WMU14541 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU14541
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gamma-tubulin complex component
Location	Chr4 : 1596676 .. 1597333 (-)
Sequence length	664

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TAAAGGGTATATCTCAGAGAGTATGGAACGTTTTCCAGCTGAAGATATTGGAACTGTTGGACATGCTTTTGTGCTGCATGCAGGATGAGCTTTCAGAATACTATAAACTGTTGGCAGTTCTCGAAAGCCCAGGCGATGAAATCCAATACCTTTGGTTTCGGAGGCAGCAAGTTCGGGAAACTATCTGTCTCTTAGGAGATTGGCAGTCTGGTTTGCTGAGCCAATGGCAAAAATGAGGTTGATGGCTGTATTGGTCGACAAGTGTAGAGTCTTGAAGGGTGGGGCAATGGCTGGGGCCATCCATTTACATGCTCAGCATGGTGACCCCTTGGTGCTTGAATTCATGAGGCGTTTGCTGCGACGTGTATGCTCTCCCCTTTTTGAGATGGTAAGGAGTTGGGTTTTAGAAGGGGAGCTGGAAGACATTTTTTCTGAATTTTTTGTTGTCGGGCAACAAGTGAAAGCTGAATCTCTCTGGAGGGAAGGTTATAGGCTTCACGCTGGCATGCTTCCATCTTTTATTCGCAATCTCTAGCCCAACGTATTTTAAGGACTGGGAAATCAATTAATTCCTTCGTGTCTGTTGTGAGGATATGGGATGGGCTGATGCTGCAACAGAAGCAGCAGTAGCTGCTGGGACTACAACTAAAAGGGGGCTTGGATA

Library


Library category	ESTs
watermelon fruit 26d library	3

Homology

[Close]

BLAST of WMU14541 vs. TAIR10
Match: AT5G06680.1 (AT5G06680.1 spindle pole body component 98)

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-65
Identity = 125/174 (71.84%), Postives = 138/174 (79.31%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           K +I+ESM+RFPAED+GTVG AF             + +  + +  NPIPLVSE+ASS N
Sbjct: 244 KTFITESMDRFPAEDVGTVGQAFCAALQDELSDYYKLLAVLEAQAMNPIPLVSESASSNN 303

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FM  LLR
Sbjct: 304 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMMSLLR 363

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
            VCSPLFEMVRSWVLEGELED F EFFVVGQ VK + LWREGY+LH  MLPSFI
Sbjct: 364 CVCSPLFEMVRSWVLEGELEDTFGEFFVVGQPVKVDLLWREGYKLHPAMLPSFI 417

Query: 182  241
           
Sbjct: 424  417

Query: 242  301
           
Sbjct: 484  417

Query: 302  361
           
Sbjct: 544  417

Query: 362  421
           
Sbjct: 604  417

Query: 422  481
           
Sbjct: 664  417

Query: 482  524
           
Sbjct: 724  417

HSP 2 Score: 32.7 bits (73), Expect = 3.5e-01
Identity = 16/18 (88.89%), Postives = 14/18 (77.78%), Query Frame = 1


Query: 517 FYSQSLAQRILRTGKSIN 571
           F S SLAQRILRTGKSIN
Sbjct: 416 FISPSLAQRILRTGKSIN 433

[Close]

BLAST of WMU14541 vs. Swiss-Prot
Match: GACP3_ARATH (Gamma-tubulin complex component 3 OS=Arabidopsis thaliana GN=GCP3 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.7e-64
Identity = 125/174 (71.84%), Postives = 138/174 (79.31%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           K +I+ESM+RFPAED+GTVG AF             + +  + +  NPIPLVSE+ASS N
Sbjct: 244 KTFITESMDRFPAEDVGTVGQAFCAALQDELSDYYKLLAVLEAQAMNPIPLVSESASSNN 303

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FM  LLR
Sbjct: 304 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMMSLLR 363

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
            VCSPLFEMVRSWVLEGELED F EFFVVGQ VK + LWREGY+LH  MLPSFI
Sbjct: 364 CVCSPLFEMVRSWVLEGELEDTFGEFFVVGQPVKVDLLWREGYKLHPAMLPSFI 417

Query: 182  241
           
Sbjct: 424  417

Query: 242  301
           
Sbjct: 484  417

Query: 302  361
           
Sbjct: 544  417

Query: 362  421
           
Sbjct: 604  417

Query: 422  481
           
Sbjct: 664  417

Query: 482  524
           
Sbjct: 724  417

HSP 2 Score: 32.7 bits (73), Expect = 6.1e+00
Identity = 16/18 (88.89%), Postives = 14/18 (77.78%), Query Frame = 1


