WMU31448 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU31448
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGH3.1
LocationChr5 : 10958305 .. 10958490 (+)
Sequence length189
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TCAAGAGGAGCGTCTATCAACCAATATAAGGTTCCGAGGTGTGTGAATTTTACTCCCATTATGGAACTTCTCGATTCTAGAGTAGTATCGGCGCACTTTTAGTCCTGCTCTGCCACATTGGACTCCAGCTAGGACACGCTAATTTCTTTTTTTTTTCTTTTTCTTTTTCTTTTCTTTTCTTTTCTTTAA
Homology
[Close]
BLAST of WMU31448 vs. TAIR10
Match: AT2G14960.1 (AT2G14960.1 Auxin-responsive GH3 family protein)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-12
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPI+ELLDSRVVSAHF
Sbjct: 544 SRGASINQYKVPRCVNFTPIVELLDSRVVSAHF 576

Query: 61   100
           
Sbjct: 604  576

[Close]
BLAST of WMU31448 vs. TAIR10
Match: AT4G37390.1 (AT4G37390.1 Auxin-responsive GH3 family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-12
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCV+FTPIMELLDSRVVSAHF
Sbjct: 558 SRGASINQYKVPRCVSFTPIMELLDSRVVSAHF 590

Query: 61   100
           
Sbjct: 618  590

[Close]
BLAST of WMU31448 vs. TAIR10
Match: AT2G23170.1 (AT2G23170.1 Auxin-responsive GH3 family protein)

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCV+FTPIMELLDSRVVS HF
Sbjct: 550 SRGASINQYKVPRCVSFTPIMELLDSRVVSTHF 582

Query: 61   100
           
Sbjct: 610  582

[Close]
BLAST of WMU31448 vs. TAIR10
Match: AT1G59500.1 (AT1G59500.1 Auxin-responsive GH3 family protein)

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-11
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRG+SINQYKVPRCV+ TPIM+LLDSRVVSAHF
Sbjct: 552 SRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHF 584

Query: 61   100
           
Sbjct: 612  584

[Close]
BLAST of WMU31448 vs. TAIR10
Match: AT4G27260.1 (AT4G27260.1 Auxin-responsive GH3 family protein)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-08
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           S GASINQYK PRCV F PI+ELL+SRVV ++F
Sbjct: 563 SLGASINQYKTPRCVKFAPIIELLNSRVVDSYF 595

Query: 61   100
           
Sbjct: 623  595

[Close]
BLAST of WMU31448 vs. Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPI+ELLDSRVVSAHF
Sbjct: 544 SRGASINQYKVPRCVNFTPIVELLDSRVVSAHF 576

Query: 61   100
           
Sbjct: 604  576

[Close]
BLAST of WMU31448 vs. Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 31/33 (93.94%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCV+FTPIMELLDSRVVS HF
Sbjct: 550 SRGASINQYKVPRCVSFTPIMELLDSRVVSTHF 582

Query: 61   100
           
Sbjct: 610  582

[Close]
BLAST of WMU31448 vs. Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRG+SINQYKVPRCV+ TPIM+LLDSRVVSAHF
Sbjct: 552 SRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHF 584

Query: 61   100
           
Sbjct: 612  584

[Close]
BLAST of WMU31448 vs. Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCV F PI+ELLDSRVVS+HF
Sbjct: 559 SRGASINQYKVPRCVTFPPIVELLDSRVVSSHF 591

Query: 61   100
           
Sbjct: 619  591

[Close]
BLAST of WMU31448 vs. Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCV F PI+ELLDSRVVS+HF
Sbjct: 559 SRGASINQYKVPRCVTFPPIVELLDSRVVSSHF 591

Query: 61   100
           
Sbjct: 619  591

[Close]
BLAST of WMU31448 vs. TrEMBL
Match: A0A0K9RRS3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_036850 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 549 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 581

Query: 61   100
           
Sbjct: 609  581

[Close]
BLAST of WMU31448 vs. TrEMBL
Match: A0A0D2W2X4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 557 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 589

Query: 61   100
           
Sbjct: 617  589

[Close]
BLAST of WMU31448 vs. TrEMBL
Match: A0A061E230_THECC (Auxin-responsive GH3 family protein OS=Theobroma cacao GN=TCM_007172 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 585

