMWVDENKLEEKLLEAI 187

Query: 128 187
           
Sbjct: 190 187

Query: 188 242
           
Sbjct: 250 187

BLAST of WMU37260 vs. NCBI nr
Match: gi|659075824|ref|XP_008438350.1| (PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = 2

Query: 62  LLDEEFRLTLMKERAEKLEHWXXXXXXXXXXXXXXXXXXXXXSSMWVDENKLEEKLLEAI 121
           + DEEFRLTLMKERAEKLEHW          X          SS W+DENKLEEKLLEAI
Sbjct: 128 IADEEFRLTLMKERAEKLEHWRMMEKKREEKXKEKKELLRRQSSTWIDENKLEEKLLEAI 187

Query: 122 181
           
Sbjct: 188 187

Query: 182 241
           
Sbjct: 248 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G49210.12.3e-0640.00 unknown protein[more]
Match NameE-valueIdentityDescription
A0A0A0L7X4_CUCSA7.2e-0962.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449432404|ref|XP_004133989.1|6.0e-0962.07PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus][more]
gi|659075824|ref|XP_008438350.1|7.9e-0960.00PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis m... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021413Cla021413gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0067209S1_0067209EST
S1_0074795S1_0074795EST
S1_0130660S1_0130660EST
S2_0056219S2_0056219EST
S2_0076977S2_0076977EST
S4_0055788S4_0055788EST