WMU30059 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU30059
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcription factor, putative
Location	Chr5 : 2803200 .. 2803891 (-)
Sequence length	699

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGTGTGAGTATAGCACAGCCAGGGTTGAAAAATTATCCGAAAGCTGAACAGAAGATGAACCCTAATTCAAAATCCTGTTTTCGGGGGATGAACTCTGCCGCCGTTAATTTTGGGACCAGAGTTGTGAGGGAGTCGAATCCGGCCAGGCCGGTGACGGGGGAAGAGAGGGGAGAGGGGAGAGGGAACGAAGATCCAGTTGCAGAGATGGTGTCCGCCATTAAAACTTTGGGAGATGGGTTTGTAAGAATGGAGAGAATGAAGATGGAAATGGCCCGAGAGATCGAAGCAATGAGAATGGAGATGGAGATTAAACGAACAGAAATGATTCTGGATTCACAGCAGCGGATTGTGGAGGCTTTTGCTAAAAGCAGTTACAGAAAACAAGAAGAAAACCAAGAGAATTCCATCTCCCGAGGCTTAAAATGGCTTCCATTTCTCCATTTTTTGGGCTCAATTTGCTTAATTCCTAATGGGTTTTCTTCCTTCTTCTCAAAACGATGATTGGTTGCAGAGATTTTTCAGCTTCTGAAAGTCGAAAATGATCCTAGTTAGGTTCTTTTTCTAGTCTTTTGTTGCTTCTCCACTTTTTTTCCCCTTTCTTCATTGTTCTCTTCATGACTGGATTAGCTAGATTGTGATTGTCTAATCAATGTAGCCATATAAAAACTTGGTAAATTTTCACATATAGAGGTAAATTA

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU30059 vs. TAIR10
Match: AT2G44730.1 (AT2G44730.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 49/148 (33.11%), Postives = 62/148 (41.89%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKS-------CFRGMNSAAVNFGTRVVR-ESNPARPVT 61
           GVSIAQPG +   K +QK   +  +         RG+ +   ++G RVVR      +   
Sbjct: 225 GVSIAQPGPRFPGKIDQKYTASPSAGVSSNPRAGRGIGAGGSSYGARVVRIPEGGGKRGR 284

Query: 62  XXXXXXXXXXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDS 121
                      DP+ E+ SAIK LGD  V                        T+MIL+S
Sbjct: 285 EMMMKTEEDDNDPMVEIASAIKLLGDTLVRTEQTRMEMTREIEAMRMDTEMKRTKMILES 344

Query: 122 QQRIVEAFAK--SSYRKQEENQENSISR 181
           QQRIVEAFAK  S Y   EE  +   +R
Sbjct: 345 QQRIVEAFAKSLSDYTTTEEQDKKKKAR 372

Query: 182  241
           
Sbjct: 405  372

Query: 242  301
           
Sbjct: 465  372

Query: 302  361
           
Sbjct: 525  372

Query: 362  416
           
Sbjct: 585  372

[Close]

BLAST of WMU30059 vs. TrEMBL
Match: A0A0A0L413_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129620 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 79/123 (64.23%), Postives = 81/123 (65.85%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPGLK+YPKAEQKMNPNS     GMN AAVNFGTRVVRESNP RPVT        
Sbjct: 230 GVSIAQPGLKSYPKAEQKMNPNSNP-VSGMNPAAVNFGTRVVRESNPVRPVT-GKRGERE 289

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPVAEMVSAIKTLGDGFV                        TEMILDSQQRIVEAF
Sbjct: 290 RERDPVAEMVSAIKTLGDGFVRMERMKMEMAREIEAMRMEMEIKRTEMILDSQQRIVEAF 349

Query: 122 AKS 181
           AK+
Sbjct: 350 AKA 350

Query: 182  241
           
Sbjct: 410  350

Query: 242  301
           
Sbjct: 470  350

Query: 302  361
           
Sbjct: 530  350

Query: 362  371
           
Sbjct: 590  350

[Close]

