WMU29106 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU29106
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	Chr6 : 2447063 .. 2448385 (-)
Sequence length	505

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGCTGGTGGCTGCCACTCGTTTTGGCGCGGCAAAGCTCCAAAAACACTCCGCTTCAATCAACTACCAAACCATCTCTCTCTCTTCGGCGATTCAATGTTTGTAAATTGTAATGGCGACCATCTTCTCTTTTCAATCACATTCTTCCCTCCAGACCTCTCTCAATGCCATTCGACCTAATCGCCCTCTCGGAATCTGCAGAATCCAGTGCCAGGGAAATAATTTCCGCTACCCATTCGCCGAAGAATCAAGAATCCAAGCCCGAGAATGCGGTGCTGAAGGTCGCTTGGTATGGCTCCGAGCTCTTGGGGATCGCCGCTTCATTTCTCCGCCCCCCGTCGGATGTCGAAACTCCCGTTAGGGCTCAGGAGCTCGCCAGAGATCTGTCCGGTGCAATTCCTCGCCCGCTGATCGTGGAAACGATTAAGCAGGATTTTGGGCGGTACGTGTTTCGTCACAGGGAACCTTACTCTTGAAGCTTACGAAGAGGAGTGTGAATTTGCTGAT

Library


Library category	ESTs
watermelon fruit 26d library	3

Homology

[Close]

BLAST of WMU29106 vs. TAIR10
Match: AT2G46100.1 (AT2G46100.1 Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 229 THSPKNQES-KPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRP 288
           T  P+  +  +P+N +LK+AWYGSELLGIAAS  R P +    V   E+  D SG   R 
Sbjct: 45  TDEPQTSKGPEPDNVLLKIAWYGSELLGIAASVFRSP-ETSPIVTGFEVPVDCSGRAVRV 104

Query: 289 LIVETIKQDFGRYVF 348
            +V++IKQDF R  F
Sbjct: 105 AVVDSIKQDFKRSYF 118

Query: 349  408
           
Sbjct: 165  118

Query: 409  451
           
Sbjct: 225  118

HSP 2 Score: 37.7 bits (86), Expect = 8.2e-03
Identity = 16/19 (84.21%), Postives = 15/19 (78.95%), Query Frame = 2


Query: 449 FVTGNLTLEAYEEECEFAD 506
           FVTGNLT E YEE+CEFAD
Sbjct: 118 FVTGNLTPEVYEEKCEFAD 136

[Close]

BLAST of WMU29106 vs. TrEMBL
Match: A0A0A0K7I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006760 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           T SP NQESKPENAVLKVAWYGSELLGIAAS+LRPP DV+TP+RAQEL  D+SG+IPRPL
Sbjct: 40  TDSPNNQESKPENAVLKVAWYGSELLGIAASYLRPPLDVQTPLRAQELTTDVSGSIPRPL 99

Query: 289 IVETIKQDFGRYVF 348
           IVETIK+DF R  F
Sbjct: 100 IVETIKEDFRRSYF 113

Query: 349  408
           
Sbjct: 160  113

Query: 409  451
           
Sbjct: 220  113

[Close]

BLAST of WMU29106 vs. TrEMBL
Match: A0A0A0K7I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006760 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 3


Query: 111 MATIFSFQSHSSLQTSLNAIRPNRPLGICRIQCQGNN 170
           MATI SFQ HSSL TSLN+IRPN  L ICRI CQGNN
Sbjct: 1   MATIVSFQPHSSLHTSLNSIRPNPSLRICRIHCQGNN 37

Query: 171  222
           
Sbjct: 61   37

HSP 2 Score: 43.1 bits (100), Expect = 3.8e-01
Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 2


Query: 284 LGMAPSSWGSPLHFSAPRRMSKLPLGLRSSPEICPVQFLAR*SWKRLSRILGGTCFVTGN 343
           LG+A S    PL    P R  +L   +  S     +    +  ++R       + FVTGN
Sbjct: 65  LGIAASYLRPPLDVQTPLRAQELTTDVSGSIPRPLIVETIKEDFRR-------SYFVTGN 124

Query: 344 LTLEAYEEECEFAD 403
           LTL+AYEE+CEFAD
Sbjct: 125 LTLQAYEEQCEFAD 131

Query: 404  463
           
Sbjct: 185  131

Query: 464  506
           
Sbjct: 245  131

HSP 3 Score: 95.1 bits (235), Expect = 8.5e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           ++S   QES+PENA+LKVAWYGSELLGIAASF R PS VE P RA +LA D SGA+ R  
Sbjct: 59  SNSSTAQESEPENALLKVAWYGSELLGIAASFFRSPSSVEAPERAIDLAGDGSGAVDRAA 118

