WMU17002 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU17002
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr3 : 17395786 .. 17396347 (-)
Sequence length	459

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTAAGAAAAAAGGCTCAAATGGCCATTATTTAGAGGTAATTAGATGCAGTATAGTACAGAAAGGCTCAAGTGGCCATTATTTCGTGGTAATTGGATGAAGCATATTACATACCTTTGTTTAGAACACTAATTGTTTAGAGGTAGTCGACTTTAACAATGCATGATCCGGAGGCAGTTATTTATTTAAAGGCGTGCATTAAAGAGACTTAGACATTCATGAGGGTGAATATTCCTTCATATACGGGACTAGTATCACTTCCTGTTATCACGGTCGATAGACATCCGTTCCAATTGTCTGATTTGCTAAGACCCGAATTGTATAATAATTTAGAGATGTAATTCCAATTATCATGCTTATCATAATGTCCCTCTTCACGTATCTCAGTATACGCCGTATTGTTCGAGGATGAATGATCCCACGGATTGGACCAAGCTGCCATCCAATCACAATGTACCTGC

Library


Library category	ESTs
watermelon fruit 26d library	1
watermelon fusarium SSH library	22

Homology

[Close]

BLAST of WMU17002 vs. Swiss-Prot
Match: JI23_HORVU (23 kDa jasmonate-induced protein OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-07
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = -2


Query: 225 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKL-LYNSGLSKSDNWNGCLS 284
           CDW+ +W+ P+      N  YTEIREEGHY    +W+YI  + L NS ++  D+  G +S
Sbjct: 134 CDWLFSWTVPY---IGGNGVYTEIREEGHYPSVGSWDYIYNVKLKNSSVTSIDSNYGYVS 193

Query: 285 TVITGSDTSPVYEGIF 344
               G  T+    G+F
Sbjct: 194 KADIGEGTTMNARGVF 206

Query: 345  404
           
Sbjct: 254  206

Query: 405  450
           
Sbjct: 314  206

[Close]

BLAST of WMU17002 vs. TrEMBL
Match: A0A097BU21_CITLA (23 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-30
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = -2


Query: 213 VHCDWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCL 272
           V CDWM AWSNPW+ SSS+NTAYTEIREEGHY K+D+WNYIS LLY+SGLS SD WN C+
Sbjct: 132 VVCDWMLAWSNPWNRSSSDNTAYTEIREEGHYTKNDHWNYISNLLYDSGLSSSDKWNKCV 191

Query: 273 STVITGSDTSPVYEGIFTLMN 332
           S V TGSDTSP++EGI TL +
Sbjct: 192 SNVTTGSDTSPIFEGILTLQD 212

Query: 333  392
           
Sbjct: 252  212

Query: 393  452
           
Sbjct: 312  212

Query: 453  456
           
Sbjct: 372  212

[Close]

BLAST of WMU17002 vs. TrEMBL
Match: A0A0A0M0F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = -2


Query: 219 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYD-KHDNWNYISKLLYNSGLSKSDNWNGCLS 278
           CDWM AWSNP+    ++N AYTEIRE+GHY+  HD W YI  LL  + LS  D WNGCLS
Sbjct: 134 CDWMVAWSNPYHRLFADNKAYTEIREQGHYEAPHDYWEYIFSLL--NDLSHRDKWNGCLS 193

Query: 279 TVITGSDTSPVYEGIFTL 338
            V TGSDT+P+  GIFTL
Sbjct: 194 NVSTGSDTNPLCVGIFTL 209

Query: 339  398
           
Sbjct: 254  209

Query: 399  450
           
Sbjct: 314  209

[Close]

BLAST of WMU17002 vs. TrEMBL
Match: A0A0D2UTY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G141300 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-11
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = -2


Query: 219 DWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCLSTV 278
           DW+ AW NPW+     N AY EI + GHYD+ D W  + + + ++G      W GC++ V
Sbjct: 177 DWLVAWDNPWNTLRFTNQAYAEINQAGHYDRID-WEALGRTISSAGRQHRAAWRGCVAQV 236