BLAST of WMU30059 vs. TrEMBL
Match: W9R598_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008033 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 58/130 (44.62%), Postives = 67/130 (51.54%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPG K  PK +QK N  S S         VNFGT+VV+E +  R           
Sbjct: 232 GVSIAQPGTKFIPKFDQKGNSGSNS--------GVNFGTKVVKECSSGRA---SGLGKRE 291

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPV EMVSAIK LG+GFV                        TEMILDSQQRIVEAF
Sbjct: 292 RERDPVGEMVSAIKALGEGFVRMEQMKMEMAREIETIRMEMEMKRTEMILDSQQRIVEAF 350

Query: 122 AKSSYRKQEE 181
           AK+   K+++
Sbjct: 352 AKAMSDKKKK 350

Query: 182  241
           
Sbjct: 412  350

Query: 242  301
           
Sbjct: 472  350

Query: 302  361
           
Sbjct: 532  350

Query: 362  392
           
Sbjct: 592  350

[Close]

BLAST of WMU30059 vs. TrEMBL
Match: M5X9S0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010478m2g PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13
Identity = 59/132 (44.70%), Postives = 67/132 (50.76%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRE-SNPARP-VTXXXXXX 61
           GVSIAQPG K YPK + K   NS S   G  S       +V+RE  N  RP +       
Sbjct: 111 GVSIAQPGTKVYPKMDPKFGLNSNS---GSGSGPGYGSAKVMRECGNSVRPGLGKREREG 170

Query: 62  XXXXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVE 121
                DPVAEMVSAIK LGDGFV                        TEMILDSQQRIVE
Sbjct: 171 RERERDPVAEMVSAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILDSQQRIVE 230

Query: 122 AFAKSSYRKQEE 181
           AFAK+   K+++
Sbjct: 231 AFAKAVSEKKKK 239

Query: 182  241
           
Sbjct: 291  239

Query: 242  301
           
Sbjct: 351  239

Query: 302  361
           
Sbjct: 411  239

Query: 362  392
           
Sbjct: 471  239

[Close]

BLAST of WMU30059 vs. TrEMBL
Match: A2Q1W1_MEDTR (MADF; Homeodomain-like OS=Medicago truncatula GN=MTR_7g081190 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVS+AQPG K YPK    MN NS+S  R      +N GTR+V+E                
Sbjct: 233 GVSVAQPGSKFYPK----MNNNSESGSR------INGGTRLVKERVVLGKRERERDVERE 292

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DP+ EMV+AIK L DGFV                        TEMIL+SQQRIVEAF
Sbjct: 293 RERDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAF 352

Query: 122 AKSSYRKQEENQENSISRG 181
           AK+     E+N++  + +G
Sbjct: 353 AKAI---SEKNKKRKLRKG 358

Query: 182  241
           
Sbjct: 413  358

Query: 242  301
           
Sbjct: 473  358

Query: 302  361
           
Sbjct: 533  358

Query: 362  419
           
Sbjct: 593  358

[Close]

BLAST of WMU30059 vs. TrEMBL
Match: A0A067HCG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018620mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.2e-10
Identity = 56/140 (40.00%), Postives = 64/140 (45.71%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFR---------GMNSA-AVNFGTRVVRESNPARP 61
           GVSIAQPG K Y K     NPN    F          G  S  AVN+GTRV+R  +    
Sbjct: 210 GVSIAQPGPKIYAKIGTNPNPNPNPNFNHKPNFGSASGSGSGPAVNYGTRVLRGCDDT-- 269

Query: 62  VTXXXXXXXXXXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMIL 121
                          VAEMV+AI+ LGDGFV                        TEMIL
Sbjct: 270 ---GTGMGKREREPVVAEMVAAIRMLGDGFVKMEQMKMEMAREIETMRMEMEMKRTEMIL 329

Query: 122 DSQQRIVEAFAKSSYRKQEE 181
           DSQQRIVEAFAK+   K ++
Sbjct: 330 DSQQRIVEAFAKAVSEKSKK 344

Query: 182  241
           
Sbjct: 390  344

Query: 242  301
           
Sbjct: 450  344

Query: 302  361
           
Sbjct: 510  344

Query: 362  392
           
Sbjct: 570  344

[Close]

