WMU13906 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU13906
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Replicative DNA helicase
Location	Chr3 : 21499911 .. 21501515 (-)
Sequence length	522

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGCCCAAAATTTCAGTGGCTGACACTGAAGACACCAGATTGTCTACTCTCACTCCAATGGCTTCTCTTCACCTTCTTCAACCTCTCACTTTCACTCTTCCCATTCTGCCCCTCTTTTTTCCCAATATTCCCATCCAATCAGTTTCAGACCATCCTTTCCCAAAAAGCCTTTTCCACTCAAACCCCTCACTCTTCCTTTGCTCGCCTAATCGGACTCCCCCAAGTCTTTAGAACCCGACCCCCAACTTCTCCTTCAAAAACTGGCCGATAGTTTTGATCTCTCCCGAGATTACTTTGAAAAACTTCCCCGTGATCTTCGTCTTGATCTCAATGATGCTGCTTTTGATCTTTCTAATGGACCCGTTATTGACGAGTGTGGCCAAGAGATGGGAGAAATATTGCTAAACCTCTCTCGGGCATGGGAGGTAGCTGACACCTCCACTTCACATGCTTTAGTAAGCAAGTTCCCCACGTTGGTGCAATCTTTGACAGACAATTACAAGTCAGGATTTGGCAAGCGTT

Library


Library category	ESTs
watermelon fruit 26d library	4

Homology

[Close]

BLAST of WMU13906 vs. TAIR10
Match: AT5G37360.1 (AT5G37360.1 unknown protein)

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-33
Identity = 73/107 (68.22%), Postives = 79/107 (73.83%), Query Frame = 3


Query: 210 SDSPKSLE---PDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECG 269
           SDS K LE   P  + LL +L+  FDL  DYF++LP DLRLDLNDAAFDLSNGPVIDECG
Sbjct: 59  SDSTKPLEIEEPSSKSLLLQLSKCFDLPSDYFQQLPNDLRLDLNDAAFDLSNGPVIDECG 118

Query: 270 QEMGEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           QE+GE LLNLSRAWE ADTSTS +LV K P L   LTD  +S FGKR
Sbjct: 119 QELGETLLNLSRAWEQADTSTSRSLVEKLPELEILLTDGARSAFGKR 165

Query: 330  389
           
Sbjct: 179  165

Query: 390  449
           
Sbjct: 239  165

Query: 450  509
           
Sbjct: 299  165

Query: 510  522
           
Sbjct: 359  165

[Close]

BLAST of WMU13906 vs. TrEMBL
Match: A0A0A0M0A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665900 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 113/139 (81.29%), Postives = 119/139 (85.61%), Query Frame = 3


Query: 111 PLFSQYSHPISFRPSXXXXXXXXXXXXXXXXA--*SDSPKSLEPDPQLLLQKLADSFDLS 170
           PLFSQYS+PISFRPS                A   SDSPKSL+P+P+LLLQ+LADSFDLS
Sbjct: 19  PLFSQYSNPISFRPSFPKKPFPLKKSLTLSFALTESDSPKSLQPNPELLLQELADSFDLS 78

Query: 171 RDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWEVADTSTSHALVSK 230
           RDYFEKLPRDLRLDLNDAAFDLSNGPV+DECGQEMGEILLNLSRAWE ADTSTSHALVSK
Sbjct: 79  RDYFEKLPRDLRLDLNDAAFDLSNGPVVDECGQEMGEILLNLSRAWEAADTSTSHALVSK 138

Query: 231 FPTLVQSLTDNYKSGFGKR 290
           FPTLVQSLTDNYKSGFGKR
Sbjct: 139 FPTLVQSLTDNYKSGFGKR 157

Query: 291  350
           
Sbjct: 199  157

Query: 351  410
           
Sbjct: 259  157

Query: 411  470
           
Sbjct: 319  157

Query: 471  522
           
Sbjct: 379  157

[Close]

