WMU32168 (transcribed_cluster) Watermelon (97103) v1

NameWMU32168
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr0 : 3899027 .. 3899487 (+)
Sequence length382
The following sequences are available for this feature:

transcribed_cluster sequence

AAAATTGAGAAAGGGCCCTGATCGATTCTAATTTTCACTCTTTTATAGATGCATGTATTCTTATAGCCTTCTATACAATTTTCCTTTTGCCTTTCGATTCTTTATAACAAGAACAAAGAAGCTTAACGTTATGGAACCAAACTCACCTTGATCAGGACTTAGATGTTCTCAATCTGGAAAGTAAAACGGTTGTCAATCCATGCCTCGTTCTCCAAATGCCTCTCAAAAGAAGGAAGCTTCGCCTCTGTTCTTCACAGACAAAACAGATATGCTTCCAGTTCCAAAACGGCCCAGCTCAGTGTCTGTATCAACAAATATGGAACTATATTGATATTCCGTTCGAGGAGAATAGATGCCGGGTAGCAAGCTCACATCGTCTTTA
BLAST of WMU32168 vs. TAIR10
Match: AT4G38260.1 (AT4G38260.1 Protein of unknown function (DUF833))

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = -2

Query: 238 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGE 297
           KD+ + LP +++P TEY  SSIFVD     GR+GT SIS + VK+ G+
Sbjct: 193 KDEETELPHVFTPETEYHLSSIFVDMQRPTGRYGTRSISAIIVKSHGD 240

Query: 298 357
           
Sbjct: 253 240

Query: 358 382
           
Sbjct: 313 240

BLAST of WMU32168 vs. TrEMBL
Match: U5GMY2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s21630g PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD S+LPGIY    E+Q SSIF++ DT LGR+GT S   LSVK+ GE +F+
Sbjct: 193 KDDESMLPGIYPSEREHQLSSIFIEADTPLGRYGTRSTCALSVKSSGEVNFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. TrEMBL
Match: A0A0B0NE22_GOSAR (Ser/Thr-rich T10 in DGCR region OS=Gossypium arboreum GN=F383_14615 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD+SLLP IYSP TEY  S+I++DT    GR+GT S S L+VK+ GE  F+
Sbjct: 193 KDDLSLLPHIYSPETEYDLSAIYIDTTRPQGRYGTRSQSALTVKSNGEVCFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. TrEMBL
Match: M1BZF2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021924 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-08
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           K+D S LPGIYSP  EYQ SSIFVDT+  +GRFGT S S L+V++ G+A+F+
Sbjct: 193 KED-SNLPGIYSPECEYQLSSIFVDTEMSMGRFGTRSTSSLAVRSSGDATFY 243

Query: 286 345
           
Sbjct: 253 243

Query: 346 382
           
Sbjct: 313 243

BLAST of WMU32168 vs. TrEMBL
Match: A0A0V0HVV6_SOLCH (Putative transport and Golgi organization 2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-08
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           K+D S LPGIYSP  EYQ SSIFVDT+  +GRFGT S S L+V++ G+A+F+
Sbjct: 193 KED-SNLPGIYSPECEYQLSSIFVDTEMSMGRFGTRSTSSLAVRSSGDATFY 243

