WMU12188 (transcribed_cluster) Watermelon (97103) v1

NameWMU12188
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDigalactosyldiacylglycerol synthase 2, chloroplastic
LocationChr5 : 1616055 .. 1616416 (-)
Sequence length370
The following sequences are available for this feature:

transcribed_cluster sequence

TGCACCTGCATATATACATCACATGACTCTTGGATTTGAGGGGCCTCGAAAGAGTTTTTGGTGCCGTCCCCGGGAGCCTGCATCCAGATGAACAACAATGCAAAGAGCTTGGATTAGCTAGTCCTTCTAACAAAAAAAGGTTCGAGAAAAGTGATTAAAAATGAATGCATAAGTTCTGATCCCCCCCTTCAAAAATACTTTCCAAGAATGTTAAAATTAGAAAAGAATTGTTCACATTTGCCCTCCTTGTTCTTACACGTTGTGTTATTGTTGAAGCTGAGATTTGTAGTTAGAGACATCAGGAATGATTGAAAGTGATTGTAGAAATCAGGCTTCAGGACTAATCAGGAGTAGAAGATATAATACGAAG
BLAST of WMU12188 vs. TrEMBL
Match: A0A0A0L6B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122630 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3

Query: 30  LDLRGLERVFGAVPGSLHPDEQQCKELGLASPSNKKRFEK 89
           L   G  RVFGAVPGSLHPDEQQCKELGLASPS+K+  +K
Sbjct: 430 LGFEGSRRVFGAVPGSLHPDEQQCKELGLASPSSKRGSKK 469

Query: 90  149
           
Sbjct: 490 469

BLAST of WMU12188 vs. NCBI nr
Match: gi|449432175|ref|XP_004133875.1| (PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3

Query: 30  LDLRGLERVFGAVPGSLHPDEQQCKELGLASPSNKKRFEK 89
           L   G  RVFGAVPGSLHPDEQQCKELGLASPS+K+  +K
Sbjct: 430 LGFEGSRRVFGAVPGSLHPDEQQCKELGLASPSSKRGSKK 469

Query: 90  149
           
Sbjct: 490 469

BLAST of WMU12188 vs. NCBI nr
Match: gi|659075315|ref|XP_008438079.1| (PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 9.8e-08
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 3

Query: 30  LDLRGLERVFGAVPGSLHPDEQQCKELGLASPSNKKRFEK 89
           L   G  RVFGAVPGSLHPDEQQCKELGLASPS+++  +K
Sbjct: 430 LGFEGSRRVFGAVPGSLHPDEQQCKELGLASPSSRRGSKK 469

Query: 90  149
           
Sbjct: 490 469

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L6B2_CUCSA1.2e-0775.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449432175|ref|XP_004133875.1|4.4e-0875.00PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Cucumis sativus... [more]
gi|659075315|ref|XP_008438079.1|9.8e-0872.50PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021254Cla021254gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0092269S2_0092269EST
S2_0173797S2_0173797EST