Query: 289 IVETIKQDFGRYVF 348
           +VETIK+DF R  F
Sbjct: 119 LVETIKEDFQRSYF 132

Query: 349  408
           
Sbjct: 179  132

Query: 409  451
           
Sbjct: 239  132

[Close]

BLAST of WMU29106 vs. TrEMBL
Match: F6I656_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02050 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 1.9e+00
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = 2


Query: 284 LGMAPSSWGSPLHFSAPRRMSKLPLGLRSSPEICPVQFLAR*SWKRLSRILGGTCFVTGN 343
           LG+A S + SP    AP R   L      + +   +    +  ++R       + FVTGN
Sbjct: 84  LGIAASFFRSPSSVEAPERAIDLAGDGSGAVDRAALVETIKEDFQR-------SYFVTGN 143

Query: 344 LTLEAYEEECEFAD 403
           LTL AYE++CEFAD
Sbjct: 144 LTLSAYEDDCEFAD 150

Query: 404  463
           
Sbjct: 204  150

Query: 464  506
           
Sbjct: 264  150

HSP 2 Score: 88.6 bits (218), Expect = 8.0e-15
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 235 SPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETP-VRAQELARDLSGAIPRPLI 294
           SP +++S+PE A+LKVAWY SELLGIA SF RPPS  E P   A ELARD SGA+ R ++
Sbjct: 49  SPTDKQSQPEKALLKVAWYSSELLGIATSFFRPPSKAEAPETAALELARDGSGAVDRAMV 108

Query: 295 VETIKQDFGRYVF 354
           V++IKQDF R  F
Sbjct: 109 VKSIKQDFERSYF 121

Query: 355  414
           
Sbjct: 169  121

Query: 415  451
           
Sbjct: 229  121

[Close]

BLAST of WMU29106 vs. TrEMBL
Match: M5X274_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011338mg PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 1.5e+00
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 2


Query: 449 FVTGNLTLEAYEEECEFAD 506
           FVTGNLTL+AYEE+CEFAD
Sbjct: 121 FVTGNLTLDAYEEDCEFAD 139

HSP 2 Score: 88.6 bits (218), Expect = 8.0e-15
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 238 PKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQ-ELARDLSGAIPRPLIV 297
           P  QES PENA+LKVAWYGSELLGIAASFLRPPS+VE   +   +L  D SGAI R  +V
Sbjct: 46  PTRQESAPENALLKVAWYGSELLGIAASFLRPPSNVEAAAKNDLKLGLDGSGAIDRTAVV 105

Query: 298 ETIKQDFGRYVF 357
           ETIK D+ R  F
Sbjct: 106 ETIKNDYERSYF 117

Query: 358  417
           
Sbjct: 166  117

Query: 418  451
           
Sbjct: 226  117

[Close]

BLAST of WMU29106 vs. TrEMBL
Match: A0A061DSV4_THECC (Nuclear transport factor 2 family protein OS=Theobroma cacao GN=TCM_005275 PE=4 SV=1)

HSP 1 Score: 38.1 bits (87), Expect = 1.2e+01
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2


Query: 449 FVTGNLTLEAYEEECEFAD 506
           FVTG LTL+AYEE CEFAD
Sbjct: 117 FVTGQLTLDAYEENCEFAD 135

HSP 2 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 250 ESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPLIVETIKQ 309
           E +PENA+LK AWYGSELLGIAAS  RPP+  E P R  ELA D +GA  R  +VETIK+
Sbjct: 89  EPEPENALLKAAWYGSELLGIAASLFRPPASAEAPAREFELAGDGAGAFDRSAVVETIKE 148

Query: 310 DFGRYVF 369
           D+ R  F
Sbjct: 149 DYQRSYF 155

Query: 370  429
           
Sbjct: 209  155

Query: 430  451
           
Sbjct: 269  155

[Close]

BLAST of WMU29106 vs. NCBI nr
Match: gi|659116628|ref|XP_008458172.1| (PREDICTED: uncharacterized protein LOC103497690 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           T SP NQESKPENAVLKVAWYGSELLGIAASFLRPPSDV+TPVRAQEL  D+SGAIPRPL
Sbjct: 40  TDSPNNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVQTPVRAQELTTDVSGAIPRPL 99

Query: 289 IVETIKQDFGRYVF 348
           IVETIK+DF R  F
Sbjct: 100 IVETIKEDFRRSYF 113

Query: 349  408
           
Sbjct: 160  113

Query: 409  451
           
Sbjct: 220  113

[Close]