Query: 517 FYSQSLAQRILRTGKSIN 571
           F S SLAQRILRTGKSIN
Sbjct: 416 FISPSLAQRILRTGKSIN 433

[Close]

BLAST of WMU14541 vs. Swiss-Prot
Match: GCP3_DROME (Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-17
Identity = 39/118 (33.05%), Postives = 70/118 (59.32%), Query Frame = 2


Query: 173 SGNYLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRR 232
           +G+ ++L +L  W+ +P+ +M+ +  + D C+V KGG +A  ++    +G+ +V + +  
Sbjct: 353 AGDEMTLFKLLAWYIKPLHRMQWLTKIADACQVKKGGDLASTVYDFLDNGNDMVNKLVED 412

Query: 233 LLRRVCSPLFEMVRSWVLEGELEDIFSEFFVVG-QQVKAESLWREGYRLHAGMLPSFI 292
           LL  +C PL  M+  W+LEG + D+  EFFV   + V  + LW + +RL   MLP F+
Sbjct: 413 LLTAICGPLVRMISKWILEGGISDMHREFFVKSIKDVGVDRLWHDKFRLRLPMLPKFV 470

Query: 293  352
           
Sbjct: 473  470

Query: 353  412
           
Sbjct: 533  470

Query: 413  472
           
Sbjct: 593  470

Query: 473  524
           
Sbjct: 653  470

[Close]

BLAST of WMU14541 vs. Swiss-Prot
Match: SPC98_DICDI (Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = 2


Query: 176 GNYLSLRRLAVWFAEPMAKMRLMAVLVDKCRV-LKGGAMAGAIHLHAQHGDPLVLEFMRR 235
           G+ L+L RL VW   P+ +++++   VD   V +KGG +   I   ++HGD  +   +  
Sbjct: 261 GDSLTLIRLFVWIQSPLKRLKVLGTCVDSITVDMKGGEILSKIDTLSKHGDQDIRILIHN 320

Query: 236 LLRRVCSPLFEMVRSWVLEGELEDIFSEFFV-VGQQVKAESLWREGYRLHAGMLPSFI 295
           ++ ++C PLF M+R W+ +GE+ D + EFF+   + V+ E  W+E + + A +LPSFI
Sbjct: 321 IMFKICQPLFSMIRLWMFKGEINDPYQEFFIRQYESVQLEKTWKEKFAIVARLLPSFI 378

Query: 296  355
           
Sbjct: 381  378

Query: 356  415
           
Sbjct: 441  378

Query: 416  475
           
Sbjct: 501  378

Query: 476  524
           
Sbjct: 561  378

[Close]

BLAST of WMU14541 vs. Swiss-Prot
Match: ALP6_SCHPO (Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-10
Identity = 35/131 (26.72%), Postives = 64/131 (48.85%), Query Frame = 2


Query: 158 SEAASSGNYLSLRRLAVWFAEPMAKMRLMAVLV-DKCRVLKGGAMAGAIHLHAQHGDPLV 217
           ++A+     +++RR   W      K+R+++ +V D         +   +  +  HGDPL+
Sbjct: 301 ADASLEKPMVTIRRCIAWTQVAKLKLRILSSVVNDNMNQENKKRLIQVVSKYNVHGDPLI 360

Query: 218 LEFMRRLLRRVCSPLFEMVRSWVLEGELEDIFSEFFVV--------GQQVKAESLWREGY 277
            E   ++L  +  PL+EM+ +W+ +GEL D + EFFV           Q + + +W+  Y
Sbjct: 361 QELSDKILTEITGPLYEMIENWIYKGELVDPYQEFFVKEKNGSESHDHQGQGDVVWKGKY 420

Query: 278 RLHAGMLPSFI 337
            L   ++PSF+
Sbjct: 421 FLDKELIPSFL 431

Query: 338  397
           
Sbjct: 481  431

Query: 398  457
           
Sbjct: 541  431

Query: 458  517
           
Sbjct: 601  431

Query: 518  524
           
Sbjct: 661  431

[Close]

BLAST of WMU14541 vs. TrEMBL
Match: A0A0A0KYU4_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_4G561690 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.1e-76
Identity = 150/174 (86.21%), Postives = 154/174 (88.51%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESMERFPAEDIGTVGHAF             + +  + +  NPIPLVSEAASSGN
Sbjct: 242 KGYISESMERFPAEDIGTVGHAFCAALQDELSEYYKLLAILEAQSMNPIPLVSEAASSGN 301

