WMU31652 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU31652
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSphingoid base hydroxylase 2
LocationChr11 : 6884985 .. 6885223 (-)
Sequence length257
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATGGCAGCAAGTTTTAACTTTTCACAGCCCTTCTTTGTTACATGGGATAGAATACTTGGTACCTATATGCCTTACTCCTTGGAGAAGAGAGCAGGTGGCGGCTTTGAAGCGCGGCCAAAGATTGAATAAATACTGTAAGCAGCAATCTGTTGCTTATATTATATTATTTGTATCCCACAACTATATAATTTGTATATTACTCCTATTGTTGCTATTTTTATTACTTTTTTTTTTCTTTCCTCTTCCTCTCTCCTACC
Homology
[Close]
BLAST of WMU31652 vs. TAIR10
Match: AT1G69640.1 (AT1G69640.1 sphingoid base hydroxylase 1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-13
Identity = 32/38 (84.21%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 72
           +NFSQPFFV WDRILGTYMPYSLEKR  GGFEARP  E
Sbjct: 219 YNFSQPFFVMWDRILGTYMPYSLEKREDGGFEARPTKE 256

Query: 73   127
           
Sbjct: 279  256

[Close]
BLAST of WMU31652 vs. TAIR10
Match: AT1G14290.1 (AT1G14290.1 sphingoid base hydroxylase 2)

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-13
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARP 72
           +NFSQPFFV WDRILGTY+PYSLEKRA GGFE RP
Sbjct: 218 YNFSQPFFVMWDRILGTYLPYSLEKRANGGFETRP 252

Query: 73   118
           
Sbjct: 278  252

[Close]
BLAST of WMU31652 vs. Swiss-Prot
Match: SBH1_ARATH (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-12
Identity = 32/38 (84.21%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 72
           +NFSQPFFV WDRILGTYMPYSLEKR  GGFEARP  E
Sbjct: 219 YNFSQPFFVMWDRILGTYMPYSLEKREDGGFEARPTKE 256

Query: 73   127
           
Sbjct: 279  256

[Close]
BLAST of WMU31652 vs. Swiss-Prot
Match: SBH2_ARATH (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-12
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARP 72
           +NFSQPFFV WDRILGTY+PYSLEKRA GGFE RP
Sbjct: 218 YNFSQPFFVMWDRILGTYLPYSLEKRANGGFETRP 252

Query: 73   118
           
Sbjct: 278  252

[Close]
BLAST of WMU31652 vs. TrEMBL
Match: A0A0A0LJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 66
           + FNFSQPFFVTWDRILGTYMPYSLEKRA GGFEARPKIE
Sbjct: 183 SKFNFSQPFFVTWDRILGTYMPYSLEKRASGGFEARPKIE 222

Query: 67   126
           
Sbjct: 243  222

[Close]
BLAST of WMU31652 vs. TrEMBL
Match: A0A0A0KQL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605020 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-11
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPK 66
           + +NFSQPFFVTWDRI GTYMPYSLEKRAGGGFEAR K
Sbjct: 214 SKYNFSQPFFVTWDRIFGTYMPYSLEKRAGGGFEARVK 251

Query: 67   121
           
Sbjct: 274  251

[Close]
BLAST of WMU31652 vs. TrEMBL
Match: W9QTZ8_9ROSA (Sphingoid base hydroxylase 2 OS=Morus notabilis GN=L484_003195 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARP 66
           + +NFSQPFFV WDRILGTYMPYSL+KRAGGGFEARP
Sbjct: 215 SKYNFSQPFFVMWDRILGTYMPYSLDKRAGGGFEARP 251

Query: 67   118
           
Sbjct: 275  251

[Close]
BLAST of WMU31652 vs. TrEMBL
Match: W1NGV5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00010p00259130 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-11
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARP 72
           +NFSQPFF+ WD+ILGTYMPYSLEKRAGGGFEARP
Sbjct: 217 YNFSQPFFIVWDKILGTYMPYSLEKRAGGGFEARP 251

Query: 73   118
           
Sbjct: 277  251

[Close]
BLAST of WMU31652 vs. TrEMBL
Match: M5XMN9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010258mg PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPK 66
           + +NFSQPFFV WDRILGT+MPYSLEKRAGGGFE RPK
Sbjct: 214 SKYNFSQPFFVMWDRILGTHMPYSLEKRAGGGFEVRPK 251

