WMU16166 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU16166
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	23 kDa jasmonate-induced protein
Location	Chr3 : 17395017 .. 17395788 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTAATTTCAGGAGAAAAAAGATTCGAGGATGGCATACAATGTATTTGGCAATCCAATCACCAACCAAACATTGGAGGCTATGCCTGAGTATGCAGGGAAGCAAATAACACGTCGAGATAGAGCACATGTGGCACTTAATATGAAGAATGCTCAAGACAAAGACAAAAATGCTCGAGAATATGTAGAAAATTTGAAAAAACAATGGGGAACTGGAGTCTCTACCCTTTGCTTACTTTACAATGCCACTGGTGATACCATAACATATGTTTGTGATCACGATTGGCATGGTCATATTGGACCTGGTCCTTACCCAATCCAAATAGCAAATGGTCAATGGGGCGGTTTTCTTCATGTTAAAACCTCTGGTGCTGCCACGGGCTCTTCTGCTGCTGTAGTATATCGTGGTCTGAATCCTGATGATGT

Library


Library category	ESTs
watermelon fusarium SSH library	9

Homology

[Close]

BLAST of WMU16166 vs. Swiss-Prot
Match: JI23_HORVU (23 kDa jasmonate-induced protein OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-27
Identity = 63/129 (48.84%), Postives = 79/129 (61.24%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MA  VFG PI+ QT+ A  EY  + IT++D A  A+ M NA  KD NA+++V+NLK+++G
Sbjct: 1   MASGVFGTPISAQTVIATGEYK-EPITQKDVADYAMKMINAGGKDVNAQKFVDNLKERYG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
            G++  CLLYNATG T+ +   +DWHGHI   PYP  I NGQWG FLHV           
Sbjct: 61  NGIAVKCLLYNATGATLNFAKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHPSGAAAGSAG 120

Query: 149 XVVYRGLNP 208
            VVYR   P
Sbjct: 121 AVVYRSKIP 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  416
           
Sbjct: 361  128

[Close]

BLAST of WMU16166 vs. TrEMBL
Match: A0A097BU21_CITLA (23 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-55
Identity = 103/130 (79.23%), Postives = 111/130 (85.38%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MAYNVFGNPITN+TL AMP+Y GK+ITRRDRAHVALNMKNAQDKDKNAREYVE LK+QWG
Sbjct: 1   MAYNVFGNPITNETLAAMPDYEGKKITRRDRAHVALNMKNAQDKDKNAREYVERLKQQWG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
           TGVSTLCL+YNATGDTI +V +H WHGHIGPGPYPI+IANGQWGGFLHVK          
Sbjct: 61  TGVSTLCLIYNATGDTIKFVVEHSWHGHIGPGPYPIEIANGQWGGFLHVKTSGTATGSSA 120

Query: 149 XVVYRGLNPD 208
             VYRGLN D
Sbjct: 121 ACVYRGLNND 130

Query: 209  268
           
Sbjct: 181  130

Query: 269  328
           
Sbjct: 241  130

Query: 329  388
           
Sbjct: 301  130

Query: 389  419
           
Sbjct: 361  130

[Close]

BLAST of WMU16166 vs. TrEMBL
Match: A0A0A0M0F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MA NVFGNPITN TL+AMP+Y GK ITRRDRA+VALNMKNAQ KDK+A++YVE L+++WG
Sbjct: 1   MADNVFGNPITNSTLQAMPDYEGKVITRRDRAYVALNMKNAQGKDKDAQDYVEKLREEWG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
           +GV+TLCL+YNATGDTI +VC++ WHGHIGP PYP +I NGQWG FLHVK          
Sbjct: 61  SGVATLCLIYNATGDTIKFVCEYSWHGHIGPSPYPSEIENGQWGAFLHVKTAVVPSGSAA 120

Query: 149 XVVYRGLN 208
             VYRG N
Sbjct: 121 SCVYRGQN 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  413
           
Sbjct: 361  128

[Close]

BLAST of WMU16166 vs. TrEMBL
Match: M5X699_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020548mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.3e-38
Identity = 82/130 (63.08%), Postives = 88/130 (67.69%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MAYNVFGNPI N TL+ MPEY  K I R DRA VAL MKN  DKD  A  +VENLKKQ G
Sbjct: 1   MAYNVFGNPIQNSTLKGMPEYKLKAIERNDRAKVALQMKNVGDKDLKALTFVENLKKQHG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
            G+STLCL+YNATGDT+TY    DW GHIG  PYP  IANGQWG FLHV+          
Sbjct: 61  DGISTLCLIYNATGDTLTYSISKDWCGHIGHFPYPTLIANGQWGAFLHVQKLGTPEGSVA 120

