WMU28470 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU28470
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr4 : 10129475 .. 10132220 (-)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGTATGGGAAATTTGAAAAAAAAGAACATTCTTTCTCCAACTTTTAATCGGTTTCCCTAGCTGTCCTCACAAGATGGATTATGCGATACTGAAGCTTAGCATTTTCTTGCAGCAACCATCTCAGCCTTTTTCCGTTCTTCGATTAGCGCTTCGTTTGTGCTGTCTAGCTTCGACTGGAGTTCGCTTATTGTTTTCAGATGATCTTTGTTATGGACGTCTTTCTTACTCAAGAGTGCATCTTCTAATCTTGACAAAACGATCCTCAGCTTCAGAAGCTCTTTGGAAGAAGGGCTTCAAGGTCTGCTCAAGATCGTAGTTGACGCCGCCAAATGGTTCCGCCATTGTTGCCAAACTTCCAACTTC

Library


Library category	ESTs
watermelon fruit 10d library	5
watermelon fruit 26d library	25

Homology

[Close]

BLAST of WMU28470 vs. NCBI nr
Match: gi|659129281|ref|XP_008464609.1| (PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = -2


Query: 111 LSRLEDALLSKKDVHNKDHLKTISELQSKLDSTNEALIEERKKAEMVA 170
           LSRLE ALLSKKD HN++HLKTISELQ+KLDS N ALIEERKKAEMVA
Sbjct: 30  LSRLEAALLSKKDDHNEEHLKTISELQTKLDSANNALIEERKKAEMVA 77

Query: 171  230
           
Sbjct: 90   77

Query: 231  255
           
Sbjct: 150  77

[Close]

BLAST of WMU28470 vs. NCBI nr
Match: gi|659129279|ref|XP_008464608.1| (PREDICTED: uncharacterized protein LOC103502450 isoform X1 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = -2


Query: 108 LSRLEDALLSKKDVHNKDHLKTISELQSKLDSTNEALIEERKKAEMVAA 167
           LSRLE ALLSKKD HN++HLKTISELQ+KLDS N ALIEERKKA ++ A
Sbjct: 30  LSRLEAALLSKKDDHNEEHLKTISELQTKLDSANNALIEERKKASIIGA 78

Query: 168  227
           
Sbjct: 90   78

Query: 228  255
           
Sbjct: 150  78

The following BLAST results are available for this feature:

BLAST of WMU28470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129281\|ref\|XP_008464609.1\|	3.2e-11	85.42	PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo]	[more]
gi\|659129279\|ref\|XP_008464608.1\|	4.6e-10	77.55	PREDICTED: uncharacterized protein LOC103502450 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla006844	Cla006844	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0078763	S1_0078763	EST
S1_0081137	S1_0081137	EST
S1_0086477	S1_0086477	EST
S1_0104232	S1_0104232	EST
S1_0111287	S1_0111287	EST
S3_0021651	S3_0021651	EST
S3_0022002	S3_0022002	EST
S3_0022837	S3_0022837	EST
S3_0023450	S3_0023450	EST
S3_0028322	S3_0028322	EST
S3_0039136	S3_0039136	EST
S3_0045288	S3_0045288	EST
S3_0045699	S3_0045699	EST
S3_0051090	S3_0051090	EST
S3_0053657	S3_0053657	EST
S3_0075874	S3_0075874	EST
S3_0077277	S3_0077277	EST
S3_0079050	S3_0079050	EST
S3_0085767	S3_0085767	EST
S3_0086168	S3_0086168	EST
S3_0093869	S3_0093869	EST
S3_0094387	S3_0094387	EST
S3_0103124	S3_0103124	EST
S3_0122475	S3_0122475	EST
S3_0124248	S3_0124248	EST
S3_0128402	S3_0128402	EST
S3_0134357	S3_0134357	EST
S3_0139646	S3_0139646	EST
S3_0149072	S3_0149072	EST
S3_0166794	S3_0166794	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..72 scor
None	No IPR available	PANTHER	PTHR38377	FAMILY NOT NAMED	coord: 4..98 score: 2.0
None	No IPR available	PANTHER	PTHR38377:SF1	SUBFAMILY NOT NAMED	coord: 4..98 score: 2.0