WMU11524 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU11524
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Guanine deaminase
Location	Chr3 : 27015100 .. 27015525 (+)
Sequence length	317

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGCCCTGTCCGATGTGCTTTGGCGCCATCCATCTTTCAAGAATTAAGAGATTGGTTTATGGAGCCGAAGCAGAAGCTGCAAATTGCAGTAGGATTTGATGATTTCATTTGCTTGATGCCATTAGGGGCACTGGGGTTTTATCAGAAAGCTCATTTGGAAATCAAGAAAGCAGATGGGGAATGGTGCTGTCATTGCTGAGCAAGTATTTGAGAAAACAAGGAAAAATTTCAATTGTATTGAATAATTATCCTTTTCTTTTCTTTTTTCTTTTTCTTTTTCCTTGTTAAAATAATAATATCAAATGTTCATTACATCT

Library


Library category	ESTs
watermelon fruit 18d library	2

Homology

[Close]

BLAST of WMU11524 vs. TAIR10
Match: AT5G28050.2 (AT5G28050.2 Cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-12
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 127 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 176

Query: 61   120
           
Sbjct: 187  176

Query: 121  154
           
Sbjct: 247  176

HSP 2 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 22/37 (59.46%), Postives = 23/37 (62.16%), Query Frame = 2


Query: 68  KQKLQIAVGFDDFICLMPLGALGFYQKAHLEIKKADG 127
           K +  IA+GFDDFI    L   G YQK+ LEIKKADG
Sbjct: 149 KAEAAIAIGFDDFIA-DALRGTGVYQKSSLEIKKADG 184

Query: 128  179
           
Sbjct: 209  184

[Close]

BLAST of WMU11524 vs. TAIR10
Match: AT3G05300.1 (AT3G05300.1 Cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.1e-09
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAA---NCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVY A+ EAA     +RI    L D +RG G    S+
Sbjct: 39  EPCPMCFGAIHLSRLKRLVYEAKVEAALAIGFNRI----LADGVRGVGCYHNSN 88

Query: 61   120
           
Sbjct: 99   88

Query: 121  154
           
Sbjct: 159  88

[Close]

BLAST of WMU11524 vs. TrEMBL
Match: R0FH35_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10001660mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 203 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 252

Query: 61   120
           
Sbjct: 263  252

Query: 121  154
           
Sbjct: 323  252

[Close]

BLAST of WMU11524 vs. TrEMBL
Match: R0FH35_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10001660mg PE=4 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 1.0e+01
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 2


Query: 68  KQKLQIAVGFDDFICLMPLGALGFYQKAHLEIKKADG 127
           K +  IA+GFDDFI    L   G YQK+ LEI KADG
Sbjct: 225 KAEAAIAIGFDDFIA-DALRGTGVYQKSSLEIIKADG 260

Query: 128  179
           
Sbjct: 285  260

HSP 2 Score: 67.8 bits (164), Expect = 9.1e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 127 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 176

Query: 61   120
           
Sbjct: 187  176

Query: 121  154
           
Sbjct: 247  176

[Close]

BLAST of WMU11524 vs. TrEMBL
Match: F4K5T6_ARATH (Cytidine/deoxycytidylate deaminase family protein OS=Arabidopsis thaliana GN=At5g28050 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 1.2e+00
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 2


Query: 68  KQKLQIAVGFDDFICLMPLGALGFYQKAHLEIKKADG 127
           K +  IA+GFDDFI    L   G YQK+ LEIKKADG
Sbjct: 149 KAEAAIAIGFDDFIA-DALRGTGVYQKSSLEIKKADG 184

Query: 128  179
           
Sbjct: 209  184

HSP 2 Score: 67.8 bits (164), Expect = 9.1e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 108 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  154
           
Sbjct: 228  157

[Close]

BLAST of WMU11524 vs. TrEMBL
Match: D7M6T1_ARALL (Cytidine/deoxycytidylate deaminase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489639 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 1.2e+00
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 2


Query: 68  KQKLQIAVGFDDFICLMPLGALGFYQKAHLEIKKADG 127
           K +  IA+GFDDFI    L   G YQK+ LEIKKADG
Sbjct: 130 KAEAAIAIGFDDFIA-DALRGTGVYQKSSLEIKKADG 165

Query: 128  179
           
Sbjct: 190  165

HSP 2 Score: 67.8 bits (164), Expect = 9.1e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 108 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  154
           
Sbjct: 228  157

[Close]

