WMU32035 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU32035
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Glutamyl-tRNA reductase-binding protein
Location	Chr5 : 2882614 .. 2884981 (+)
Sequence length	833

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGATCGAGATAGGGAAAGACGTTAACGAAGACCTTCTGTATATTGTTACTGTGGAGAGGATACTCCAGATAGATGACTTTGGGGAGGTTGGTGTTTGGGTAAACTCTTCAGATTATAAAAATAGCAAGCCCCAGATCCTCTTCGAAATTGTGCAGAAAAGCTAGTGGACGAGATAAACACAAACAATGCCGAAGATGTTCATCGCTTTTGCAACATATATGCTGATTTGAACTTACAGTTTACAGAAGCAAAACTGATATGGGTAGATCGGTTAGGCTTCGACATGCGTGTATTCTCTCCTCAAAATGGGACATTTTGAATTCCGAACTTCCTTTTCCTAGAGAAGTTACGGATGAGAAAGGTGCAAAGTCAACATTTAACGGCATGTCCCAACAAGCTTGGGAGGTTGAAAGGAATTTCCAGGCTCCAGATTTTTGAGAGGGTGAAGCAATTCAAGATGATAAAACCATTGCATAGTAATAGTGTAGAGTAGCTATGATGTGCTTTTCTTGCTCTCTTTTAAAACTTCTTACCATTTATGAAAGAGCTTGAGTGTTGCTTAAGGTGTGAGAATGAGAAGTTTAGTTATGTCCAAACCCAGGGTAGAACTGAATGAATAGCTTGTTTTTTATATTCATATTTTCTTAGTTAAAGTTGAGCCAAGCAAATATATTTGAGATTTAAAAACGCGTACTAGACGTAAAGGTTTGAAATCGTCTATAAAAAATGTCAATTTTATATCCTAAATTGTGTTATTAGAGTTCATCAATGTCTTTATTGAGACACTATTGAAACTTTAAGGACCAAGAAGATATCAAATTCAAATCTACGT

Library


Library category	ESTs
watermelon fruit 10d library	6
watermelon fruit 18d library	3

Homology

[Close]

BLAST of WMU32035 vs. TAIR10
Match: AT3G21200.1 (AT3G21200.1 proton gradient regulation 7)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-17
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 3


Query: 129 APDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQ 188
           +PDPLR+ AE +V++IN NN ED+ RFCN+Y DL+   +E K+IW+DRLGFD+RV+SP+
Sbjct: 196 SPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDFVVSETKMIWMDRLGFDLRVWSPR 254

Query: 189  248
           
Sbjct: 256  254

Query: 249  306
           
Sbjct: 316  254

HSP 2 Score: 60.8 bits (146), Expect = 1.5e-09
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 7   EIGKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQILFEIVQ 66
           + G++V ED LY+V V+R+LQ++DF E G+WV SSDYKN+ P  L +I +
Sbjct: 156 KFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAE 205

Query: 67   126
           
Sbjct: 216  205

Query: 127  157
           
Sbjct: 276  205

HSP 3 Score: 60.1 bits (144), Expect = 2.5e-09
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 2


Query: 314 ILNSELPFPREVTDEKGAKSTFNGMSQQAWEVERNFQAPDF 373
           + +  +PFP EVTDEKGAKS+FNGMSQ AWEVE+++   DF
Sbjct: 256 VYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSYCPADF 296

Query: 374  433
           
Sbjct: 316  296

Query: 434  437
           
Sbjct: 376  296

[Close]

BLAST of WMU32035 vs. Swiss-Prot
Match: GLUBP_ARATH (Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GLUTRBP PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-16
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 3


Query: 129 APDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQ 188
           +PDPLR+ AE +V++IN NN ED+ RFCN+Y DL+   +E K+IW+DRLGFD+RV+SP+
Sbjct: 196 SPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDFVVSETKMIWMDRLGFDLRVWSPR 254

Query: 189  248
           
Sbjct: 256  254

Query: 249  306
           
Sbjct: 316  254

HSP 2 Score: 60.8 bits (146), Expect = 2.6e-08
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 7   EIGKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQILFEIVQ 66
           + G++V ED LY+V V+R+LQ++DF E G+WV SSDYKN+ P  L +I +
Sbjct: 156 KFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAE 205

Query: 67   126
           
Sbjct: 216  205

Query: 127  157
           
Sbjct: 276  205

HSP 3 Score: 60.1 bits (144), Expect = 4.5e-08
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 2


