WMU28320 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU28320
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	MICAL C-terminal-like protein, putative
Location	Chr4 : 10129492 .. 10132179 (+)
Sequence length	313

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACAATGGCGGAACCATTTGGCGGCGTCAACTACGATCCTTGAGCAGACCTTGAAGCCCCTTCTTCCAAAAGAGCTTCTGAAGCTGAGGATCGTTTGTCAAGATTAGAAGATGCACTCTTGAGTAAGAAAGACGTCCATAACAAAGATCATCTGAAAACAATAAGCGGACTCCAGTCGAAGCTAGACAGCACAAACGAAGCGCTAATCGAAGAACGGAAAAAGGCTGAGATGGTTGCTGCAGAAAATGCTAAGCTTCAGTATCGACAATAAATACCAATACTTGTGAGGACAGCTAGGGAAACCGATTAAAAG

Library


Library category	ESTs
watermelon fruit 18d library	1
watermelon fruit 26d library	2

Homology

[Close]

BLAST of WMU28320 vs. TAIR10
Match: AT3G57320.1 (AT3G57320.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.4e-07
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKK-DVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMV 118
           P   RA+EA++RL++LE AL S K D+ +   ++    LQSKL+  N  + +E+ K + +
Sbjct: 13  PFFHRATEAQERLAKLEAALASTKTDIPDAKLVEENKQLQSKLEEANATVKQEQTKVKDL 72

Query: 119 AAENAKLQYRQ*IPILVRTARETD*K 178
             ENAK +YR  I  LVR  ++ D K
Sbjct: 73  TIENAKHKYR--ILHLVRALKDADQK 96

Query: 179  238
           
Sbjct: 133  96

Query: 239  298
           
Sbjct: 193  96

Query: 299  314
           
Sbjct: 253  96

[Close]

BLAST of WMU28320 vs. TrEMBL
Match: A0A067JTC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21121 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 52/89 (58.43%), Postives = 61/89 (68.54%), Query Frame = 2


Query: 47  DLEAPSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKA 106
           +L  P  +RASEAEDRLSRLE AL SKKD  N++  KTIS LQSKL+  N  LI E++K 
Sbjct: 15  ELLKPFYQRASEAEDRLSRLEVALASKKDAENEELWKTISELQSKLEDANTELISEQEKV 74

Query: 107 EMVAAENAKLQYRQ*IPILVRTARETD*K 166
             +AAENAKLQYR  +  LVR   E D K
Sbjct: 75  RKLAAENAKLQYR--VLHLVRALHECDAK 101

Query: 167  226
           
Sbjct: 135  101

Query: 227  286
           
Sbjct: 195  101

Query: 287  314
           
Sbjct: 255  101

[Close]

BLAST of WMU28320 vs. TrEMBL
Match: A0A0B2S9Y2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048169 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.1e-14
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RASEAE+RLSRLE AL SKK   N+++LK I+ LQSKL+  N  LI E++KA+M+ 
Sbjct: 16  PFYQRASEAEERLSRLEAALNSKKGTGNEENLKVINDLQSKLEVANVELISEKEKAQMLV 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
           AENAKLQYR  I  L+R  +E D K
Sbjct: 76  AENAKLQYR--IIHLLRALKEADLK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

[Close]

BLAST of WMU28320 vs. TrEMBL
Match: C6T3Q4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G107400 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.1e-14
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RASEAE+RLSRLE AL SKK   N+++LK I+ LQSKL+  N  LI E++KA+M+ 
Sbjct: 16  PFYQRASEAEERLSRLEAALNSKKGTGNEENLKVINDLQSKLEVANVELISEKEKAQMLV 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
           AENAKLQYR  I  L+R  +E D K
Sbjct: 76  AENAKLQYR--IIHLLRALKEADLK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

[Close]

BLAST of WMU28320 vs. TrEMBL
Match: A9PB69_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04540g PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RASEAEDRLSRLE ++ S +D  +++HLKTIS LQ+KL+  N  L  ER+KA+ +A
Sbjct: 16  PFYQRASEAEDRLSRLEASVASNRDAGSEEHLKTISELQAKLEGANAELASEREKAKKLA 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
            EN KLQYR  +  LV+  RE D K
Sbjct: 76  VENGKLQYR--VIHLVQAIREGDAK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

[Close]

BLAST of WMU28320 vs. TrEMBL
Match: B9H9I5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04540g PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RASEAEDRLSRLE ++ S +D  +++HLKTIS LQ+KL+  N  L  ER+KA+ +A
Sbjct: 16  PFYQRASEAEDRLSRLEASVASNRDAGSEEHLKTISELQAKLEGANAELASEREKAKKLA 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
            EN KLQYR  +  LV+  RE D K
Sbjct: 76  VENGKLQYR--VIHLVQAIREGDAK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

[Close]

BLAST of WMU28320 vs. NCBI nr
Match: gi|659129281|ref|XP_008464609.1| (PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = 2


Query: 5   MAEPFGGVNYDP*ADLEAPSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKL 64
           MAEP GG N+D    L+ P  +RAS+AEDRLSRLE ALLSKKD HN++HLKTIS LQ+KL
Sbjct: 1   MAEPHGGGNHDLEQTLK-PFFQRASQAEDRLSRLEAALLSKKDDHNEEHLKTISELQTKL 60

Query: 65  DSTNEALIEERKKAEMVAAENAKLQYRQ*IPILVRTARET 124
           DS N ALIEERKKAEMVA ENAKLQYR  I  LVRTARET
Sbjct: 61  DSANNALIEERKKAEMVAEENAKLQYR--IIHLVRTARET 97

