WMU17153 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU17153
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Receptor-type tyrosine-protein phosphatase U
Location	Chr5 : 11929469 .. 11929918 (+)
Sequence length	457

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGAGGAGGAGGAGGAGGAGGATGAGGAGGAAGATCTGAAAAGGGAGAGAACAAGGCGGCGGTAAAAGATGACGGGCGCGGCGGTGGTCGTGAGGTGGTGGAAGTCGTCGGAAATGAAGGGAAATGCGCCGGATTCGGTGAAATCGGTGTTTCAGAGACGAGAAAATTGAAGAAGGGTTGTGGATTGAGTAGGCGATTGGGAATGGTGGGGCTGCGAGTTTTTGGAATTGAGAGACATAGGCAGCAAAAAAGGGAAGAACAGAGAAGAGAGAGAGCATTCAGAAGGGGAGAAAAAACGAGGCTGAAAGAGAAGAAAAGATGAAGAACACAGAGTTCAAGAAGGAGAAAGTAATGAATGAAAAAGAAGAGCAATTGGATAAGAGAGAGGTGGAGATTGAAGAAAGAGAGCTGCAATGGAGGCAAAGGGAATTGAGAACAAGGATGAGAATGGAGAAGG

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 26d library	2

Homology

[Close]

BLAST of WMU17153 vs. TrEMBL
Match: A0A0A0LB45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = 1


Query: 244 AKKGRTEKRESIQKGRKNEAEREEKMKNTEFKKEKVMNEKEEQLDKREVXXXXXXXXXXX 303
           A K   ++RE   +  KNE EREEKMKN EFKKEK+MNEKEEQLD RE+           
Sbjct: 227 AAKREEQRRERAFRREKNEVEREEKMKNIEFKKEKLMNEKEEQLDNRELEIEERELQWRQ 286

Query: 304 XXXXXXMRMEK 363
                 MRME+
Sbjct: 287 REFENRMRMER 297

Query: 364  423
           
Sbjct: 347  297

Query: 424  457
           
Sbjct: 407  297

[Close]

BLAST of WMU17153 vs. TrEMBL
Match: A0A0A0LB45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 2


Query: 122 KCAGFGEIGVSETRKLKKGCGLSRRLGMVGLRV 181
           KC GFG+IGVSETRK KKG  ++RRLGMVG+RV
Sbjct: 188 KCCGFGQIGVSETRKSKKGSAMNRRLGMVGMRV 220

Query: 182  221
           
Sbjct: 248  220

The following BLAST results are available for this feature:

BLAST of WMU17153 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB45_CUCSA	1.3e-08	50.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1	[more]
A0A0A0LB45_CUCSA	4.0e-05	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1	[more]

BLAST of WMU17153 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013166	Cla013166	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0003141	S1_0003141	EST
S1_0003792	S1_0003792	EST
S3_0099645	S3_0099645	EST
S3_0137742	S3_0137742	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 76..86 score: -coord: 88..104 score: -coord: 107..138 scor