Query: 279 ITGSDTSPVYEGIFTL 338
            T  DTSP++EG+ +L
Sbjct: 237 QTEIDTSPLWEGVLSL 251

Query: 339  398
           
Sbjct: 297  251

Query: 399  447
           
Sbjct: 357  251

[Close]

BLAST of WMU17002 vs. TrEMBL
Match: M0T1C5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = -2


Query: 222 DWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCLSTV 281
           D +  W NPW+ +S +N AY EI + G+YD  D W  I+    N+G      W GC+STV
Sbjct: 152 DSLLFWDNPWNKASYSNKAYAEINQAGYYDNID-WGVIASKGSNAGPQHRAAWKGCVSTV 211

Query: 282 ITGSDTSPVYEGIFT 341
           +  S T+  +E   T
Sbjct: 212 VIESGTTAKFEATLT 225

Query: 342  401
           
Sbjct: 272  225

Query: 402  447
           
Sbjct: 332  225

[Close]

BLAST of WMU17002 vs. TrEMBL
Match: M0T1C4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = -2


Query: 222 DWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCLSTV 281
           D +  W NPW+ +S +N AY EI + G+YD  D W  I+    N+G      W GC+STV
Sbjct: 152 DSLLFWDNPWNKASYSNQAYAEINQAGYYDNID-WGVIAGKGSNAGPQYRAAWKGCVSTV 211

Query: 282 ITGSDTSPVYEGIFT 341
           +  S T+  +E   T
Sbjct: 212 VIESGTTAKFEATLT 225

Query: 342  401
           
Sbjct: 272  225

Query: 402  447
           
Sbjct: 332  225

[Close]

BLAST of WMU17002 vs. NCBI nr
Match: gi|694188379|gb|AIS71930.1| (23 kDa jasmonate-induced protein [Citrullus lanatus])

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = -2


Query: 213 VHCDWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCL 272
           V CDWM AWSNPW+ SSS+NTAYTEIREEGHY K+D+WNYIS LLY+SGLS SD WN C+
Sbjct: 132 VVCDWMLAWSNPWNRSSSDNTAYTEIREEGHYTKNDHWNYISNLLYDSGLSSSDKWNKCV 191

Query: 273 STVITGSDTSPVYEGIFTLMN 332
           S V TGSDTSP++EGI TL +
Sbjct: 192 SNVTTGSDTSPIFEGILTLQD 212

Query: 333  392
           
Sbjct: 252  212

Query: 393  452
           
Sbjct: 312  212

Query: 453  456
           
Sbjct: 372  212

[Close]

BLAST of WMU17002 vs. NCBI nr
Match: gi|659086035|ref|XP_008443732.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = -2


Query: 213 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCLST 272
           CDWM AWSNP+    ++NTAYTEIRE+GHY+ HD+W YI  LL NS L  SD WN C S 
Sbjct: 134 CDWMVAWSNPYYRLFADNTAYTEIREKGHYEAHDHWEYIFDLLNNSSLIHSDEWNKCQSK 193

Query: 273 VITGSDTSPVYEGIFTLMN 332
           V TG+DT+P++EGI TL N
Sbjct: 194 VSTGNDTNPIFEGILTLSN 212

Query: 333  392
           
Sbjct: 254  212

Query: 393  450
           
Sbjct: 314  212

[Close]

BLAST of WMU17002 vs. NCBI nr
Match: gi|743780066|ref|XP_010920410.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Elaeis guineensis])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = -2


Query: 213 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYDKHDNWNYISKLLYNSGLSKSDNWNGCLST 272
           CDWM  WSNPW+   ++NT YTEIRE  HY+ +++WNYI   +  SGL+ SD WNGC+ST
Sbjct: 135 CDWMFGWSNPWNRWGNDNTVYTEIREYRHYEDNNHWNYIQDKVEGSGLTHSDTWNGCVST 194

Query: 273 VITGSDTSPVYEGIFTLMN 332
           V TGS TSP+ + I TL N
Sbjct: 195 VATGSSTSPILQAILTLEN 213

Query: 333  392
           
Sbjct: 255  213

Query: 393  450
           
Sbjct: 315  213

[Close]