BLAST of WMU13906 vs. TrEMBL
Match: A0A067EMP0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021800mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKSL+PD Q LLQ+LADSFDL  DY  +LPRDLRLDLNDAAFDLSNGPV+DECGQE+
Sbjct: 60  SDSPKSLQPDSQTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLSNGPVVDECGQEL 119

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE+LLNL+RAWE AD+STSH+LV K P L  SLTDN KS FGKR
Sbjct: 120 GELLLNLTRAWEQADSSTSHSLVKKLPALESSLTDNAKSAFGKR 163

Query: 330  389
           
Sbjct: 180  163

Query: 390  449
           
Sbjct: 240  163

Query: 450  509
           
Sbjct: 300  163

Query: 510  522
           
Sbjct: 360  163

[Close]

BLAST of WMU13906 vs. TrEMBL
Match: V4VTL8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021307mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKSL+PD Q LLQ+LADSFDL  DY  +LPRDLRLDLNDAAFDLSNGPV+DECGQE+
Sbjct: 60  SDSPKSLQPDSQTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLSNGPVVDECGQEL 119

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE+LLNL+RAWE AD+STSH+LV K P L  SLTDN KS FGKR
Sbjct: 120 GELLLNLTRAWEQADSSTSHSLVKKLPALESSLTDNAKSAFGKR 163

Query: 330  389
           
Sbjct: 180  163

Query: 390  449
           
Sbjct: 240  163

Query: 450  509
           
Sbjct: 300  163

Query: 510  522
           
Sbjct: 360  163

[Close]

BLAST of WMU13906 vs. TrEMBL
Match: A0A151U5G1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_007198 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKS+EPDPQ LLQ++ADSFDL  DYF +LPRDLRLDLNDAAFDLS+GPV+DECGQE+
Sbjct: 58  SDSPKSIEPDPQTLLQQIADSFDLPPDYFSQLPRDLRLDLNDAAFDLSSGPVLDECGQEL 117

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE LLNLSRAWE+ADTSTSH+LV K P +   LT + KS  GKR
Sbjct: 118 GETLLNLSRAWELADTSTSHSLVKKLPLIEAKLTGSSKSALGKR 161

Query: 330  389
           
Sbjct: 178  161

Query: 390  449
           
Sbjct: 238  161

Query: 450  509
           
Sbjct: 298  161

Query: 510  522
           
Sbjct: 358  161

[Close]

BLAST of WMU13906 vs. TrEMBL
Match: C6TCG5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G221500 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKS+EPDPQ LLQ++ADSFDL  DYF KLP DLRLDLNDAAFDLSNGPV+DECGQE+
Sbjct: 58  SDSPKSIEPDPQTLLQEIADSFDLPSDYFSKLPGDLRLDLNDAAFDLSNGPVLDECGQEL 117

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE LLNLSRAWE+ADTSTSH+LV K P +   LT   KS  GKR
Sbjct: 118 GETLLNLSRAWELADTSTSHSLVKKLPLIEAKLTGYAKSALGKR 161

Query: 330  389
           
Sbjct: 178  161

Query: 390  449
           
Sbjct: 238  161

Query: 450  509
           
Sbjct: 298  161

Query: 510  522
           
Sbjct: 358  161

[Close]

BLAST of WMU13906 vs. NCBI nr
Match: gi|659086039|ref|XP_008443734.1| (PREDICTED: uncharacterized protein LOC103487250 isoform X1 [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-55
Identity = 116/140 (82.86%), Postives = 118/140 (84.29%), Query Frame = 3


Query: 108 APLFSQYSHPISFRPSXXXXXXXXXXXXXXXXA*--SDSPKSLEPDPQLLLQKLADSFDL 167
           APLFSQYS+PISFRPS                A   SDSPKSL PDPQLLLQ+LAD FDL
Sbjct: 18  APLFSQYSNPISFRPSFPKNPFPLKKSLTLSFALAESDSPKSLPPDPQLLLQELADGFDL 77