BLAST of WMU30059 vs. NCBI nr
Match: gi|449432382|ref|XP_004133978.1| (PREDICTED: trihelix transcription factor ASIL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 79/123 (64.23%), Postives = 81/123 (65.85%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPGLK+YPKAEQKMNPNS     GMN AAVNFGTRVVRESNP RPVT        
Sbjct: 230 GVSIAQPGLKSYPKAEQKMNPNSNP-VSGMNPAAVNFGTRVVRESNPVRPVT-GKRGERE 289

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPVAEMVSAIKTLGDGFV                        TEMILDSQQRIVEAF
Sbjct: 290 RERDPVAEMVSAIKTLGDGFVRMERMKMEMAREIEAMRMEMEIKRTEMILDSQQRIVEAF 349

Query: 122 AKS 181
           AK+
Sbjct: 350 AKA 350

Query: 182  241
           
Sbjct: 410  350

Query: 242  301
           
Sbjct: 470  350

Query: 302  361
           
Sbjct: 530  350

Query: 362  371
           
Sbjct: 590  350

[Close]

BLAST of WMU30059 vs. NCBI nr
Match: gi|659075756|ref|XP_008438313.1| (PREDICTED: B-cell lymphoma/leukemia 11B [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.3e-28
Identity = 78/123 (63.41%), Postives = 81/123 (65.85%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPGLK+YPKAEQKMNPNS     G+N AAVNFGTRVVRESNP RPVT        
Sbjct: 230 GVSIAQPGLKSYPKAEQKMNPNSNP-VSGLNPAAVNFGTRVVRESNPVRPVT-GKRGERE 289

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPVAEMVSAIKTLGDGFV                        TEMILDSQQRIVEAF
Sbjct: 290 RERDPVAEMVSAIKTLGDGFVRMERMKMEMAREIEAMRMEMEIKRTEMILDSQQRIVEAF 349

Query: 122 AKS 181
           AK+
Sbjct: 350 AKA 350

Query: 182  241
           
Sbjct: 410  350

Query: 242  301
           
Sbjct: 470  350

Query: 302  361
           
Sbjct: 530  350

Query: 362  371
           
Sbjct: 590  350

[Close]

BLAST of WMU30059 vs. NCBI nr
Match: gi|694400569|ref|XP_009375369.1| (PREDICTED: uncharacterized protein LOC103964195 [Pyrus x bretschneideri])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 59/130 (45.38%), Postives = 69/130 (53.08%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPG K YPK +QK   NS     G+NS +V    +V+RES  +            
Sbjct: 225 GVSIAQPGTKVYPKMDQKFGMNSNP---GLNSGSVYGSAKVMRESGNSGRPGLGKRERDG 284

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPVAEMVSAIK LGDGFV                        TEMILDSQQRIVEAF
Sbjct: 285 GERDPVAEMVSAIKLLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILDSQQRIVEAF 344

Query: 122 AKSSYRKQEE 181
           AK+   K+++
Sbjct: 345 AKAVSEKKKK 351

Query: 182  241
           
Sbjct: 405  351

Query: 242  301
           
Sbjct: 465  351

Query: 302  361
           
Sbjct: 525  351

Query: 362  392
           
Sbjct: 585  351

[Close]

BLAST of WMU30059 vs. NCBI nr
Match: gi|657949536|ref|XP_008343662.1| (PREDICTED: uncharacterized protein LOC103406460 [Malus domestica])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 60/132 (45.45%), Postives = 69/132 (52.27%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRE-SNPARP-VTXXXXXX 61
           GVSIAQPG K YPK +QK   NS       N A+V    +V+RE  N  RP +       
Sbjct: 228 GVSIAQPGTKVYPKMDQKFGMNS-------NPASVYGSAKVMRECGNSGRPGLGKREGNG 287

Query: 62  XXXXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVE 121
                DPVAEMVSAIK LGDGFV                        TEMILDSQQRIVE
Sbjct: 288 RERERDPVAEMVSAIKLLGDGFVRMEQMKMEMAREVEAMRMEMEMKRTEMILDSQQRIVE 347

