WMU09613 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU09613
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein BPS1, chloroplastic
Location	Chr6 : 2440019 .. 2440398 (-)
Sequence length	400

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATGTAAATAGTGAAATTAGTAAGTATTATTACTACTACGTTGGAAAGTTTACCCCTCTGAAGGAGCTTGAGGCTATTGATCAATGTGTAGGCAATCTCCATCAAATGATCCCAAAGAATCCAGAAGTTGAGGAAGTTCAACCGCTGAAGAACACCGTATCAGAGTTGGGAGGAAAGGCAGAGAAACTATTCAGAAGGTCTACATTTTGCTGACAAAGGAAGTCGACAAACTTTTTCCAGATTGTTTTGGAAGGACGTGATGCTTTGCTATCAAACCTAAGGGGTCGTTAAATCATATGGAGCCGATCCAAGGAATGAAAACAGGCGATCAGACGATTACGGTGGAGCCTAAAACTTAAACCTGGTGTACAGGGGATGGGGTTGGTCTCTCTTGGTGTTT

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU09613 vs. TAIR10
Match: AT2G46080.1 (AT2G46080.1 Protein BYPASS related (InterPro:IPR008511))

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 43  GKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAEKLFRRSTFC*QRK 102
           G+ T LKELE++D  V  L+ MI    +  EV+  K+ V ELG +AEKL +        +
Sbjct: 254 GRTTILKELESVDASVEKLYPMIQDGVDPVEVEFFKDNVMELGTQAEKLSQGLDQL-LEE 313

Query: 103 STNFFQIVLEGRDALLSNLR 162
             +FF++ L GRD LL NLR
Sbjct: 314 VDSFFKLTLRGRDVLLCNLR 332

Query: 163  222
           
Sbjct: 374  332

Query: 223  282
           
Sbjct: 434  332

[Close]

BLAST of WMU09613 vs. TrEMBL
Match: A0A0A0K878_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006740 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1   DVNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKA 60
           DVNSEI   Y    GKFTPLKELEAIDQCVG L QMIP+ PEVEE Q LKN++SELGGK 
Sbjct: 242 DVNSEIRSIYAR--GKFTPLKELEAIDQCVGKLQQMIPEKPEVEEAQLLKNSISELGGKT 301

Query: 61  EKLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLRG 120
           EKL  +      ++  NFFQIVL GRDALLSNLRG
Sbjct: 302 EKL-SKDLHSLTKEVDNFFQIVLAGRDALLSNLRG 333

Query: 121  180
           
Sbjct: 362  333

Query: 181  240
           
Sbjct: 422  333

Query: 241  286
           
Sbjct: 482  333

[Close]

BLAST of WMU09613 vs. TrEMBL
Match: A0A068VL26_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008906001 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 4   VNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAE 63
           VN EI   Y    GK T LKELEA+D  V  L+ ++ +    EE +  KN+VS+LG +AE
Sbjct: 243 VNGEIRSIYSS--GKATVLKELEAVDANVKKLYPIVQEGVG-EEAEAYKNSVSDLGKRAE 302

Query: 64  KLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLR 123
           KL +       ++   FFQIVL GRDALL NLR
Sbjct: 303 KLSQGLDLL-AKEVDGFFQIVLSGRDALLCNLR 331

Query: 124  183
           
Sbjct: 363  331

Query: 184  243
           
Sbjct: 423  331

Query: 244  283
           
Sbjct: 483  331

[Close]

BLAST of WMU09613 vs. TrEMBL
Match: A0A0K9RJX9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057780 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 43  GKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAEKLFRRSTFC*QRK 102
           G+   LKELEA+D  +G L+ MI +  E  + +  +NTV+ELG +A+KL         ++
Sbjct: 254 GRNVLLKELEAVDSTIGKLNPMIEEGIEPMKTEAFQNTVAELGTRADKLSSGLDLL-AKE 313

Query: 103 STNFFQIVLEGRDALLSNLR 162
              FFQIVL GRDALL NLR
Sbjct: 314 VDGFFQIVLSGRDALLGNLR 332

Query: 163  222
           
Sbjct: 374  332

Query: 223  282
           
Sbjct: 434  332

[Close]

BLAST of WMU09613 vs. TrEMBL
Match: A9PCZ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08460g PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 4   VNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAE 63
           VN EI + +    GKFT LKEL+ ++  V NL+ MI       EV+   ++ S+LG +AE
Sbjct: 243 VNGEIREVFSR--GKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLGRRAE 302

Query: 64  KLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLR 123
           +L +   F   ++   FF+IVL GRDALL NLR
Sbjct: 303 RLSQVLDFL-AKEVDGFFKIVLSGRDALLCNLR 332

Query: 124  183
           
Sbjct: 363  332

Query: 184  243
           
Sbjct: 423  332

Query: 244  283
           
Sbjct: 483  332

[Close]

BLAST of WMU09613 vs. TrEMBL
Match: B9GQC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16410g PE=4 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 46  KFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAEKLFRRSTFC*QRKS 105
           KFT LKEL+ +D  V NL+ MI       E +   N+ S+LG +AEKL +   F   +  
Sbjct: 255 KFTALKELDEVDTAVKNLYPMIQDGTRPIEAEAFSNSFSDLGRRAEKLSQGLDFL-TKVV 314

Query: 106 TNFFQIVLEGRDALLSNLR 165
             FF+IVL GRDALL NLR
Sbjct: 315 DGFFKIVLSGRDALLCNLR 332

Query: 166  225
           
Sbjct: 375  332

Query: 226  283
           
Sbjct: 435  332

[Close]