Query: 61   100
           
Sbjct: 613  585

[Close]
BLAST of WMU31448 vs. TrEMBL
Match: A0A0D2R7H1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021400 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVS+HF
Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSSHF 585

Query: 61   100
           
Sbjct: 613  585

[Close]
BLAST of WMU31448 vs. TrEMBL
Match: F6H697_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00310 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVS+HF
Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSSHF 585

Query: 61   100
           
Sbjct: 613  585

[Close]
BLAST of WMU31448 vs. NCBI nr
Match: gi|902231172|gb|KNA22163.1| (hypothetical protein SOVF_036850 [Spinacia oleracea])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 549 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 581

Query: 61   100
           
Sbjct: 609  581

[Close]
BLAST of WMU31448 vs. NCBI nr
Match: gi|823260548|ref|XP_012462997.1| (PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Gossypium raimondii])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 557 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 589

Query: 61   100
           
Sbjct: 617  589

[Close]
BLAST of WMU31448 vs. NCBI nr
Match: gi|1009170815|ref|XP_015866400.1| (PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Ziziphus jujuba])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 551 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 583

Query: 61   100
           
Sbjct: 611  583

[Close]
BLAST of WMU31448 vs. NCBI nr
Match: gi|590687104|ref|XP_007042570.1| (Auxin-responsive GH3 family protein [Theobroma cacao])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF
Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 585

Query: 61   100
           
Sbjct: 613  585

[Close]
BLAST of WMU31448 vs. NCBI nr
Match: gi|976905700|gb|KVH93320.1| (GH3 auxin-responsive promoter [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1   SRGASINQYKVPRCVNFTPIMELLDSRVVSAHF 60
           SRGASINQYKVPRCVNFTPIMELLDSRVVS+HF
Sbjct: 550 SRGASINQYKVPRCVNFTPIMELLDSRVVSSHF 582

Query: 61   100
           
Sbjct: 610  582

The following BLAST results are available for this feature:
BLAST of WMU31448 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14960.11.6e-1296.97 Auxin-responsive GH3 family protein[more]
AT4G37390.12.1e-1296.97 Auxin-responsive GH3 family protein[more]
AT2G23170.16.1e-1293.94 Auxin-responsive GH3 family protein[more]
AT1G59500.16.8e-1187.88 Auxin-responsive GH3 family protein[more]
AT4G27260.17.0e-0872.73 Auxin-responsive GH3 family protein[more]
BLAST of WMU31448 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GH31_ARATH2.9e-1196.97Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=... [more]
GH33_ARATH1.1e-1093.94Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=... [more]
GH34_ARATH1.2e-0987.88Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=... [more]
GH38_ORYSI1.6e-0987.88Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indi... [more]
GH38_ORYSJ1.6e-0987.88Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japo... [more]
BLAST of WMU31448 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K9RRS3_SPIOL1.1e-09100.00Uncharacterized protein OS=Spinacia oleracea GN=SOVF_036850 PE=4 SV=1[more]
A0A0D2W2X4_GOSRA1.1e-09100.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048400 PE=4 SV=1[more]
A0A061E230_THECC1.1e-09100.00Auxin-responsive GH3 family protein OS=Theobroma cacao GN=TCM_007172 PE=4 SV=1[more]
A0A0D2R7H1_GOSRA2.4e-0996.97Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021400 PE=4 SV=1[more]
F6H697_VITVI2.4e-0996.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00310 PE=1 SV=... [more]
BLAST of WMU31448 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|902231172|gb|KNA22163.1|4.1e-10100.00hypothetical protein SOVF_036850 [Spinacia oleracea][more]
gi|823260548|ref|XP_012462997.1|4.1e-10100.00PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Gossypium raimo... [more]
gi|1009170815|ref|XP_015866400.1|4.1e-10100.00PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Ziziphus jujuba... [more]
gi|590687104|ref|XP_007042570.1|4.1e-10100.00Auxin-responsive GH3 family protein [Theobroma cacao][more]
gi|976905700|gb|KVH93320.1|9.2e-1096.97GH3 auxin-responsive promoter [Cynara cardunculus var. scolymus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla013110Cla013110gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0011461S1_0011461EST
S1_0137838S1_0137838EST
S2_0055366S2_0055366EST