WMU14998 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU14998
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 4752907 .. 4753573 (-)
Sequence length	667

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTAACATGAATTACAAAGCAGTCTCTTCCAATAGAAGCCATTGGATTTTCTTAAAAGTTACAAGGTTTACATCTCAAGTAGAAAACCAAAATAGTCATAATTGAAGCCTCAACCGCTCAGCTAAAGAAATCCTGAACCCCTTTTCCGGCGAAAACTCGGTCGGACAACTCTGCCAATAAGGCATTCACAGTGAGCAAAACGACACTAGAGCCAGCAATAACTCCGATCACTACCCCCGTCGTGCCCAAAACCTTACGGAACGCCGGCCACTCAATCTCCCTAATCTCCTCCGCCACTCCGCCGATCAGGCCCCCTTCTTTCTCCACCTTCCGCTGCTTCAAAGCCTCCTGAATTTCGGCGCCCAAAATTCGCGCCGGATTCTGCCGATTGGTCGGTCGTTTTCGGCTCCTCCGTCGGTGGCCCTGCTTGAACTCCCACCCCGTCGGATTCTGTATTCTCTTGGCTTTCCTGCACGGCATTGACGGCGGAGAACTTAATGTTCCTTCTGGACCTAATCGTCGGGAGTCTGATCGTGTGTTGTGAATGAGGATGAGAATGATGAGCGGAGCTCCGCCGTAGTGGTACGAACCAGGAGGCGGCTCTGTTGGTTAAAGCGGATGGTACCGTCGGAAATTTCAGGGAGATCGGAACGGCCATATTCCCTGTC

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU14998 vs. TAIR10
Match: AT4G14870.1 (AT4G14870.1 secE/sec61-gamma protein transport protein)

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-16
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = -3


Query: 120 LGAEIQEALKQRKV-EKEGG---LIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXX 179
           +GAEI+ A++QRK  E+E G    + GVAEE++EIEWPAF+K                  
Sbjct: 92  IGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVV 151

Query: 180 XLTVNALLAELSDRVFAGKGVQDFFS 239
            LTVN LLAELSDRVF G+GVQDFFS
Sbjct: 152 LLTVNFLLAELSDRVFIGRGVQDFFS 177

Query: 240  299
           
Sbjct: 212  177

Query: 300  359
           
Sbjct: 272  177

Query: 360  366
           
Sbjct: 332  177

[Close]

BLAST of WMU14998 vs. Swiss-Prot
Match: SECE1_ARATH (Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = -3


Query: 120 LGAEIQEALKQRKV-EKEGG---LIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXX 179
           +GAEI+ A++QRK  E+E G    + GVAEE++EIEWPAF+K                  
Sbjct: 92  IGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVV 151

Query: 180 XLTVNALLAELSDRVFAGKGVQDFFS 239
            LTVN LLAELSDRVF G+GVQDFFS
Sbjct: 152 LLTVNFLLAELSDRVFIGRGVQDFFS 177

Query: 240  299
           
Sbjct: 212  177

Query: 300  359
           
Sbjct: 272  177

Query: 360  366
           
Sbjct: 332  177

[Close]

BLAST of WMU14998 vs. TrEMBL
Match: A0A0A0L5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146680 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-33
Identity = 78/99 (78.79%), Postives = 79/99 (79.80%), Query Frame = -2


Query: 361 MAVPISLKFPTVPSALTNRAASWFVPLRRXXXXXXXXXXXXTIRLPTIRSRRNIKFSAVN 420
           MAVPISLKFPTVPS LTNR AS FVPLRR            TIR PTIRS RN+KFSAVN
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLRRSSPHHSHPHSQHTIRFPTIRSNRNVKFSAVN 60

Query: 421 AVQESQENTESDGVGVQAGPPTEEPKTTDQSAESGANFG 480
           AVQESQENTESDGV VQAGPPTEEPKT DQSAESGAN G
Sbjct: 61  AVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLG 99

Query: 481  540
           
Sbjct: 121  99

Query: 541  600
           
Sbjct: 181  99

Query: 601  658
           
Sbjct: 241  99

[Close]

BLAST of WMU14998 vs. TrEMBL
Match: A0A0A0L5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146680 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 64/107 (59.81%), Postives = 67/107 (62.62%), Query Frame = -3


Query: 120 GWEFKQGHRRRSRKRPTNRQNPARILGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPA 179
           G E + G      K           LGAEIQEALKQ+KVEKEG LIGGVAEEI+EIEWPA
Sbjct: 73  GVEVQAGPPTEEPKTADQSAESGANLGAEIQEALKQQKVEKEGDLIGGVAEEIKEIEWPA 132

Query: 180 FRKXXXXXXXXXXXXXXXXXXXLTVNALLAELSDRVFAGKGVQDFFS 239
           FRK                   LTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 133 FRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

Query: 240  299
           
Sbjct: 193  179

Query: 300  359
           
Sbjct: 253  179

Query: 360  419
           
Sbjct: 313  179

Query: 420  441
           
Sbjct: 373  179

HSP 2 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = -3


Query: 120 LGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLTV 179
           LG EI+EA+++RK EK+G  + GVA+E+REIEWPAF K                   LTV
Sbjct: 100 LGKEIKEAMQKRKEEKDGDFLSGVADEVREIEWPAFAKVLGTTGVVLGVIAGSSVVLLTV 159