BLAST of WMU11524 vs. TrEMBL
Match: Q94BU8_ARATH (AT5g28050/F15F15_120 OS=Arabidopsis thaliana GN=At5g28050 PE=2 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 1.2e+00
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 2


Query: 68  KQKLQIAVGFDDFICLMPLGALGFYQKAHLEIKKADG 127
           K +  IA+GFDDFI    L   G YQK+ LEIKKADG
Sbjct: 130 KAEAAIAIGFDDFIA-DALRGTGVYQKSSLEIKKADG 165

Query: 128  179
           
Sbjct: 190  165

HSP 2 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSRIKRLVYGA+AEAA       F + DA+RGTGV  ++S
Sbjct: 109 EPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKAS 158

Query: 61   120
           
Sbjct: 169  158

Query: 121  154
           
Sbjct: 229  158

[Close]

BLAST of WMU11524 vs. NCBI nr
Match: gi|727565602|ref|XP_010455164.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Camelina sativa])

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-10
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 114 EPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 163

Query: 61   120
           
Sbjct: 174  163

Query: 121  154
           
Sbjct: 234  163

[Close]

BLAST of WMU11524 vs. NCBI nr
Match: gi|79328917|ref|NP_001031959.1| (Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana])

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-10
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 127 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 176

Query: 61   120
           
Sbjct: 187  176

Query: 121  154
           
Sbjct: 247  176

[Close]

BLAST of WMU11524 vs. NCBI nr
Match: gi|727646752|ref|XP_010494074.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like isoform X1 [Camelina sativa])

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-10
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 108 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  154
           
Sbjct: 228  157

[Close]

BLAST of WMU11524 vs. NCBI nr
Match: gi|565460808|ref|XP_006288403.1| (hypothetical protein CARUB_v10001660mg, partial [Capsella rubella])

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-10
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 203 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 252

Query: 61   120
           
Sbjct: 263  252

Query: 121  154
           
Sbjct: 323  252

[Close]

BLAST of WMU11524 vs. NCBI nr
Match: gi|727491236|ref|XP_010421673.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Camelina sativa])

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-10
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   EPCPMCFGAIHLSRIKRLVYGAEAEAANCSRI**FHLLDAIRGTGVLSESS 60
           EPCPMCFGAIHLSR+KRLVYGA+AEAA       F + DA+RGTGV  +SS
Sbjct: 114 EPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDF-IADALRGTGVYQKSS 163

Query: 61   120
           
Sbjct: 174  163

Query: 121  154
           
Sbjct: 234  163

The following BLAST results are available for this feature:

BLAST of WMU11524 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28050.2	4.6e-12	68.63	Cytidine/deoxycytidylate deaminase family protein	[more]
AT3G05300.1	8.1e-09	57.41	Cytidine/deoxycytidylate deaminase family protein	[more]

BLAST of WMU11524 vs. TrEMBL


Match Name	E-value	Identity	Description
R0FH35_9BRAS	9.1e-09	68.63	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10001660mg PE=4...	[more]
R0FH35_9BRAS	1.0e+01	56.76	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10001660mg PE=4...	[more]
F4K5T6_ARATH	1.2e+00	59.46	Cytidine/deoxycytidylate deaminase family protein OS=Arabidopsis thaliana GN=At5...	[more]
D7M6T1_ARALL	1.2e+00	59.46	Cytidine/deoxycytidylate deaminase family protein OS=Arabidopsis lyrata subsp. l...	[more]
Q94BU8_ARATH	1.2e+00	59.46	AT5g28050/F15F15_120 OS=Arabidopsis thaliana GN=At5g28050 PE=2 SV=1	[more]

BLAST of WMU11524 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|727565602\|ref\|XP_010455164.1\|	5.3e-10	68.63	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Camelina sativa]	[more]
gi\|79328917\|ref\|NP_001031959.1\|	6.9e-10	68.63	Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]	[more]
gi\|727646752\|ref\|XP_010494074.1\|	6.9e-10	68.63	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like isoform X1 [Camelina ...	[more]
gi\|565460808\|ref\|XP_006288403.1\|	6.9e-10	68.63	hypothetical protein CARUB_v10001660mg, partial [Capsella rubella]	[more]
gi\|727491236\|ref\|XP_010421673.1\|	6.9e-10	68.63	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Camelina sativa]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011272	Cla011272	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0054022	S2_0054022	EST
S2_0063920	S2_0063920	EST