Query: 67   121
           
Sbjct: 274  251

[Close]
BLAST of WMU31652 vs. NCBI nr
Match: gi|659082180|ref|XP_008441706.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 66
           + FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE
Sbjct: 214 SKFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 253

Query: 67   126
           
Sbjct: 274  253

[Close]
BLAST of WMU31652 vs. NCBI nr
Match: gi|449442297|ref|XP_004138918.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 66
           + FNFSQPFFVTWDRILGTYMPYSLEKRA GGFEARPKIE
Sbjct: 214 SKFNFSQPFFVTWDRILGTYMPYSLEKRASGGFEARPKIE 253

Query: 67   126
           
Sbjct: 274  253

[Close]
BLAST of WMU31652 vs. NCBI nr
Match: gi|700206260|gb|KGN61379.1| (hypothetical protein Csa_2G101090 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 7   ASFNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPKIE 66
           + FNFSQPFFVTWDRILGTYMPYSLEKRA GGFEARPKIE
Sbjct: 183 SKFNFSQPFFVTWDRILGTYMPYSLEKRASGGFEARPKIE 222

Query: 67   126
           
Sbjct: 243  222

[Close]
BLAST of WMU31652 vs. NCBI nr
Match: gi|694361203|ref|XP_009360346.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Pyrus x bretschneideri])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPK 72
           +NFSQPFFV WDRILGTYMPYSLEKRAGGGFE RPK
Sbjct: 216 YNFSQPFFVVWDRILGTYMPYSLEKRAGGGFEVRPK 251

Query: 73   121
           
Sbjct: 276  251

[Close]
BLAST of WMU31652 vs. NCBI nr
Match: gi|657994337|ref|XP_008389473.1| (PREDICTED: sphinganine C(4)-monooxygenase 1 [Malus domestica])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 13  FNFSQPFFVTWDRILGTYMPYSLEKRAGGGFEARPK 72
           +NFSQPFFV WDRILGTYMPYSLEKRAGGGFE RPK
Sbjct: 216 YNFSQPFFVMWDRILGTYMPYSLEKRAGGGFEVRPK 251

Query: 73   121
           
Sbjct: 276  251

The following BLAST results are available for this feature:
BLAST of WMU31652 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69640.12.6e-1384.21 sphingoid base hydroxylase 1[more]
AT1G14290.14.4e-1385.71 sphingoid base hydroxylase 2[more]
BLAST of WMU31652 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SBH1_ARATH4.6e-1284.21Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1[more]
SBH2_ARATH7.8e-1285.71Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1[more]
BLAST of WMU31652 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJX9_CUCSA2.2e-1392.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1[more]
A0A0A0KQL6_CUCSA3.5e-1186.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605020 PE=3 SV=1[more]
W9QTZ8_9ROSA4.6e-1186.49Sphingoid base hydroxylase 2 OS=Morus notabilis GN=L484_003195 PE=3 SV=1[more]
W1NGV5_AMBTC6.0e-1188.57Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00010p00259130 PE=3 SV=... [more]
M5XMN9_PRUPE6.0e-1184.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010258mg PE=3 SV=1[more]
BLAST of WMU31652 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082180|ref|XP_008441706.1|2.9e-1495.00PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo][more]
gi|449442297|ref|XP_004138918.1|1.4e-1392.50PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus][more]
gi|700206260|gb|KGN61379.1|1.4e-1392.50hypothetical protein Csa_2G101090 [Cucumis sativus][more]
gi|694361203|ref|XP_009360346.1|1.7e-1191.67PREDICTED: sphinganine C(4)-monooxygenase 1-like [Pyrus x bretschneideri][more]
gi|657994337|ref|XP_008389473.1|2.3e-1191.67PREDICTED: sphinganine C(4)-monooxygenase 1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla004167Cla004167gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0155414S1_0155414EST
S2_0133157S2_0133157EST
S4_0129281S4_0129281EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11863STEROL DESATURASEcoord: 3..39
score: 4.5
NoneNo IPR availablePANTHERPTHR11863:SF52SUBFAMILY NOT NAMEDcoord: 3..39
score: 4.5