Query: 122 AFAKSSYRKQEE 181
           AFAK+   K+++
Sbjct: 348 AFAKAVSEKKKK 352

Query: 182  241
           
Sbjct: 408  352

Query: 242  301
           
Sbjct: 468  352

Query: 302  361
           
Sbjct: 528  352

Query: 362  392
           
Sbjct: 588  352

[Close]

BLAST of WMU30059 vs. NCBI nr
Match: gi|703074303|ref|XP_010089783.1| (hypothetical protein L484_008033 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 58/130 (44.62%), Postives = 67/130 (51.54%), Query Frame = 2


Query: 2   GVSIAQPGLKNYPKAEQKMNPNSKSCFRGMNSAAVNFGTRVVRESNPARPVTXXXXXXXX 61
           GVSIAQPG K  PK +QK N  S S         VNFGT+VV+E +  R           
Sbjct: 232 GVSIAQPGTKFIPKFDQKGNSGSNS--------GVNFGTKVVKECSSGRA---SGLGKRE 291

Query: 62  XXXDPVAEMVSAIKTLGDGFVXXXXXXXXXXXXXXXXXXXXXXXXTEMILDSQQRIVEAF 121
              DPV EMVSAIK LG+GFV                        TEMILDSQQRIVEAF
Sbjct: 292 RERDPVGEMVSAIKALGEGFVRMEQMKMEMAREIETIRMEMEMKRTEMILDSQQRIVEAF 350

Query: 122 AKSSYRKQEE 181
           AK+   K+++
Sbjct: 352 AKAMSDKKKK 350

Query: 182  241
           
Sbjct: 412  350

Query: 242  301
           
Sbjct: 472  350

Query: 302  361
           
Sbjct: 532  350

Query: 362  392
           
Sbjct: 592  350

The following BLAST results are available for this feature:

BLAST of WMU30059 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44730.1	1.6e-09	33.11	Alcohol dehydrogenase transcription factor Myb/SANT-like family prot...	[more]

BLAST of WMU30059 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L413_CUCSA	1.7e-28	64.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129620 PE=4 SV=1	[more]
W9R598_9ROSA	5.5e-14	44.62	Uncharacterized protein OS=Morus notabilis GN=L484_008033 PE=4 SV=1	[more]
M5X9S0_PRUPE	3.5e-13	44.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010478m2g PE=4 SV=1	[more]
A2Q1W1_MEDTR	4.3e-11	39.57	MADF; Homeodomain-like OS=Medicago truncatula GN=MTR_7g081190 PE=4 SV=1	[more]
A0A067HCG4_CITSI	8.2e-10	40.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018620mg PE=4 SV=1	[more]

BLAST of WMU30059 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432382\|ref\|XP_004133978.1\|	3.3e-28	64.23	PREDICTED: trihelix transcription factor ASIL2 isoform X1 [Cucumis sativus]	[more]
gi\|659075756\|ref\|XP_008438313.1\|	7.3e-28	63.41	PREDICTED: B-cell lymphoma/leukemia 11B [Cucumis melo]	[more]
gi\|694400569\|ref\|XP_009375369.1\|	3.2e-15	45.38	PREDICTED: uncharacterized protein LOC103964195 [Pyrus x bretschneideri]	[more]
gi\|657949536\|ref\|XP_008343662.1\|	1.3e-13	45.45	PREDICTED: uncharacterized protein LOC103406460 [Malus domestica]	[more]
gi\|703074303\|ref\|XP_010089783.1\|	1.3e-13	44.62	hypothetical protein L484_008033 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021394	Cla021394	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0102715	S1_0102715	EST
S1_0124976	S1_0124976	EST
S2_0094949	S2_0094949	EST
S4_0034270	S4_0034270	EST
S4_0069615	S4_0069615	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31307	FAMILY NOT NAMED	coord: 2..140 score: 3.3
None	No IPR available	PANTHER	PTHR31307:SF3	ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE PROTEIN	coord: 2..140 score: 3.3