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGG MAGAIHLHAQHGDPLVLEFMRRLLR
Sbjct: 302 YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGTMAGAIHLHAQHGDPLVLEFMRRLLR 361

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI
Sbjct: 362 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 415

Query: 182  241
           
Sbjct: 422  415

Query: 242  301
           
Sbjct: 482  415

Query: 302  361
           
Sbjct: 542  415

Query: 362  421
           
Sbjct: 602  415

Query: 422  481
           
Sbjct: 662  415

Query: 482  524
           
Sbjct: 722  415

[Close]

BLAST of WMU14541 vs. TrEMBL
Match: A0A0A0KYU4_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_4G561690 PE=3 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 8.1e+01
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 1


Query: 499 RWHASI---FYSQSLAQRILRTGKSIN 558
           R HA +   F SQSLAQRILRTGKSIN
Sbjct: 405 RLHAGMLPSFISQSLAQRILRTGKSIN 431

Query: 559  571
           
Sbjct: 465  431

HSP 2 Score: 32.0 bits (71), Expect = 1.2e+03
Identity = 14/29 (48.28%), Postives = 14/29 (48.28%), Query Frame = 3


Query: 570 FLRVCCEDMGWXXXXXXXXXXXXXXXKRG 629
           FLRVCCEDMGW               KRG
Sbjct: 432 FLRVCCEDMGWADAATEAAAAAGTTTKRG 460

Query: 630  657
           
Sbjct: 492  460

HSP 3 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NP+PLVSE ASSGN
Sbjct: 247 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPVPLVSETASSGN 306

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FMRRLLR
Sbjct: 307 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLR 366

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDI++EFF+VGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 367 RVCSPLFEMVRSWVLEGELEDIYAEFFIVGQPVKAESLWREGYRLHAGMLPSFI 420

Query: 182  241
           
Sbjct: 427  420

Query: 242  301
           
Sbjct: 487  420

Query: 302  361
           
Sbjct: 547  420

Query: 362  421
           
Sbjct: 607  420

Query: 422  481
           
Sbjct: 667  420

Query: 482  524
           
Sbjct: 727  420

[Close]

BLAST of WMU14541 vs. TrEMBL
Match: A0A061EWQ5_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_024946 PE=3 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 8.1e+01
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 1


Query: 499 RWHASI---FYSQSLAQRILRTGKSIN 558
           R HA +   F SQSLAQRILRTGKSIN
Sbjct: 410 RLHAGMLPSFISQSLAQRILRTGKSIN 436

Query: 559  571
           
Sbjct: 470  436

HSP 2 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NP+PLVSE ASSGN
Sbjct: 247 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPVPLVSETASSGN 306

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FMRRLLR
Sbjct: 307 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLR 366

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDI++EFF+VGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 367 RVCSPLFEMVRSWVLEGELEDIYAEFFIVGQPVKAESLWREGYRLHAGMLPSFI 420

Query: 182  241
           
Sbjct: 427  420

Query: 242  301
           
Sbjct: 487  420

Query: 302  361
           
Sbjct: 547  420

Query: 362  421
           
Sbjct: 607  420

Query: 422  481
           
Sbjct: 667  420

Query: 482  524
           
Sbjct: 727  420

[Close]

BLAST of WMU14541 vs. TrEMBL
Match: A0A061EXK8_THECC (Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_024946 PE=3 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 8.1e+01
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 1


Query: 499 RWHASI---FYSQSLAQRILRTGKSIN 558
           R HA +   F SQSLAQRILRTGKSIN
Sbjct: 410 RLHAGMLPSFISQSLAQRILRTGKSIN 436

Query: 559  571
           
Sbjct: 470  436

HSP 2 Score: 269.6 bits (688), Expect = 3.3e-69
Identity = 136/174 (78.16%), Postives = 148/174 (85.06%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NPIPL+SE ASS N
Sbjct: 250 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPIPLISEMASSSN 309

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKCRVL+GGAMAGAIHLHAQHGDPLV EFMR LL+
Sbjct: 310 YLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRNLLQ 369

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELED+F+EFFVVGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 370 RVCSPLFEMVRSWVLEGELEDLFAEFFVVGQPVKAESLWREGYRLHAGMLPSFI 423

Query: 182  241
           
Sbjct: 430  423

Query: 242  301
           
Sbjct: 490  423

Query: 302  361
           
Sbjct: 550  423

Query: 362  421
           
Sbjct: 610  423

Query: 422  481
           
Sbjct: 670  423

Query: 482  524
           
Sbjct: 730  423

[Close]