BLAST of WMU17002 vs. NCBI nr
Match: gi|700211516|gb|KGN66612.1| (hypothetical protein Csa_1G642550 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = -2


Query: 219 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYD-KHDNWNYISKLLYNSGLSKSDNWNGCLS 278
           CDWM AWSNP+    ++N AYTEIRE+GHY+  HD W YI  LL  + LS  D WNGCLS
Sbjct: 134 CDWMVAWSNPYHRLFADNKAYTEIREQGHYEAPHDYWEYIFSLL--NDLSHRDKWNGCLS 193

Query: 279 TVITGSDTSPVYEGIFTL 338
            V TGSDT+P+  GIFTL
Sbjct: 194 NVSTGSDTNPLCVGIFTL 209

Query: 339  398
           
Sbjct: 254  209

Query: 399  450
           
Sbjct: 314  209

[Close]

BLAST of WMU17002 vs. NCBI nr
Match: gi|778663970|ref|XP_004139150.2| (PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = -2


Query: 219 CDWMAAWSNPWDHSSSNNTAYTEIREEGHYD-KHDNWNYISKLLYNSGLSKSDNWNGCLS 278
           CDWM AWSNP+    ++N AYTEIRE+GHY+  HD W YI  LL  + LS  D WNGCLS
Sbjct: 97  CDWMVAWSNPYHRLFADNKAYTEIREQGHYEAPHDYWEYIFSLL--NDLSHRDKWNGCLS 156

Query: 279 TVITGSDTSPVYEGIFTL 338
            V TGSDT+P+  GIFTL
Sbjct: 157 NVSTGSDTNPLCVGIFTL 172

Query: 339  398
           
Sbjct: 217  172

Query: 399  450
           
Sbjct: 277  172

The following BLAST results are available for this feature:

BLAST of WMU17002 vs. Swiss-Prot


Match Name	E-value	Identity	Description
JI23_HORVU	6.1e-07	38.16	23 kDa jasmonate-induced protein OS=Hordeum vulgare PE=2 SV=1	[more]

BLAST of WMU17002 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A097BU21_CITLA	6.1e-30	74.07	23 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1	[more]
A0A0A0M0F4_CUCSA	1.1e-18	61.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1	[more]
A0A0D2UTY4_GOSRA	8.2e-11	40.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G141300 PE=4 SV=1	[more]
M0T1C5_MUSAM	9.4e-07	38.67	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
M0T1C4_MUSAM	2.1e-06	38.67	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of WMU17002 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|694188379\|gb\|AIS71930.1\|	7.4e-29	74.07	23 kDa jasmonate-induced protein [Citrullus lanatus]	[more]
gi\|659086035\|ref\|XP_008443732.1\|	3.3e-21	62.03	PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo]	[more]
gi\|743780066\|ref\|XP_010920410.1\|	1.1e-19	56.96	PREDICTED: 23 kDa jasmonate-induced protein-like [Elaeis guineensis]	[more]
gi\|700211516\|gb\|KGN66612.1\|	1.7e-17	61.54	hypothetical protein Csa_1G642550 [Cucumis sativus]	[more]
gi\|778663970\|ref\|XP_004139150.2\|	1.7e-17	61.54	PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002541	Cla002541	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0026168	S3_0026168	EST
SSH0000024	SSH0000024	EST
SSH0000083	SSH0000083	EST
SSH0000489	SSH0000489	EST
SSH0000585	SSH0000585	EST
SSH0000597	SSH0000597	EST
SSH0000644	SSH0000644	EST
SSH0000928	SSH0000928	EST
SSH0001056	SSH0001056	EST
SSH0001116	SSH0001116	EST
SSH0001693	SSH0001693	EST
SSH0001741	SSH0001741	EST
SSH0001742	SSH0001742	EST
SSH0001746	SSH0001746	EST
SSH0002000	SSH0002000	EST
SSH0002104	SSH0002104	EST
SSH0002111	SSH0002111	EST
SSH0002373	SSH0002373	EST
SSH0002419	SSH0002419	EST
SSH0002433	SSH0002433	EST
SSH0002709	SSH0002709	EST
SSH0003428	SSH0003428	EST
SSH0003746	SSH0003746	EST