WMU37108 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU37108
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein XRI1
Location	Chr7 : 302587 .. 303075 (+)
Sequence length	495

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGATCCATCTCAATCTTACCCCAAACTTTCTAGTCGTTTCTTCTTGGAAAGCCTGTAGTAGGTAAAACCAAGATTCACACCGAAGGCGGAAAGGGAAGCATCACAATCATGAGGACTAGAGGTTGAGCGAACAATGGATAACGGTTCTCGCTATCCAGTCTTTCCTTTTGCACTGCCCGTTGGTCCATCCTTGAGGGATTTGTAAAATGTCATGGCCATCTAAGTAAGTAGTACAGAAGGTGATTAATTTCCATTTTTGGTGGGGATAGATAGAGAGAAAGAGAGAGAAAGAAGAGAGAGTTGTGTAGAAGTATTAGAGTTGCTCTTGGAATCCCTAATCATATAACTTCATCAATATGTTTATGCTTCCAAGTGAACTCTTGTTGGTTGTTCGAGGTCGAGTTCGACACCTATAACATTTATATTGTCATTTTTAGACTTGAAAACACTCCCTTATCATTATGTTTATTATCAAATCATTCCATTTCTTATAC

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1
watermelon fruit 26d library	2

Homology

[Close]

BLAST of WMU37108 vs. TAIR10
Match: AT5G48720.2 (AT5G48720.2 x-ray induced transcript 1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 25/26 (96.15%), Postives = 23/26 (88.46%), Query Frame = 2


Query: 47  GKPVVGKTKIHTEGGKGSITIMRTRG 106
           GKPVVGKTKI TEGGKGSITIMRTRG
Sbjct: 275 GKPVVGKTKIRTEGGKGSITIMRTRG 300

Query: 107  125
           
Sbjct: 335  300

[Close]

BLAST of WMU37108 vs. Swiss-Prot
Match: XRI1_ARATH (Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/26 (96.15%), Postives = 23/26 (88.46%), Query Frame = 2


Query: 47  GKPVVGKTKIHTEGGKGSITIMRTRG 106
           GKPVVGKTKI TEGGKGSITIMRTRG
Sbjct: 275 GKPVVGKTKIRTEGGKGSITIMRTRG 300

Query: 107  125
           
Sbjct: 335  300

The following BLAST results are available for this feature:

BLAST of WMU37108 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48720.2	1.4e-07	96.15	x-ray induced transcript 1	[more]

BLAST of WMU37108 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRI1_ARATH	2.5e-06	96.15	Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2	[more]

BLAST of WMU37108 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002715	Cla002715	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0051777	S1_0051777	EST
S1_0122674	S1_0122674	EST
S2_0145326	S2_0145326	EST
S3_0048579	S3_0048579	EST
S3_0053277	S3_0053277	EST