Query: 314 ILNSELPFPREVTDEKGAKSTFNGMSQQAWEVERNFQAPDF 373
           + +  +PFP EVTDEKGAKS+FNGMSQ AWEVE+++   DF
Sbjct: 256 VYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSYCPADF 296

Query: 374  433
           
Sbjct: 316  296

Query: 434  437
           
Sbjct: 376  296

[Close]

BLAST of WMU32035 vs. TrEMBL
Match: A0A0D2QDU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLRN AE++V+EINTNN EDVHRFCN+Y DL+ Q +EAK+IWVDRLGFD+R++SPQ G
Sbjct: 166 PDPLRNSAEEIVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDRLGFDLRIYSPQKG 225

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F +    F  ++   K               ++       FE+VKQ K I
Sbjct: 226 VFDV-RIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDFEKVKQLKKI 275

Query: 252  311
           
Sbjct: 286  275

Query: 312  371
           
Sbjct: 346  275

Query: 372  431
           
Sbjct: 406  275

Query: 432  465
           
Sbjct: 466  275

[Close]

BLAST of WMU32035 vs. TrEMBL
Match: A0A0D2QDU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-03
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 13  GKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQIL 72
           G+  + D LY V V+R+LQ++D  E GVWV SSDYKN+ P  L
Sbjct: 127 GESADVDNLYTVDVQRVLQMEDLNEDGVWVTSSDYKNANPDPL 169

Query: 73   132
           
Sbjct: 187  169

Query: 133  142
           
Sbjct: 247  169

HSP 2 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLRN AE++V+EINTNN EDVHRFCN+Y DL+ Q +EAK+IWVDRLGFD+R++SPQ G
Sbjct: 193 PDPLRNSAEEIVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDRLGFDLRIYSPQKG 252

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F +    F  ++   K               ++       FE+VKQ K I
Sbjct: 253 VFDV-RIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDFEKVKQLKKI 302

Query: 252  311
           
Sbjct: 313  302

Query: 312  371
           
Sbjct: 373  302

Query: 372  431
           
Sbjct: 433  302

Query: 432  465
           
Sbjct: 493  302

[Close]

BLAST of WMU32035 vs. TrEMBL
Match: A0A0D2TNH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-03
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 13  GKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQIL 72
           G+  + D LY V V+R+LQ++D  E GVWV SSDYKN+ P  L
Sbjct: 154 GESADVDNLYTVDVQRVLQMEDLNEDGVWVTSSDYKNANPDPL 196

Query: 73   132
           
Sbjct: 214  196

Query: 133  142
           
Sbjct: 274  196

HSP 2 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLRN AE++V+EINTNN EDVHRFCN+Y DL+ Q +EAK+IWVD LGFD+R++SPQ G
Sbjct: 70  PDPLRNSAEEIVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDCLGFDLRIYSPQKG 129

Query: 192 TF 251
            F
Sbjct: 130 VF 131

Query: 252  311
           
Sbjct: 190  131

Query: 312  318
           
Sbjct: 250  131

[Close]

BLAST of WMU32035 vs. TrEMBL
Match: Q6UA21_GOSBA (Fiber protein Fb4 (Fragment) OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 2


Query: 293 ILSSKWDILNSELPFPREVTDEKGAKSTFNGMSQQAWEVERNFQAPDF 352
           I S +  + +  +PFPREVTDEKGAKS+FNGMSQ AWEVE+NF APDF
Sbjct: 123 IYSPQKGVFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDF 170

Query: 353  412
           
Sbjct: 183  170

Query: 413  437
           
Sbjct: 243  170

HSP 2 Score: 51.6 bits (122), Expect = 1.8e-03
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 13  GKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQIL 72
           G+  + D LY V V+R+LQ++D  E GVWV SSDYKN+ P  L
Sbjct: 31  GESADVDNLYTVDVQRVLQMEDLNEDGVWVTSSDYKNANPDPL 73

Query: 73   132
           
Sbjct: 91   73

Query: 133  142
           
Sbjct: 151  73

HSP 3 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLR+ AEK VDEINTNN EDV+RFCNIY DL+ Q  EAKLIWVDRLGFDMR+ SPQ  
Sbjct: 210 PDPLRDSAEKFVDEINTNNMEDVNRFCNIYVDLDFQALEAKLIWVDRLGFDMRISSPQKD 269

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F +    F  ++   K       +       ++       F++VKQ K I
Sbjct: 270 VFEV-RIPFPREVTDEKGAKSSFNSMSQLAWEVEKNYNAPDFKKVKQLKQI 319