BLAST of WMU14541 vs. TrEMBL
Match: B9T277_RICCO (Gamma-tubulin complex component OS=Ricinus communis GN=RCOM_0413820 PE=3 SV=1)

HSP 1 Score: 33.5 bits (75), Expect = 4.0e+02
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 1


Query: 499 RWHASI---FYSQSLAQRILRTGKSIN 558
           R HA +   F S SLAQRILRTGKSIN
Sbjct: 413 RLHAGMLPSFISPSLAQRILRTGKSIN 439

Query: 559  571
           
Sbjct: 473  439

HSP 2 Score: 269.6 bits (688), Expect = 3.3e-69
Identity = 136/174 (78.16%), Postives = 148/174 (85.06%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NPIPLVSE ASSGN
Sbjct: 247 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSTNPIPLVSENASSGN 306

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+ L+GGAMAGAIHLHAQHGDPLV +FMRRLLR
Sbjct: 307 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKALRGGAMAGAIHLHAQHGDPLVHDFMRRLLR 366

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDIF+EFF+VGQ VKAESLWREGYRLHAGMLP FI
Sbjct: 367 RVCSPLFEMVRSWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHAGMLPLFI 420

Query: 182  241
           
Sbjct: 427  420

Query: 242  301
           
Sbjct: 487  420

Query: 302  361
           
Sbjct: 547  420

Query: 362  421
           
Sbjct: 607  420

Query: 422  481
           
Sbjct: 667  420

Query: 482  524
           
Sbjct: 727  420

[Close]

BLAST of WMU14541 vs. NCBI nr
Match: gi|659083185|ref|XP_008442226.1| (PREDICTED: gamma-tubulin complex component 3 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 9.6e-78
Identity = 151/174 (86.78%), Postives = 155/174 (89.08%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESMERFPAEDIGTVGHAF             + +  + +  NPIPLVSEAASSGN
Sbjct: 242 KGYISESMERFPAEDIGTVGHAFCAALQDELSEYYKLLAILEAQSMNPIPLVSEAASSGN 301

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR
Sbjct: 302 YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 361

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI
Sbjct: 362 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 415

Query: 182  241
           
Sbjct: 422  415

Query: 242  301
           
Sbjct: 482  415

Query: 302  361
           
Sbjct: 542  415

Query: 362  421
           
Sbjct: 602  415

Query: 422  481
           
Sbjct: 662  415

Query: 482  524
           
Sbjct: 722  415

[Close]

BLAST of WMU14541 vs. NCBI nr
Match: gi|449453900|ref|XP_004144694.1| (PREDICTED: gamma-tubulin complex component 3 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.8e-77
Identity = 150/174 (86.21%), Postives = 154/174 (88.51%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESMERFPAEDIGTVGHAF             + +  + +  NPIPLVSEAASSGN
Sbjct: 242 KGYISESMERFPAEDIGTVGHAFCAALQDELSEYYKLLAILEAQSMNPIPLVSEAASSGN 301

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGG MAGAIHLHAQHGDPLVLEFMRRLLR
Sbjct: 302 YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGTMAGAIHLHAQHGDPLVLEFMRRLLR 361

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI
Sbjct: 362 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 415

Query: 182  241
           
Sbjct: 422  415

Query: 242  301
           
Sbjct: 482  415

Query: 302  361
           
Sbjct: 542  415

Query: 362  421
           
Sbjct: 602  415

Query: 422  481
           
Sbjct: 662  415

Query: 482  524
           
Sbjct: 722  415

[Close]

BLAST of WMU14541 vs. NCBI nr
Match: gi|590637139|ref|XP_007029034.1| (Spindle pole body component 98 isoform 2 [Theobroma cacao])

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-71
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NP+PLVSE ASSGN
Sbjct: 247 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPVPLVSETASSGN 306

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FMRRLLR
Sbjct: 307 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLR 366

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDI++EFF+VGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 367 RVCSPLFEMVRSWVLEGELEDIYAEFFIVGQPVKAESLWREGYRLHAGMLPSFI 420

Query: 182  241
           
Sbjct: 427  420

Query: 242  301
           
Sbjct: 487  420

Query: 302  361
           
Sbjct: 547  420

Query: 362  421
           
Sbjct: 607  420

Query: 422  481
           
Sbjct: 667  420

Query: 482  524
           
Sbjct: 727  420

[Close]

BLAST of WMU14541 vs. NCBI nr
Match: gi|590637135|ref|XP_007029033.1| (Spindle pole body component 98 isoform 1 [Theobroma cacao])

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-71
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NP+PLVSE ASSGN
Sbjct: 247 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPVPLVSETASSGN 306