Query: 180 NALLAELSDRVFAGKGVQDFFS 239
           NA+LAE SD+VFAGKGVQDFFS
Sbjct: 160 NAVLAEFSDQVFAGKGVQDFFS 181

Query: 240  299
           
Sbjct: 220  181

Query: 300  359
           
Sbjct: 280  181

Query: 360  366
           
Sbjct: 340  181

[Close]

BLAST of WMU14998 vs. TrEMBL
Match: A0A0D2S1G1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G239600 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.0e-15
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -3


Query: 120 TNRQNPARILGAEIQEALKQRKVEK-EGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXX 179
           ++ ++    +GAEI++A+K+R+    +  L GGVAEEIREIEWPAF K            
Sbjct: 83  SSEESELSAIGAEIKKAMKEREANNSDNSLAGGVAEEIREIEWPAFGKVLGTTSVVLGVI 142

Query: 180 XXXXXXXLTVNALLAELSDRVFAGKGVQDFFS 239
                  LTVNA+LAELSDRVFAGKGVQDFFS
Sbjct: 143 AGSSVVLLTVNAVLAELSDRVFAGKGVQDFFS 174

Query: 240  299
           
Sbjct: 203  174

Query: 300  359
           
Sbjct: 263  174

Query: 360  393
           
Sbjct: 323  174

[Close]

BLAST of WMU14998 vs. TrEMBL
Match: B9HJY6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15330g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = -3


Query: 120 LGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLTV 179
           LGAEI++A+ +RK ++EG    GVAEEI+EIEWPAF K                   LTV
Sbjct: 91  LGAEIKKAMMERKSKEEGNFWSGVAEEIQEIEWPAFGKVLGTTGVVIGVIVGSSVVLLTV 150

Query: 180 NALLAELSDRVFAGKGVQDFFS 239
           NA+LAELSDRVFAG+G+QDFFS
Sbjct: 151 NAVLAELSDRVFAGRGLQDFFS 172

Query: 240  299
           
Sbjct: 211  172

Query: 300  359
           
Sbjct: 271  172

Query: 360  366
           
Sbjct: 331  172

[Close]

BLAST of WMU14998 vs. TrEMBL
Match: A0A067L6Q9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02178 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = -3


Query: 123 LGAEIQEA-LKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLT 182
           LGAEI++A L+++K EK+G L+ GVAEE++EIEWPAF K                   LT
Sbjct: 89  LGAEIKKAMLERKKEEKQGDLLSGVAEEVQEIEWPAFGKVLGTTGVVLGVIAGSSVVLLT 148

Query: 183 VNALLAELSDRVFAGKGVQDFF 242
           VNA+LAELSDR+FAG+GVQDFF
Sbjct: 149 VNAVLAELSDRIFAGRGVQDFF 170

Query: 243  302
           
Sbjct: 209  170

Query: 303  362
           
Sbjct: 269  170

Query: 363  366
           
Sbjct: 329  170

[Close]

BLAST of WMU14998 vs. NCBI nr
Match: gi|449432698|ref|XP_004134136.1| (PREDICTED: preprotein translocase subunit SECE1 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 78/99 (78.79%), Postives = 79/99 (79.80%), Query Frame = -2


Query: 361 MAVPISLKFPTVPSALTNRAASWFVPLRRXXXXXXXXXXXXTIRLPTIRSRRNIKFSAVN 420
           MAVPISLKFPTVPS LTNR AS FVPLRR            TIR PTIRS RN+KFSAVN
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLRRSSPHHSHPHSQHTIRFPTIRSNRNVKFSAVN 60

Query: 421 AVQESQENTESDGVGVQAGPPTEEPKTTDQSAESGANFG 480
           AVQESQENTESDGV VQAGPPTEEPKT DQSAESGAN G
Sbjct: 61  AVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLG 99

Query: 481  540
           
Sbjct: 121  99

Query: 541  600
           
Sbjct: 181  99

Query: 601  658
           
Sbjct: 241  99

[Close]

BLAST of WMU14998 vs. NCBI nr
Match: gi|659076435|ref|XP_008438678.1| (PREDICTED: preprotein translocase subunit SECE1 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 79/100 (79.00%), Postives = 80/100 (80.00%), Query Frame = -2


Query: 361 MAVPISLKFPTVPSALTNRAASWFVPL-RRXXXXXXXXXXXXTIRLPTIRSRRNIKFSAV 420
           MAVPISLKFPTVPS LTNR AS FVPL R+            TIRLPTIRS RNIKFSAV
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLLRQSSTHHSHPHSQHTIRLPTIRSNRNIKFSAV 60

Query: 421 NAVQESQENTESDGVGVQAGPPTEEPKTTDQSAESGANFG 480
           NAVQESQENTESDGV VQAGPPTEEPKT DQSAESGAN G
Sbjct: 61  NAVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLG 100

