WMU11749 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU11749
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Delta(7)-sterol-C5(6)-desaturase 1-like protein
Location	Chr7 : 31331804 .. 31332191 (-)
Sequence length	307

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACATACAAGATACCGCTACAATTATGGTCACTACTCCATATGGATGGATTGGATGTTTGGGACACTTCTTGATCCAATGGATACAGAAGCCAAAAGGGTTGTGATTGGTTGCTTCGACATGAATTGCTTACTCGTTATAGCTTTTGGGTAATTTGCGAAGCCATTCATACCATCAAATCAAACATTTAATCTCAGAGTTCAGGAATCCACAGAGCCTGTGTGCTGCTGCTGCTGCTATTGGTAAGTAAAACTTGTGGACGCATTTGTTGTATCTTTGTATATCATATTTAAATGAAAACTTGTAGGG

Library


Library category	ESTs
watermelon fruit 18d library	1
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU11749 vs. TAIR10
Match: AT3G02580.1 (AT3G02580.1 sterol 1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPM 61
           HT Y++NYGHY+IWMDWMFG+L DP+
Sbjct: 242 HTTYKHNYGHYTIWMDWMFGSLRDPL 267

Query: 62   80
           
Sbjct: 302  267

[Close]

BLAST of WMU11749 vs. TAIR10
Match: AT3G02590.1 (AT3G02590.1 Fatty acid hydroxylase superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPM 61
           HT Y++NYGHY+IWMDWMFG+L+ P+
Sbjct: 243 HTTYKHNYGHYTIWMDWMFGSLMVPL 268

Query: 62   80
           
Sbjct: 303  268

[Close]

BLAST of WMU11749 vs. Swiss-Prot
Match: SC5D_TOBAC (Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           H  YR+NYGHY+IWMDWMFGTL DP++ +AK++
Sbjct: 239 HRTYRHNYGHYTIWMDWMFGTLRDPVEEDAKKM 271

Query: 62   101
           
Sbjct: 299  271

[Close]

BLAST of WMU11749 vs. Swiss-Prot
Match: SC5D1_ARATH (Delta(7)-sterol-C5(6)-desaturase 1 OS=Arabidopsis thaliana GN=STE1 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-07
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPM 61
           HT Y++NYGHY+IWMDWMFG+L DP+
Sbjct: 242 HTTYKHNYGHYTIWMDWMFGSLRDPL 267

Query: 62   80
           
Sbjct: 302  267

[Close]

BLAST of WMU11749 vs. Swiss-Prot
Match: SC5D2_ARATH (Putative Delta(7)-sterol-C5(6)-desaturase 2 OS=Arabidopsis thaliana GN=HDF7 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPM 61
           HT Y++NYGHY+IWMDWMFG+L+ P+
Sbjct: 243 HTTYKHNYGHYTIWMDWMFGSLMVPL 268

Query: 62   80
           
Sbjct: 303  268

[Close]

BLAST of WMU11749 vs. TrEMBL
Match: A0A0A0L3B9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G409800 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAK 61
           HTRYRYNYGHYSIWMDWMFGTLLDPMD EAK
Sbjct: 242 HTRYRYNYGHYSIWMDWMFGTLLDPMDIEAK 272

Query: 62   95
           
Sbjct: 302  272

[Close]

BLAST of WMU11749 vs. TrEMBL
Match: W9SBF3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027055 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRVV 61
           HT YR+NYGHY+IWMDWMFGTL DP+D E+K+V+
Sbjct: 241 HTTYRHNYGHYTIWMDWMFGTLRDPIDDESKKVM 274

Query: 62   104
           
Sbjct: 301  274

[Close]

BLAST of WMU11749 vs. TrEMBL
Match: A0A022RY23_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011765mg PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           HT YR+NYGHY+IWMDWMFGTL DP++ EAK++
Sbjct: 239 HTTYRHNYGHYTIWMDWMFGTLRDPVEDEAKKI 271

Query: 62   101
           
Sbjct: 299  271

[Close]

BLAST of WMU11749 vs. TrEMBL
Match: A0A118K5B7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012760 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           HT YR+NYGHY++WMDWMFGTL DP++ EAK +
Sbjct: 240 HTTYRHNYGHYTVWMDWMFGTLRDPLEDEAKNI 272

Query: 62   101
           
Sbjct: 300  272

[Close]

BLAST of WMU11749 vs. TrEMBL
Match: A0A164UFV8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025906 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           HT YR+NYGHY+IWMDWMFGTL DP++ +AK++
Sbjct: 239 HTTYRHNYGHYTIWMDWMFGTLRDPIEDDAKKI 271