Query: 125  184
           
Sbjct: 121  97

Query: 185  244
           
Sbjct: 181  97

Query: 245  304
           
Sbjct: 241  97

[Close]

BLAST of WMU28320 vs. NCBI nr
Match: gi|659129279|ref|XP_008464608.1| (PREDICTED: uncharacterized protein LOC103502450 isoform X1 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.6e-17
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 2


Query: 5   MAEPFGGVNYDP*ADLEAPSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKL 64
           MAEP GG N+D    L+ P  +RAS+AEDRLSRLE ALLSKKD HN++HLKTIS LQ+KL
Sbjct: 1   MAEPHGGGNHDLEQTLK-PFFQRASQAEDRLSRLEAALLSKKDDHNEEHLKTISELQTKL 60

Query: 65  DSTNEALIEERKKAEMVAA 124
           DS N ALIEERKKA ++ A
Sbjct: 61  DSANNALIEERKKASIIGA 78

Query: 125  184
           
Sbjct: 121  78

Query: 185  242
           
Sbjct: 181  78

[Close]

BLAST of WMU28320 vs. NCBI nr
Match: gi|1009159888|ref|XP_015898059.1| (PREDICTED: uncharacterized protein LOC107431605 [Ziziphus jujuba])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RAS+AEDRLSRLE AL SKKD  N +HLKTI+ LQSKL+  +  LI ER++   +A
Sbjct: 16  PFYQRASQAEDRLSRLETALASKKDTGNVEHLKTINELQSKLEDAHAQLISEREEGRKLA 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
           AENAKLQYR  I  LVR  RE+D K
Sbjct: 76  AENAKLQYR--IHHLVRAVRESDQK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

[Close]

BLAST of WMU28320 vs. NCBI nr
Match: gi|802730501|ref|XP_012086217.1| (PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 52/89 (58.43%), Postives = 61/89 (68.54%), Query Frame = 2


Query: 47  DLEAPSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKA 106
           +L  P  +RASEAEDRLSRLE AL SKKD  N++  KTIS LQSKL+  N  LI E++K 
Sbjct: 15  ELLKPFYQRASEAEDRLSRLEVALASKKDAENEELWKTISELQSKLEDANTELISEQEKV 74

Query: 107 EMVAAENAKLQYRQ*IPILVRTARETD*K 166
             +AAENAKLQYR  +  LVR   E D K
Sbjct: 75  RKLAAENAKLQYR--VLHLVRALHECDAK 101

Query: 167  226
           
Sbjct: 135  101

Query: 227  286
           
Sbjct: 195  101

Query: 287  314
           
Sbjct: 255  101

[Close]

BLAST of WMU28320 vs. NCBI nr
Match: gi|351724963|ref|NP_001236820.1| (uncharacterized protein LOC100527237 [Glycine max])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 2


Query: 59  PSSKRASEAEDRLSRLEDALLSKKDVHNKDHLKTISGLQSKLDSTNEALIEERKKAEMVA 118
           P  +RASEAE+RLSRLE AL SKK   N+++LK I+ LQSKL+  N  LI E++KA+M+ 
Sbjct: 16  PFYQRASEAEERLSRLEAALNSKKGTGNEENLKVINDLQSKLEVANVELISEKEKAQMLV 75

Query: 119 AENAKLQYRQ*IPILVRTARETD*K 178
           AENAKLQYR  I  L+R  +E D K
Sbjct: 76  AENAKLQYR--IIHLLRALKEADLK 98

Query: 179  238
           
Sbjct: 136  98

Query: 239  298
           
Sbjct: 196  98

Query: 299  314
           
Sbjct: 256  98

The following BLAST results are available for this feature:

BLAST of WMU28320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57320.1	4.4e-07	39.53	unknown protein	[more]

BLAST of WMU28320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JTC8_JATCU	1.4e-14	58.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21121 PE=4 SV=1	[more]
A0A0B2S9Y2_GLYSO	7.1e-14	57.65	Uncharacterized protein OS=Glycine soja GN=glysoja_048169 PE=4 SV=1	[more]
C6T3Q4_SOYBN	7.1e-14	57.65	Uncharacterized protein OS=Glycine max GN=GLYMA_10G107400 PE=2 SV=1	[more]
A9PB69_POPTR	3.5e-13	54.12	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04540g PE=2 SV=1	[more]
B9H9I5_POPTR	3.5e-13	54.12	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04540g PE=4 SV=1	[more]

BLAST of WMU28320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129281\|ref\|XP_008464609.1\|	2.6e-25	74.00	PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo]	[more]
gi\|659129279\|ref\|XP_008464608.1\|	7.6e-17	68.35	PREDICTED: uncharacterized protein LOC103502450 isoform X1 [Cucumis melo]	[more]
gi\|1009159888\|ref\|XP_015898059.1\|	1.2e-14	61.18	PREDICTED: uncharacterized protein LOC107431605 [Ziziphus jujuba]	[more]
gi\|802730501\|ref\|XP_012086217.1\|	2.3e-13	58.43	PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]	[more]
gi\|351724963\|ref\|NP_001236820.1\|	1.1e-12	57.65	uncharacterized protein LOC100527237 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla006844	Cla006844	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0046556	S2_0046556	EST
S3_0094881	S3_0094881	EST
S3_0095590	S3_0095590	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 25..45 scor
None	No IPR available	PANTHER	PTHR38377	FAMILY NOT NAMED	coord: 6..88 score: 3.1
None	No IPR available	PANTHER	PTHR38377:SF1	SUBFAMILY NOT NAMED	coord: 6..88 score: 3.1