Query: 481  540
           
Sbjct: 121  100

Query: 541  600
           
Sbjct: 181  100

Query: 601  658
           
Sbjct: 241  100

[Close]

BLAST of WMU14998 vs. NCBI nr
Match: gi|747051014|ref|XP_011071590.1| (PREDICTED: preprotein translocase subunit SECE1 [Sesamum indicum])

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = -3


Query: 123 LGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLTV 182
           LG EI++A+K+++ +KEGGL+GGVAEEIREIEWPAF K                   LTV
Sbjct: 85  LGMEIKKAMKEKEEQKEGGLLGGVAEEIREIEWPAFNKVLGTTGVVLGVIAGSSVVLLTV 144

Query: 183 NALLAELSDRVFAGKGVQDFF 242
           NA+LAE+SDRVFAG+GVQDFF
Sbjct: 145 NAVLAEISDRVFAGRGVQDFF 165

Query: 243  302
           
Sbjct: 205  165

Query: 303  362
           
Sbjct: 265  165

Query: 363  366
           
Sbjct: 325  165

[Close]

BLAST of WMU14998 vs. NCBI nr
Match: gi|645235523|ref|XP_008224311.1| (PREDICTED: preprotein translocase subunit SECE1 [Prunus mume])

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = -3


Query: 120 LGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLTV 179
           LG EI+EA+++RK EKEG  + GVA+E+REIEWPAF K                   LTV
Sbjct: 108 LGKEIKEAMQKRKEEKEGDFLSGVADEVREIEWPAFAKVLGTTGVVLGVIAGSSVVLLTV 167

Query: 180 NALLAELSDRVFAGKGVQDFFS 239
           NA+LAE SDRVFAGKGVQDFFS
Sbjct: 168 NAVLAEFSDRVFAGKGVQDFFS 189

Query: 240  299
           
Sbjct: 228  189

Query: 300  359
           
Sbjct: 288  189

Query: 360  366
           
Sbjct: 348  189

[Close]

BLAST of WMU14998 vs. NCBI nr
Match: gi|596288401|ref|XP_007225931.1| (hypothetical protein PRUPE_ppa012169mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = -3


Query: 120 LGAEIQEALKQRKVEKEGGLIGGVAEEIREIEWPAFRKXXXXXXXXXXXXXXXXXXXLTV 179
           LG EI+EA+++RK EK+G  + GVA+E+REIEWPAF K                   LTV
Sbjct: 100 LGKEIKEAMQKRKEEKDGDFLSGVADEVREIEWPAFAKVLGTTGVVLGVIAGSSVVLLTV 159

Query: 180 NALLAELSDRVFAGKGVQDFFS 239
           NA+LAE SD+VFAGKGVQDFFS
Sbjct: 160 NAVLAEFSDQVFAGKGVQDFFS 181

Query: 240  299
           
Sbjct: 220  181

Query: 300  359
           
Sbjct: 280  181

Query: 360  366
           
Sbjct: 340  181

The following BLAST results are available for this feature:

BLAST of WMU14998 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14870.1	8.5e-16	53.49	secE/sec61-gamma protein transport protein	[more]

BLAST of WMU14998 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SECE1_ARATH	1.5e-14	53.49	Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1	[more]

BLAST of WMU14998 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5J0_CUCSA	2.9e-33	78.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146680 PE=4 SV=1	[more]
A0A0A0L5J0_CUCSA	6.8e-22	59.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146680 PE=4 SV=1	[more]
A0A0D2S1G1_GOSRA	8.0e-15	52.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G239600 PE=4 SV=1	[more]
B9HJY6_POPTR	1.4e-14	56.10	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15330g PE=4 SV=1	[more]
A0A067L6Q9_JATCU	2.3e-14	56.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02178 PE=4 SV=1	[more]

BLAST of WMU14998 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432698\|ref\|XP_004134136.1\|	2.3e-31	78.79	PREDICTED: preprotein translocase subunit SECE1 [Cucumis sativus]	[more]
gi\|659076435\|ref\|XP_008438678.1\|	4.4e-30	79.00	PREDICTED: preprotein translocase subunit SECE1 [Cucumis melo]	[more]
gi\|747051014\|ref\|XP_011071590.1\|	3.2e-17	59.26	PREDICTED: preprotein translocase subunit SECE1 [Sesamum indicum]	[more]
gi\|645235523\|ref\|XP_008224311.1\|	2.7e-16	58.54	PREDICTED: preprotein translocase subunit SECE1 [Prunus mume]	[more]
gi\|596288401\|ref\|XP_007225931.1\|	1.8e-15	56.10	hypothetical protein PRUPE_ppa012169mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021626	Cla021626	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0089086	S1_0089086	EST
S1_0114240	S1_0114240	EST
S1_0152305	S1_0152305	EST
S3_0151483	S3_0151483	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.5.1030		coord: 122..170 score: 2.
None	No IPR available	PANTHER	PTHR37240	FAMILY NOT NAMED	coord: 2..182 score: 4.1
None	No IPR available	PANTHER	PTHR37240:SF1	PREPROTEIN TRANSLOCASE SUBUNIT SECE1	coord: 2..182 score: 4.1