Query: 62   101
           
Sbjct: 299  271

[Close]

BLAST of WMU11749 vs. NCBI nr
Match: gi|659086753|ref|XP_008444093.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAK 61
           HTRYRYNYGHYSIWMDWMFGTLLDPMD EAK
Sbjct: 242 HTRYRYNYGHYSIWMDWMFGTLLDPMDIEAK 272

Query: 62   95
           
Sbjct: 302  272

[Close]

BLAST of WMU11749 vs. NCBI nr
Match: gi|449465599|ref|XP_004150515.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAK 61
           HTRYRYNYGHYSIWMDWMFGTLLDPMD EAK
Sbjct: 242 HTRYRYNYGHYSIWMDWMFGTLLDPMDIEAK 272

Query: 62   95
           
Sbjct: 302  272

[Close]

BLAST of WMU11749 vs. NCBI nr
Match: gi|703146683|ref|XP_010108862.1| (hypothetical protein L484_027055 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRVV 61
           HT YR+NYGHY+IWMDWMFGTL DP+D E+K+V+
Sbjct: 241 HTTYRHNYGHYTIWMDWMFGTLRDPIDDESKKVM 274

Query: 62   104
           
Sbjct: 301  274

[Close]

BLAST of WMU11749 vs. NCBI nr
Match: gi|848856022|ref|XP_012854674.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase [Erythranthe guttata])

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-08
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           HT YR+NYGHY+IWMDWMFGTL DP++ EAK++
Sbjct: 239 HTTYRHNYGHYTIWMDWMFGTLRDPVEDEAKKI 271

Query: 62   101
           
Sbjct: 299  271

[Close]

BLAST of WMU11749 vs. NCBI nr
Match: gi|747102741|ref|XP_011099542.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase [Sesamum indicum])

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-08
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 2


Query: 2   HTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKRV 61
           HT YR+NYGHY+IWMDWMFGTL DP++ EAK++
Sbjct: 239 HTTYRHNYGHYTIWMDWMFGTLRDPVEDEAKKI 271

Query: 62   101
           
Sbjct: 299  271

The following BLAST results are available for this feature:

BLAST of WMU11749 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02580.1	3.9e-08	73.08	sterol 1	[more]
AT3G02590.1	1.5e-07	69.23	Fatty acid hydroxylase superfamily protein	[more]

BLAST of WMU11749 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC5D_TOBAC	1.3e-08	66.67	Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1	[more]
SC5D1_ARATH	6.9e-07	73.08	Delta(7)-sterol-C5(6)-desaturase 1 OS=Arabidopsis thaliana GN=STE1 PE=1 SV=2	[more]
SC5D2_ARATH	2.6e-06	69.23	Putative Delta(7)-sterol-C5(6)-desaturase 2 OS=Arabidopsis thaliana GN=HDF7 PE=3...	[more]

BLAST of WMU11749 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3B9_CUCSA	1.6e-10	96.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G409800 PE=3 SV=1	[more]
W9SBF3_9ROSA	3.4e-08	73.53	Uncharacterized protein OS=Morus notabilis GN=L484_027055 PE=3 SV=1	[more]
A0A022RY23_ERYGU	7.5e-08	72.73	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011765mg PE=3 SV=1	[more]
A0A118K5B7_CYNCS	1.3e-07	69.70	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012760 PE=3 ...	[more]
A0A164UFV8_DAUCA	1.7e-07	69.70	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025906 PE=4 SV=1	[more]

BLAST of WMU11749 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086753\|ref\|XP_008444093.1\|	2.3e-10	96.77	PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Cucumis melo]	[more]
gi\|449465599\|ref\|XP_004150515.1\|	2.3e-10	96.77	PREDICTED: delta(7)-sterol-C5(6)-desaturase [Cucumis sativus]	[more]
gi\|703146683\|ref\|XP_010108862.1\|	3.7e-08	73.53	hypothetical protein L484_027055 [Morus notabilis]	[more]
gi\|848856022\|ref\|XP_012854674.1\|	8.2e-08	72.73	PREDICTED: delta(7)-sterol-C5(6)-desaturase [Erythranthe guttata]	[more]
gi\|747102741\|ref\|XP_011099542.1\|	8.2e-08	72.73	PREDICTED: delta(7)-sterol-C5(6)-desaturase [Sesamum indicum]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010940	Cla010940	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0067371	S2_0067371	EST
S3_0048249	S3_0048249	EST