Query: 168 SRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWEVADTSTSHALVS 227
           SRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWE ADTSTSHALVS
Sbjct: 78  SRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWEAADTSTSHALVS 137

Query: 228 KFPTLVQSLTDNYKSGFGKR 287
           KFPTLVQSLTDNYKSGFGKR
Sbjct: 138 KFPTLVQSLTDNYKSGFGKR 157

Query: 288  347
           
Sbjct: 198  157

Query: 348  407
           
Sbjct: 258  157

Query: 408  467
           
Sbjct: 318  157

Query: 468  522
           
Sbjct: 378  157

[Close]

BLAST of WMU13906 vs. NCBI nr
Match: gi|449449589|ref|XP_004142547.1| (PREDICTED: uncharacterized protein LOC101217511 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 113/139 (81.29%), Postives = 119/139 (85.61%), Query Frame = 3


Query: 111 PLFSQYSHPISFRPSXXXXXXXXXXXXXXXXA--*SDSPKSLEPDPQLLLQKLADSFDLS 170
           PLFSQYS+PISFRPS                A   SDSPKSL+P+P+LLLQ+LADSFDLS
Sbjct: 19  PLFSQYSNPISFRPSFPKKPFPLKKSLTLSFALTESDSPKSLQPNPELLLQELADSFDLS 78

Query: 171 RDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWEVADTSTSHALVSK 230
           RDYFEKLPRDLRLDLNDAAFDLSNGPV+DECGQEMGEILLNLSRAWE ADTSTSHALVSK
Sbjct: 79  RDYFEKLPRDLRLDLNDAAFDLSNGPVVDECGQEMGEILLNLSRAWEAADTSTSHALVSK 138

Query: 231 FPTLVQSLTDNYKSGFGKR 290
           FPTLVQSLTDNYKSGFGKR
Sbjct: 139 FPTLVQSLTDNYKSGFGKR 157

Query: 291  350
           
Sbjct: 199  157

Query: 351  410
           
Sbjct: 259  157

Query: 411  470
           
Sbjct: 319  157

Query: 471  522
           
Sbjct: 379  157

[Close]

BLAST of WMU13906 vs. NCBI nr
Match: gi|659086041|ref|XP_008443735.1| (PREDICTED: uncharacterized protein LOC103487250 isoform X2 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 100/140 (71.43%), Postives = 102/140 (72.86%), Query Frame = 3


Query: 108 APLFSQYSHPISFRPSXXXXXXXXXXXXXXXXA*--SDSPKSLEPDPQLLLQKLADSFDL 167
           APLFSQYS+PISFRPS                A   SDSPKSL PDPQLLLQ+LAD FDL
Sbjct: 18  APLFSQYSNPISFRPSFPKNPFPLKKSLTLSFALAESDSPKSLPPDPQLLLQELADGFDL 77

Query: 168 SRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEMGEILLNLSRAWEVADTSTSHALVS 227
           SRDYFEKLPRDLRLD                CGQEMGEILLNLSRAWE ADTSTSHALVS
Sbjct: 78  SRDYFEKLPRDLRLD----------------CGQEMGEILLNLSRAWEAADTSTSHALVS 137

Query: 228 KFPTLVQSLTDNYKSGFGKR 287
           KFPTLVQSLTDNYKSGFGKR
Sbjct: 138 KFPTLVQSLTDNYKSGFGKR 141

Query: 288  347
           
Sbjct: 198  141

Query: 348  407
           
Sbjct: 258  141

Query: 408  467
           
Sbjct: 318  141

Query: 468  522
           
Sbjct: 378  141

[Close]

BLAST of WMU13906 vs. NCBI nr
Match: gi|1009117802|ref|XP_015875513.1| (PREDICTED: uncharacterized protein LOC107412282 [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKSLEPDPQ LL++LA+SFDL +DYF +LPRDLRLDLNDAAFDLSNGPV+DECGQE+
Sbjct: 319 SDSPKSLEPDPQSLLRELAESFDLPQDYFAQLPRDLRLDLNDAAFDLSNGPVLDECGQEL 378