Query: 286 345
           
Sbjct: 253 243

Query: 346 382
           
Sbjct: 313 243

BLAST of WMU32168 vs. TrEMBL
Match: A0A0D2VZA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G139400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD+SLLP IYSP TEY  S+I++DT +  GR+GT + S L+VK+ GE  F+
Sbjct: 193 KDDLSLLPHIYSPETEYDLSAIYIDTTSPQGRYGTRNQSALTVKSNGEVCFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. NCBI nr
Match: gi|566167847|ref|XP_006384850.1| (hypothetical protein POPTR_0004s21630g [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD S+LPGIY    E+Q SSIF++ DT LGR+GT S   LSVK+ GE +F+
Sbjct: 193 KDDESMLPGIYPSEREHQLSSIFIEADTPLGRYGTRSTCALSVKSSGEVNFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. NCBI nr
Match: gi|743895075|ref|XP_011040802.1| (PREDICTED: transport and Golgi organization 2 homolog [Populus euphratica])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD S+LPGIY    E+Q SSIF++ DT LGR+GT S   LSVK+ GE +F+
Sbjct: 193 KDDESMLPGIYPSEREHQLSSIFIEADTPLGRYGTRSTCALSVKSSGEVNFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. NCBI nr
Match: gi|728831484|gb|KHG10927.1| (Ser/Thr-rich T10 in DGCR region [Gossypium arboreum])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD+SLLP IYSP TEY  S+I++DT    GR+GT S S L+VK+ GE  F+
Sbjct: 193 KDDLSLLPHIYSPETEYDLSAIYIDTTRPQGRYGTRSQSALTVKSNGEVCFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

BLAST of WMU32168 vs. NCBI nr
Match: gi|565391661|ref|XP_006361539.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Solanum tuberosum])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           K+D S LPGIYSP  EYQ SSIFVDT+  +GRFGT S S L+V++ G+A+F+
Sbjct: 193 KED-SNLPGIYSPECEYQLSSIFVDTEMSMGRFGTRSTSSLAVRSSGDATFY 243

Query: 286 345
           
Sbjct: 253 243

Query: 346 382
           
Sbjct: 313 243

BLAST of WMU32168 vs. NCBI nr
Match: gi|823253148|ref|XP_012459190.1| (PREDICTED: transport and Golgi organization protein 2 homolog [Gossypium raimondii])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = -2

Query: 226 KDDVSLLPGIYSPRTEYQYSSIFVDTDTELGRFGTGSISVLSVKNRGEASFF 285
           KDD+SLLP IYSP TEY  S+I++DT +  GR+GT + S L+VK+ GE  F+
Sbjct: 193 KDDLSLLPHIYSPETEYDLSAIYIDTTSPQGRYGTRNQSALTVKSNGEVCFY 244

Query: 286 345
           
Sbjct: 253 244

Query: 346 382
           
Sbjct: 313 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G38260.11.9e-0750.00 Protein of unknown function (DUF833)[more]
Match NameE-valueIdentityDescription
U5GMY2_POPTR7.1e-0857.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s21630g PE=4 SV=1[more]
A0A0B0NE22_GOSAR9.3e-0857.69Ser/Thr-rich T10 in DGCR region OS=Gossypium arboreum GN=F383_14615 PE=4 SV=1[more]
M1BZF2_SOLTU9.3e-0861.54Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021924 PE=4 SV=1[more]
A0A0V0HVV6_SOLCH9.3e-0861.54Putative transport and Golgi organization 2-like OS=Solanum chacoense PE=4 SV=1[more]
A0A0D2VZA7_GOSRA1.2e-0755.77Uncharacterized protein OS=Gossypium raimondii GN=B456_012G139400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|566167847|ref|XP_006384850.1|2.7e-0857.69hypothetical protein POPTR_0004s21630g [Populus trichocarpa][more]
gi|743895075|ref|XP_011040802.1|2.7e-0857.69PREDICTED: transport and Golgi organization 2 homolog [Populus euphratica][more]
gi|728831484|gb|KHG10927.1|3.5e-0857.69Ser/Thr-rich T10 in DGCR region [Gossypium arboreum][more]
gi|565391661|ref|XP_006361539.1|3.5e-0861.54PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Solanum tubero... [more]
gi|823253148|ref|XP_012459190.1|4.6e-0855.77PREDICTED: transport and Golgi organization protein 2 homolog [Gossypium raimond... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla000617Cla000617gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0068064S1_0068064EST
S1_0071231S1_0071231EST
S1_0158407S1_0158407EST