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKC+VL+GGAMAGAIHLHAQHGDPLV +FMRRLLR
Sbjct: 307 YLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLR 366

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELEDI++EFF+VGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 367 RVCSPLFEMVRSWVLEGELEDIYAEFFIVGQPVKAESLWREGYRLHAGMLPSFI 420

Query: 182  241
           
Sbjct: 427  420

Query: 242  301
           
Sbjct: 487  420

Query: 302  361
           
Sbjct: 547  420

Query: 362  421
           
Sbjct: 607  420

Query: 422  481
           
Sbjct: 667  420

Query: 482  524
           
Sbjct: 727  420

[Close]

BLAST of WMU14541 vs. NCBI nr
Match: gi|255583160|ref|XP_002532346.1| (PREDICTED: gamma-tubulin complex component 3 [Ricinus communis])

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 136/174 (78.16%), Postives = 148/174 (85.06%), Query Frame = 2


Query: 2   KGYISESMERFPAEDIGTVGHAFVLHAG*AFRIL*TVGSSRKPRR*NPIPLVSEAASSGN 61
           KGYISESM+RFPAED+GTVG AF             + +  + +  NPIPL+SE ASS N
Sbjct: 250 KGYISESMDRFPAEDVGTVGQAFCAALQDELSEYYKLLAVLEAQSMNPIPLISEMASSSN 309

Query: 62  YLSLRRLAVWFAEPMAKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLR 121
           YLSLRRL+VWFAEPM KMRLMAVLVDKCRVL+GGAMAGAIHLHAQHGDPLV EFMR LL+
Sbjct: 310 YLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRNLLQ 369

Query: 122 RVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHAGMLPSFI 181
           RVCSPLFEMVRSWVLEGELED+F+EFFVVGQ VKAESLWREGYRLHAGMLPSFI
Sbjct: 370 RVCSPLFEMVRSWVLEGELEDLFAEFFVVGQPVKAESLWREGYRLHAGMLPSFI 423

Query: 182  241
           
Sbjct: 430  423

Query: 242  301
           
Sbjct: 490  423

Query: 302  361
           
Sbjct: 550  423

Query: 362  421
           
Sbjct: 610  423

Query: 422  481
           
Sbjct: 670  423

Query: 482  524
           
Sbjct: 730  423

The following BLAST results are available for this feature:

BLAST of WMU14541 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06680.1	1.5e-65	71.84	spindle pole body component 98	[more]

BLAST of WMU14541 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GACP3_ARATH	2.7e-64	71.84	Gamma-tubulin complex component 3 OS=Arabidopsis thaliana GN=GCP3 PE=1 SV=1	[more]
GCP3_DROME	5.5e-17	33.05	Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 ...	[more]
SPC98_DICDI	2.7e-16	34.75	Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2	[more]
ALP6_SCHPO	6.5e-10	26.72	Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of WMU14541 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYU4_CUCSA	8.1e-76	86.21	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_4G561690 PE=3 SV=1	[more]
A0A0A0KYU4_CUCSA	8.1e+01	74.07	Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_4G561690 PE=3 SV=1	[more]
A0A061EWQ5_THECC	8.1e+01	74.07	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_024946 PE=3 SV=1	[more]
A0A061EXK8_THECC	8.1e+01	74.07	Gamma-tubulin complex component OS=Theobroma cacao GN=TCM_024946 PE=3 SV=1	[more]
B9T277_RICCO	4.0e+02	70.37	Gamma-tubulin complex component OS=Ricinus communis GN=RCOM_0413820 PE=3 SV=1	[more]

BLAST of WMU14541 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083185\|ref\|XP_008442226.1\|	9.6e-78	86.78	PREDICTED: gamma-tubulin complex component 3 [Cucumis melo]	[more]
gi\|449453900\|ref\|XP_004144694.1\|	2.8e-77	86.21	PREDICTED: gamma-tubulin complex component 3 [Cucumis sativus]	[more]
gi\|590637139\|ref\|XP_007029034.1\|	1.3e-71	78.16	Spindle pole body component 98 isoform 2 [Theobroma cacao]	[more]
gi\|590637135\|ref\|XP_007029033.1\|	1.3e-71	78.16	Spindle pole body component 98 isoform 1 [Theobroma cacao]	[more]
gi\|255583160\|ref\|XP_002532346.1\|	1.1e-70	78.16	PREDICTED: gamma-tubulin complex component 3 [Ricinus communis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008037	Cla008037	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0092969	S3_0092969	EST
S3_0098935	S3_0098935	EST
S3_0150085	S3_0150085	EST