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE LLNLSRAWEVADTSTS+ L+SK P L +SLTDN KS  G+R
Sbjct: 379 GETLLNLSRAWEVADTSTSYNLISKLPRLEESLTDNAKSALGRR 422

Query: 330  389
           
Sbjct: 439  422

Query: 390  449
           
Sbjct: 499  422

Query: 450  509
           
Sbjct: 559  422

Query: 510  522
           
Sbjct: 619  422

[Close]

BLAST of WMU13906 vs. NCBI nr
Match: gi|641833469|gb|KDO52482.1| (hypothetical protein CISIN_1g021800mg [Citrus sinensis])

HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3


Query: 210 SDSPKSLEPDPQLLLQKLADSFDLSRDYFEKLPRDLRLDLNDAAFDLSNGPVIDECGQEM 269
           SDSPKSL+PD Q LLQ+LADSFDL  DY  +LPRDLRLDLNDAAFDLSNGPV+DECGQE+
Sbjct: 60  SDSPKSLQPDSQTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLSNGPVVDECGQEL 119

Query: 270 GEILLNLSRAWEVADTSTSHALVSKFPTLVQSLTDNYKSGFGKR 329
           GE+LLNL+RAWE AD+STSH+LV K P L  SLTDN KS FGKR
Sbjct: 120 GELLLNLTRAWEQADSSTSHSLVKKLPALESSLTDNAKSAFGKR 163

Query: 330  389
           
Sbjct: 180  163

Query: 390  449
           
Sbjct: 240  163

Query: 450  509
           
Sbjct: 300  163

Query: 510  522
           
Sbjct: 360  163

The following BLAST results are available for this feature:

BLAST of WMU13906 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37360.1	2.7e-33	68.22	unknown protein	[more]

BLAST of WMU13906 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0A2_CUCSA	1.8e-54	81.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665900 PE=4 SV=1	[more]
A0A067EMP0_CITSI	1.1e-38	77.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021800mg PE=4 SV=1	[more]
V4VTL8_9ROSI	1.1e-38	77.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021307mg PE=4 SV=1	[more]
A0A151U5G1_CAJCA	2.6e-37	75.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_007198 PE=4 SV=1	[more]
C6TCG5_SOYBN	2.6e-37	75.96	Uncharacterized protein OS=Glycine max GN=GLYMA_20G221500 PE=2 SV=1	[more]

BLAST of WMU13906 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086039\|ref\|XP_008443734.1\|	3.1e-55	82.86	PREDICTED: uncharacterized protein LOC103487250 isoform X1 [Cucumis melo]	[more]
gi\|449449589\|ref\|XP_004142547.1\|	1.5e-54	81.29	PREDICTED: uncharacterized protein LOC101217511 [Cucumis sativus]	[more]
gi\|659086041\|ref\|XP_008443735.1\|	1.7e-42	71.43	PREDICTED: uncharacterized protein LOC103487250 isoform X2 [Cucumis melo]	[more]
gi\|1009117802\|ref\|XP_015875513.1\|	2.4e-39	78.85	PREDICTED: uncharacterized protein LOC107412282 [Ziziphus jujuba]	[more]
gi\|641833469\|gb\|KDO52482.1\|	8.9e-39	77.88	hypothetical protein CISIN_1g021800mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla000490	Cla000490	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0022415	S3_0022415	EST
S3_0074545	S3_0074545	EST
S3_0077170	S3_0077170	EST
S3_0115444	S3_0115444	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36802	FAMILY NOT NAMED	coord: 68..174 score: 4.0
None	No IPR available	PANTHER	PTHR36802:SF1	SUBFAMILY NOT NAMED	coord: 68..174 score: 4.0