Query: 149 XVVYRGLNPD 208
            VVY G N D
Sbjct: 121 TVVYNGKNKD 130

Query: 209  268
           
Sbjct: 181  130

Query: 269  328
           
Sbjct: 241  130

Query: 329  388
           
Sbjct: 301  130

Query: 389  419
           
Sbjct: 361  130

[Close]

BLAST of WMU16166 vs. TrEMBL
Match: A0A0D3HL17_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.8e-32
Identity = 63/108 (58.33%), Postives = 87/108 (80.56%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MA NVFG PIT++TL+A+PEY  KQI+++DRA+VA++MKNA+ KD NAR++VE+L++ + 
Sbjct: 1   MASNVFGTPITDETLKALPEYHNKQISQKDRAYVAMDMKNAEGKDVNARKFVEDLREHFH 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLH 148
              +TLCL+YNATGD + YV D+ W GH+   PYP+ I+NGQWG FLH
Sbjct: 61  EEQATLCLIYNATGDPVIYVRDYQWQGHLCGSPYPVVISNGQWGAFLH 108

Query: 149  208
           
Sbjct: 121  108

Query: 209  268
           
Sbjct: 181  108

Query: 269  328
           
Sbjct: 241  108

Query: 329  353
           
Sbjct: 301  108

[Close]

BLAST of WMU16166 vs. TrEMBL
Match: A0A0K9RLY7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_056860 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-30
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQ-ITRRDRAHVALNMKNAQDKDKNAREYVENLKKQW 88
           M  NVFG PITN TL AMPEY+ K+ IT  DR+ +AL MKNA+ KD NAR ++E+L+ ++
Sbjct: 1   MGSNVFGTPITNHTLRAMPEYSDKKSITANDRSILALEMKNAEGKDINARNFLESLQARF 60

Query: 89  GTGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXX 148
           G  VST+C++YNATG ++T+V  H+W G +   PYP+ I NGQWG FLH +         
Sbjct: 61  GENVSTMCMIYNATGGSLTFVDAHNWTGRVCESPYPMVILNGQWGVFLHGRYGHEEAGSE 120

Query: 149 XXVVYRGLNPD 208
             VVY G+N D
Sbjct: 121 AAVVYHGINYD 131

Query: 209  268
           
Sbjct: 181  131

Query: 269  328
           
Sbjct: 241  131

Query: 329  388
           
Sbjct: 301  131

Query: 389  419
           
Sbjct: 361  131

[Close]

BLAST of WMU16166 vs. NCBI nr
Match: gi|694188379|gb|AIS71930.1| (23 kDa jasmonate-induced protein [Citrullus lanatus])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 103/130 (79.23%), Postives = 111/130 (85.38%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MAYNVFGNPITN+TL AMP+Y GK+ITRRDRAHVALNMKNAQDKDKNAREYVE LK+QWG
Sbjct: 1   MAYNVFGNPITNETLAAMPDYEGKKITRRDRAHVALNMKNAQDKDKNAREYVERLKQQWG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
           TGVSTLCL+YNATGDTI +V +H WHGHIGPGPYPI+IANGQWGGFLHVK          
Sbjct: 61  TGVSTLCLIYNATGDTIKFVVEHSWHGHIGPGPYPIEIANGQWGGFLHVKTSGTATGSSA 120

Query: 149 XVVYRGLNPD 208
             VYRGLN D
Sbjct: 121 ACVYRGLNND 130

Query: 209  268
           
Sbjct: 181  130

Query: 269  328
           
Sbjct: 241  130

Query: 329  388
           
Sbjct: 301  130

Query: 389  419
           
Sbjct: 361  130

[Close]

BLAST of WMU16166 vs. NCBI nr
Match: gi|659086035|ref|XP_008443732.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 90/128 (70.31%), Postives = 105/128 (82.03%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MA NVFGNPITN TL+AMPEY GK ITRRDRA+VA NMKNAQ+KD++AR++VE L+++WG
Sbjct: 1   MADNVFGNPITNSTLQAMPEYEGKTITRRDRAYVAFNMKNAQNKDRSARDHVEKLREEWG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
            GV+TLCL+YNATGDTIT+VC+H WHGHIG GPYP +IANGQWG FLHVK          
Sbjct: 61  HGVATLCLIYNATGDTITFVCEHSWHGHIGSGPYPSEIANGQWGAFLHVKTAVVPSGSAG 120

Query: 149 XVVYRGLN 208
             VYRGLN
Sbjct: 121 ACVYRGLN 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  413
           
Sbjct: 361  128

[Close]

BLAST of WMU16166 vs. NCBI nr
Match: gi|700211516|gb|KGN66612.1| (hypothetical protein Csa_1G642550 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           MA NVFGNPITN TL+AMP+Y GK ITRRDRA+VALNMKNAQ KDK+A++YVE L+++WG
Sbjct: 1   MADNVFGNPITNSTLQAMPDYEGKVITRRDRAYVALNMKNAQGKDKDAQDYVEKLREEWG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
           +GV+TLCL+YNATGDTI +VC++ WHGHIGP PYP +I NGQWG FLHVK          
Sbjct: 61  SGVATLCLIYNATGDTIKFVCEYSWHGHIGPSPYPSEIENGQWGAFLHVKTAVVPSGSAA 120

