WMU33025 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU33025
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 23605711 .. 23606649 (-)
Sequence length	958

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAATAACGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTTGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATCTAACAGCAATTTCGCTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTGCTAATAAGGCCAACCTAACCAATCTGAACTGACCCGGAAAATTTACTTCTCTTGCATAGGTACGCAAGAGTACTTTTAACTATTCTAGGAACCCTGAAATAGGAGGTTTTTCTAGTATGATTTCAGGACTTATGGTCGTTGACTGTACTCTATATATTAAAATCCAAAAACTTTCATGTCTCATTGTTTATAATGAAATGGGGATATGAAATTAAGAGCAAAGCTGAAGTAGCAGACTTGTGAGTCACATTTGTCAACACCTGTCTGTATTGGCCTAAAACAAGACACAACTATCTCAACTACCCACCCACACATAAACAGCCACCTTGAAGGTTAGTTTGACTGATGAAAAACCACAACTTCCAAAATTCCTTTTGGTTCACCAAGATTGAATATCTGGTTGGTTTAGTGCTTCTAAAAAGCGTTCTTATGCTTTTACAGAAACAAGCTGCTACAATTGACATAGACCTTCCAAATCCCATGTAATTGACTTTATAACTAAGTTGATTTGTTATGTTAAAACTGCCCCTTATAGTCCTAACATTGGTTCCCCATATACTGTATGAGACACTCCCCAGTAACATTTAAAGACATCTGCACGTTTTGACACATGTAGTTCATAGGAATCTGGGCCCCTGGTATTTCATATTTTTCCCCATGAGCTTCATTTATGGTTGGAATTTAAAAAAAA

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	2
Watermelon normalization and subtraction library	1

Homology

[Close]

BLAST of WMU33025 vs. TrEMBL
Match: A0A0A0L451_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.8e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3


Query: 174 NSNFASMVPPQRTFSTWRSYSLADLQECATFANKANLTNLN 233
           N+NF SMVPPQ+TFSTWRSYSLADLQECATFANKANLTNLN
Sbjct: 222 NNNFPSMVPPQKTFSTWRSYSLADLQECATFANKANLTNLN 262

Query: 234  293
           
Sbjct: 282  262

Query: 294  297
           
Sbjct: 342  262

[Close]

BLAST of WMU33025 vs. NCBI nr
Match: gi|659104048|ref|XP_008452790.1| (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3


Query: 174 NSNFASMVPPQRTFSTWRSYSLADLQECATFANKANLTNLN 233
           N+NF SMVPPQ+TFSTWRSYSLADLQECATFANKANLTNLN
Sbjct: 223 NNNFPSMVPPQKTFSTWRSYSLADLQECATFANKANLTNLN 263

Query: 234  293
           
Sbjct: 283  263

Query: 294  297
           
Sbjct: 343  263

[Close]

BLAST of WMU33025 vs. NCBI nr
Match: gi|449447177|ref|XP_004141345.1| (PREDICTED: vitellogenin-2-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3


Query: 174 NSNFASMVPPQRTFSTWRSYSLADLQECATFANKANLTNLN 233
           N+NF SMVPPQ+TFSTWRSYSLADLQECATFANKANLTNLN
Sbjct: 222 NNNFPSMVPPQKTFSTWRSYSLADLQECATFANKANLTNLN 262

Query: 234  293
           
Sbjct: 282  262

Query: 294  297
           
Sbjct: 342  262

The following BLAST results are available for this feature:

BLAST of WMU33025 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L451_CUCSA	4.8e-13	92.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1	[more]

BLAST of WMU33025 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104048\|ref\|XP_008452790.1\|	5.3e-13	92.68	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo]	[more]
gi\|449447177\|ref\|XP_004141345.1\|	5.3e-13	92.68	PREDICTED: vitellogenin-2-like [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007456	Cla007456	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0043624	S1_0043624	EST
S1_0097743	S1_0097743	EST
S2_0077139	S2_0077139	EST
S2_0123887	S2_0123887	EST
WMN07C03	WMN07C03	EST