BLAST of WMU29106 vs. NCBI nr
Match: gi|449441428|ref|XP_004138484.1| (PREDICTED: uncharacterized protein LOC101218208 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           T SP NQESKPENAVLKVAWYGSELLGIAAS+LRPP DV+TP+RAQEL  D+SG+IPRPL
Sbjct: 40  TDSPNNQESKPENAVLKVAWYGSELLGIAASYLRPPLDVQTPLRAQELTTDVSGSIPRPL 99

Query: 289 IVETIKQDFGRYVF 348
           IVETIK+DF R  F
Sbjct: 100 IVETIKEDFRRSYF 113

Query: 349  408
           
Sbjct: 160  113

Query: 409  451
           
Sbjct: 220  113

[Close]

BLAST of WMU29106 vs. NCBI nr
Match: gi|700190486|gb|KGN45690.1| (hypothetical protein Csa_6G006760 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           T SP NQESKPENAVLKVAWYGSELLGIAAS+LRPP DV+TP+RAQEL  D+SG+IPRPL
Sbjct: 40  TDSPNNQESKPENAVLKVAWYGSELLGIAASYLRPPLDVQTPLRAQELTTDVSGSIPRPL 99

Query: 289 IVETIKQDFGRYVF 348
           IVETIK+DF R  F
Sbjct: 100 IVETIKEDFRRSYF 113

Query: 349  408
           
Sbjct: 160  113

Query: 409  451
           
Sbjct: 220  113

[Close]

BLAST of WMU29106 vs. NCBI nr
Match: gi|225454326|ref|XP_002277369.1| (PREDICTED: uncharacterized protein LOC100258452 [Vitis vinifera])

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           ++S   QES+PENA+LKVAWYGSELLGIAASF R PS VE P RA +LA D SGA+ R  
Sbjct: 59  SNSSTAQESEPENALLKVAWYGSELLGIAASFFRSPSSVEAPERAIDLAGDGSGAVDRAA 118

Query: 289 IVETIKQDFGRYVF 348
           +VETIK+DF R  F
Sbjct: 119 LVETIKEDFQRSYF 132

Query: 349  408
           
Sbjct: 179  132

Query: 409  451
           
Sbjct: 239  132

[Close]

BLAST of WMU29106 vs. NCBI nr
Match: gi|297745341|emb|CBI40421.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 229 THSPKNQESKPENAVLKVAWYGSELLGIAASFLRPPSDVETPVRAQELARDLSGAIPRPL 288
           ++S   QES+PENA+LKVAWYGSELLGIAASF R PS VE P RA +LA D SGA+ R  
Sbjct: 43  SNSSTAQESEPENALLKVAWYGSELLGIAASFFRSPSSVEAPERAIDLAGDGSGAVDRAA 102

Query: 289 IVETIKQDFGRYVF 348
           +VETIK+DF R  F
Sbjct: 103 LVETIKEDFQRSYF 116

Query: 349  408
           
Sbjct: 163  116

Query: 409  451
           
Sbjct: 223  116

The following BLAST results are available for this feature:

BLAST of WMU29106 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46100.1	3.1e-10	46.67	Nuclear transport factor 2 (NTF2) family protein	[more]

BLAST of WMU29106 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7I1_CUCSA	2.2e-25	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006760 PE=4 SV=1	[more]
A0A0A0K7I1_CUCSA	1.8e-06	78.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006760 PE=4 SV=1	[more]
F6I656_VITVI	1.9e+00	36.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02050 PE=4 SV=...	[more]
M5X274_PRUPE	1.5e+00	89.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011338mg PE=4 SV=1	[more]
A0A061DSV4_THECC	1.2e+01	84.21	Nuclear transport factor 2 family protein OS=Theobroma cacao GN=TCM_005275 PE=4 ...	[more]

BLAST of WMU29106 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116628\|ref\|XP_008458172.1\|	6.9e-28	86.49	PREDICTED: uncharacterized protein LOC103497690 [Cucumis melo]	[more]
gi\|449441428\|ref\|XP_004138484.1\|	3.8e-26	81.08	PREDICTED: uncharacterized protein LOC101218208 [Cucumis sativus]	[more]
gi\|700190486\|gb\|KGN45690.1\|	3.8e-26	81.08	hypothetical protein Csa_6G006760 [Cucumis sativus]	[more]
gi\|225454326\|ref\|XP_002277369.1\|	1.4e-17	66.22	PREDICTED: uncharacterized protein LOC100258452 [Vitis vinifera]	[more]
gi\|297745341\|emb\|CBI40421.3\|	1.4e-17	66.22	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla006631	Cla006631	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0052407	S3_0052407	EST
S3_0143934	S3_0143934	EST
S3_0178531	S3_0178531	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34123	FAMILY NOT NAMED	coord: 11..114 score: 1.8
None	No IPR available	PANTHER	PTHR34123:SF1	SUBFAMILY NOT NAMED	coord: 11..114 score: 1.8