Query: 149 XVVYRGLN 208
             VYRG N
Sbjct: 121 SCVYRGQN 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  413
           
Sbjct: 361  128

[Close]

BLAST of WMU16166 vs. NCBI nr
Match: gi|658025946|ref|XP_008348390.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           M YNVFGNPIT++TL+ MPEYA KQI R DRAHVALNMKNA +KD NAR YVE LK+Q+G
Sbjct: 1   MTYNVFGNPITDETLKGMPEYADKQIERLDRAHVALNMKNAXEKDFNARTYVEKLKEQYG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
            GVSTLCL+YNATGDTI+Y    DW+GHIG  PYP  IANGQWG FLHVK          
Sbjct: 61  DGVSTLCLVYNATGDTISYANKKDWYGHIGKAPYPPLIANGQWGAFLHVKTAGASSGSTA 120

Query: 149 XVVYRGLN 208
            VVY+GLN
Sbjct: 121 AVVYQGLN 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  413
           
Sbjct: 361  128

[Close]

BLAST of WMU16166 vs. NCBI nr
Match: gi|657969212|ref|XP_008376321.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica])

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 2


Query: 29  MAYNVFGNPITNQTLEAMPEYAGKQITRRDRAHVALNMKNAQDKDKNAREYVENLKKQWG 88
           M YNVFGNPIT++TL+ MPEYA KQI R DRAHVALNMKNA +KD NAR YVE LK+Q+G
Sbjct: 1   MXYNVFGNPITDETLKGMPEYADKQIERLDRAHVALNMKNAXEKDFNARTYVEKLKEQYG 60

Query: 89  TGVSTLCLLYNATGDTITYVCDHDWHGHIGPGPYPIQIANGQWGGFLHVKXXXXXXXXXX 148
            GVSTLCL+YNATGDTI+Y    DW+GHIG  PYP  IANGQWG FLHVK          
Sbjct: 61  DGVSTLCLVYNATGDTISYANKKDWYGHIGXAPYPPLIANGQWGAFLHVKTAGASSGSTA 120

Query: 149 XVVYRGLN 208
            VVY+GLN
Sbjct: 121 AVVYQGLN 128

Query: 209  268
           
Sbjct: 181  128

Query: 269  328
           
Sbjct: 241  128

Query: 329  388
           
Sbjct: 301  128

Query: 389  413
           
Sbjct: 361  128

The following BLAST results are available for this feature:

BLAST of WMU16166 vs. Swiss-Prot


Match Name	E-value	Identity	Description
JI23_HORVU	1.7e-27	48.84	23 kDa jasmonate-induced protein OS=Hordeum vulgare PE=2 SV=1	[more]

BLAST of WMU16166 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A097BU21_CITLA	1.0e-55	79.23	23 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1	[more]
A0A0A0M0F4_CUCSA	1.5e-46	67.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1	[more]
M5X699_PRUPE	4.3e-38	63.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020548mg PE=4 SV=1	[more]
A0A0D3HL17_9ORYZ	7.8e-32	58.33	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
A0A0K9RLY7_SPIOL	4.3e-30	51.15	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_056860 PE=4 SV=1	[more]

BLAST of WMU16166 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|694188379\|gb\|AIS71930.1\|	1.1e-55	79.23	23 kDa jasmonate-induced protein [Citrullus lanatus]	[more]
gi\|659086035\|ref\|XP_008443732.1\|	2.2e-48	70.31	PREDICTED: 23 kDa jasmonate-induced protein-like [Cucumis melo]	[more]
gi\|700211516\|gb\|KGN66612.1\|	1.6e-46	67.97	hypothetical protein Csa_1G642550 [Cucumis sativus]	[more]
gi\|658025946\|ref\|XP_008348390.1\|	1.7e-43	68.75	PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica]	[more]
gi\|657969212\|ref\|XP_008376321.1\|	2.2e-43	68.75	PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002541	Cla002541	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
SSH0000199	SSH0000199	EST
SSH0000225	SSH0000225	EST
SSH0000263	SSH0000263	EST
SSH0001492	SSH0001492	EST
SSH0002253	SSH0002253	EST
SSH0002282	SSH0002282	EST
SSH0002478	SSH0002478	EST
SSH0002622	SSH0002622	EST
SSH0003846	SSH0003846	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 38..58 scor
None	No IPR available	PANTHER	PTHR36482	FAMILY NOT NAMED	coord: 2..125 score: 2.6
None	No IPR available	PANTHER	PTHR36482:SF2	SUBFAMILY NOT NAMED	coord: 2..125 score: 2.6