Query: 252  311
           
Sbjct: 330  319

Query: 312  371
           
Sbjct: 390  319

Query: 372  431
           
Sbjct: 450  319

Query: 432  465
           
Sbjct: 510  319

[Close]

BLAST of WMU32035 vs. TrEMBL
Match: F6HBU8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01970 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1   EIEIGKDVNEDLLYIVTVERILQIDDFGEVGVWVNSSDYKNSKPQILFEIVQK 60
           E   GK+V+E+LL++V+VER+LQ++DF EVG WV SSDY+ + P  L +  +K
Sbjct: 167 ERRFGKEVDENLLHVVSVERVLQMEDFQEVGTWVTSSDYRTANPDPLRDSAEK 219

Query: 61   120
           
Sbjct: 227  219

Query: 121  160
           
Sbjct: 287  219

HSP 2 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLR+ AEK+V +IN NN EDV RFCNIYADL  Q +EAK++WVDRLGFDMR++SP NG
Sbjct: 205 PDPLRDIAEKIVSDINANNMEDVLRFCNIYADLQFQVSEAKIVWVDRLGFDMRLYSPPNG 264

Query: 192 TF 251
           T+
Sbjct: 265 TY 266

Query: 252  311
           
Sbjct: 325  266

Query: 312  318
           
Sbjct: 385  266

[Close]

BLAST of WMU32035 vs. NCBI nr
Match: gi|449432392|ref|XP_004133983.1| (PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 3


Query: 129 APDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQN 188
           +PDPLRNCAEKLVD+INTNN+EDV+RFCNIYADLNLQFTEAKLIWVDRLGFD+R+FSPQN
Sbjct: 203 SPDPLRNCAEKLVDDINTNNSEDVNRFCNIYADLNLQFTEAKLIWVDRLGFDVRIFSPQN 262

Query: 189 GTF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMIKPLHS 248
           G F I    F  ++   K           +   ++       FERVKQFKMIK LHS
Sbjct: 263 GIFEI-RIPFPREVTDEKGAKSTFNGMSQQAWEVEKNFVAPDFERVKQFKMIKSLHS 318

Query: 249  308
           
Sbjct: 323  318

Query: 309  368
           
Sbjct: 383  318

Query: 369  428
           
Sbjct: 443  318

Query: 429  480
           
Sbjct: 503  318

[Close]

BLAST of WMU32035 vs. NCBI nr
Match: gi|659075784|ref|XP_008438328.1| (PREDICTED: uncharacterized protein LOC103483466 isoform X1 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 3


Query: 129 APDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQN 188
           +PDPLRNCAEKLVDEINTNNAEDV+RFCNIYADLNLQFTEAKLIWVDRLGFD+R+FSPQN
Sbjct: 203 SPDPLRNCAEKLVDEINTNNAEDVNRFCNIYADLNLQFTEAKLIWVDRLGFDVRIFSPQN 262

Query: 189 GTF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMIKPL 248
           G F I    F  ++   K           +   ++       FERVKQFKMIK +
Sbjct: 263 GIFEI-RIPFPREVTDEKGAKSTFNGMSQQAWEVERNFVAPDFERVKQFKMIKTI 316

Query: 249  308
           
Sbjct: 323  316

Query: 309  368
           
Sbjct: 383  316

Query: 369  428
           
Sbjct: 443  316

Query: 429  474
           
Sbjct: 503  316

[Close]

BLAST of WMU32035 vs. NCBI nr
Match: gi|823227780|ref|XP_012446670.1| (PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLRN AE++V+EINTNN EDVHRFCN+Y DL+ Q +EAK+IWVDRLGFD+R++SPQ G
Sbjct: 193 PDPLRNSAEEIVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDRLGFDLRIYSPQKG 252

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F +    F  ++   K               ++       FE+VKQ K I
Sbjct: 253 VFDV-RIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDFEKVKQLKKI 302

Query: 252  311
           
Sbjct: 313  302

Query: 312  371
           
Sbjct: 373  302

Query: 372  431
           
Sbjct: 433  302

Query: 432  465
           
Sbjct: 493  302

[Close]

BLAST of WMU32035 vs. NCBI nr
Match: gi|823227784|ref|XP_012446671.1| (PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X2 [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLRN AE++V+EINTNN EDVHRFCN+Y DL+ Q +EAK+IWVDRLGFD+R++SPQ G
Sbjct: 166 PDPLRNSAEEIVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDRLGFDLRIYSPQKG 225

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F +    F  ++   K               ++       FE+VKQ K I
Sbjct: 226 VFDV-RIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDFEKVKQLKKI 275

Query: 252  311
           
Sbjct: 286  275

Query: 312  371
           
Sbjct: 346  275

Query: 372  431
           
Sbjct: 406  275

Query: 432  465
           
Sbjct: 466  275

[Close]

BLAST of WMU32035 vs. NCBI nr
Match: gi|657976765|ref|XP_008380274.1| (PREDICTED: uncharacterized protein LOC103443240 [Malus domestica])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 57/111 (51.35%), Postives = 69/111 (62.16%), Query Frame = 3


Query: 132 PDPLRNCAEKLVDEINTNNAEDVHRFCNIYADLNLQFTEAKLIWVDRLGFDMRVFSPQNG 191
           PDPLR+ A KLV+EINTNN ED++RFCNIYADLN Q +EAKL+WVDRLGFD+R++SPQ G
Sbjct: 205 PDPLRDFAVKLVNEINTNNIEDINRFCNIYADLNFQVSEAKLVWVDRLGFDLRLWSPQEG 264

Query: 192 TF*IPNFLFLEKLRMRKVQSQHLTACPNKLGRLKGISRLQIFERVKQFKMI 251
            F I    F   +   K               ++       FERVKQ K I
Sbjct: 265 IFEI-RIPFSRXVTDEKGAKSMFNCMSQLAWEVEKNFHAPDFERVKQVKKI 314

Query: 252  311
           
Sbjct: 325  314

Query: 312  371
           
Sbjct: 385  314

Query: 372  431
           
Sbjct: 445  314

Query: 432  465
           
Sbjct: 505  314

The following BLAST results are available for this feature:

BLAST of WMU32035 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21200.1	4.3e-17	59.32	proton gradient regulation 7	[more]

BLAST of WMU32035 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GLUBP_ARATH	7.6e-16	59.32	Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana G...	[more]

BLAST of WMU32035 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2QDU1_GOSRA	1.6e-20	48.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1	[more]
A0A0D2QDU1_GOSRA	1.8e-03	53.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1	[more]
A0A0D2TNH5_GOSRA	1.8e-03	53.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G118600 PE=4 SV=1	[more]
Q6UA21_GOSBA	5.7e-10	68.75	Fiber protein Fb4 (Fragment) OS=Gossypium barbadense PE=2 SV=1	[more]
F6HBU8_VITVI	1.3e-06	50.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01970 PE=4 SV=...	[more]

BLAST of WMU32035 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432392\|ref\|XP_004133983.1\|	2.2e-31	62.39	PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic [Cucumis sativ...	[more]
gi\|659075784\|ref\|XP_008438328.1\|	1.9e-30	62.61	PREDICTED: uncharacterized protein LOC103483466 isoform X1 [Cucumis melo]	[more]
gi\|823227780\|ref\|XP_012446670.1\|	1.2e-21	48.65	PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Go...	[more]
gi\|823227784\|ref\|XP_012446671.1\|	1.2e-21	48.65	PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X2 [Go...	[more]
gi\|657976765\|ref\|XP_008380274.1\|	1.0e-20	51.35	PREDICTED: uncharacterized protein LOC103443240 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012349	Split_barrel_FMN-bd
IPR019595	DUF2470

Vocabulary: **Molecular Function**
Term	Definition
GO:0010181	FMN binding
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021402	Cla021402	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0012674	S1_0012674	EST
S1_0057909	S1_0057909	EST
S1_0060830	S1_0060830	EST
S1_0095245	S1_0095245	EST
S1_0110084	S1_0110084	EST
S1_0120587	S1_0120587	EST
S2_0046003	S2_0046003	EST
S2_0132555	S2_0132555	EST
S2_0156800	S2_0156800	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012349	FMN-binding split barrel	unknown	SSF50475	FMN-binding split barrel	coord: 12..135 score: 1.41
IPR019595	Domain of unknown function DUF2470	GENE3D	G3DSA:3.20.180.10		coord: 46..136 score: 1.
IPR019595	Domain of unknown function DUF2470	PFAM	PF10615	DUF2470	coord: 53..127 score: 3.
None	No IPR available	PANTHER	PTHR13343	CREG1 PROTEIN	coord: 5..144 score: 2.5
None	No IPR available	PANTHER	PTHR13343:SF14	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MXL8	coord: 5..144 score: 2.5