BLAST of WMU09613 vs. NCBI nr
Match: gi|659116634|ref|XP_008458175.1| (PREDICTED: protein BPS1, chloroplastic [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1   DVNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKA 60
           DVNSEI   Y    GKFTPLKELEAIDQCVG LHQMIP+ PEVE+ Q LKN++SELGGK 
Sbjct: 242 DVNSEIRNIYTS--GKFTPLKELEAIDQCVGKLHQMIPEKPEVEDAQLLKNSISELGGKT 301

Query: 61  EKLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLRG 120
           EKL         ++  NFFQIVL GRDALLSNLRG
Sbjct: 302 EKL-SEDLHSLTKEVDNFFQIVLAGRDALLSNLRG 333

Query: 121  180
           
Sbjct: 362  333

Query: 181  240
           
Sbjct: 422  333

Query: 241  286
           
Sbjct: 482  333

[Close]

BLAST of WMU09613 vs. NCBI nr
Match: gi|449441412|ref|XP_004138476.1| (PREDICTED: protein BPS1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-24
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1   DVNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKA 60
           DVNSEI   Y    GKFTPLKELEAIDQCVG L QMIP+ PEVEE Q LKN++SELGGK 
Sbjct: 242 DVNSEIRSIYAR--GKFTPLKELEAIDQCVGKLQQMIPEKPEVEEAQLLKNSISELGGKT 301

Query: 61  EKLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLRG 120
           EKL  +      ++  NFFQIVL GRDALLSNLRG
Sbjct: 302 EKL-SKDLHSLTKEVDNFFQIVLAGRDALLSNLRG 333

Query: 121  180
           
Sbjct: 362  333

Query: 181  240
           
Sbjct: 422  333

Query: 241  286
           
Sbjct: 482  333

[Close]

BLAST of WMU09613 vs. NCBI nr
Match: gi|661874913|emb|CDP20378.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 4   VNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAE 63
           VN EI   Y    GK T LKELEA+D  V  L+ ++ +    EE +  KN+VS+LG +AE
Sbjct: 243 VNGEIRSIYSS--GKATVLKELEAVDANVKKLYPIVQEGVG-EEAEAYKNSVSDLGKRAE 302

Query: 64  KLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLR 123
           KL +       ++   FFQIVL GRDALL NLR
Sbjct: 303 KLSQGLDLL-AKEVDGFFQIVLSGRDALLCNLR 331

Query: 124  183
           
Sbjct: 363  331

Query: 184  243
           
Sbjct: 423  331

Query: 244  283
           
Sbjct: 483  331

[Close]

BLAST of WMU09613 vs. NCBI nr
Match: gi|902224602|gb|KNA19826.1| (hypothetical protein SOVF_057780 [Spinacia oleracea])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 43  GKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAEKLFRRSTFC*QRK 102
           G+   LKELEA+D  +G L+ MI +  E  + +  +NTV+ELG +A+KL         ++
Sbjct: 254 GRNVLLKELEAVDSTIGKLNPMIEEGIEPMKTEAFQNTVAELGTRADKLSSGLDLL-AKE 313

Query: 103 STNFFQIVLEGRDALLSNLR 162
              FFQIVL GRDALL NLR
Sbjct: 314 VDGFFQIVLSGRDALLGNLR 332

Query: 163  222
           
Sbjct: 374  332

Query: 223  282
           
Sbjct: 434  332

[Close]

BLAST of WMU09613 vs. NCBI nr
Match: gi|566203245|ref|XP_002320819.2| (hypothetical protein POPTR_0014s08460g [Populus trichocarpa])

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 4   VNSEISKYYYYYVGKFTPLKELEAIDQCVGNLHQMIPKNPEVEEVQPLKNTVSELGGKAE 63
           VN EI + +    GKFT LKEL+ ++  V NL+ MI       EV+   ++ S+LG +AE
Sbjct: 243 VNGEIREVFSR--GKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLGRRAE 302

Query: 64  KLFRRSTFC*QRKSTNFFQIVLEGRDALLSNLR 123
           +L +   F   ++   FF+IVL GRDALL NLR
Sbjct: 303 RLSQVLDFL-AKEVDGFFKIVLSGRDALLCNLR 332

Query: 124  183
           
Sbjct: 363  332

Query: 184  243
           
Sbjct: 423  332

Query: 244  283
           
Sbjct: 483  332

The following BLAST results are available for this feature:

BLAST of WMU09613 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46080.1	5.1e-08	42.50	Protein BYPASS related (InterPro:IPR008511)	[more]

BLAST of WMU09613 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K878_CUCSA	1.3e-23	68.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006740 PE=4 SV=1	[more]
A0A068VL26_COFCA	5.7e-08	47.31	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008906001 PE=4 SV=1	[more]
A0A0K9RJX9_SPIOL	7.5e-08	46.25	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057780 PE=4 SV=1	[more]
A9PCZ4_POPTR	1.7e-07	43.01	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08460g PE=2 SV=1	[more]
B9GQC2_POPTR	2.2e-07	46.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16410g PE=4 SV=2	[more]

BLAST of WMU09613 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116634\|ref\|XP_008458175.1\|	2.1e-24	68.42	PREDICTED: protein BPS1, chloroplastic [Cucumis melo]	[more]
gi\|449441412\|ref\|XP_004138476.1\|	4.8e-24	68.42	PREDICTED: protein BPS1, chloroplastic-like [Cucumis sativus]	[more]
gi\|661874913\|emb\|CDP20378.1\|	2.2e-08	47.31	unnamed protein product [Coffea canephora]	[more]
gi\|902224602\|gb\|KNA19826.1\|	2.2e-08	46.25	hypothetical protein SOVF_057780 [Spinacia oleracea]	[more]
gi\|566203245\|ref\|XP_002320819.2\|	6.3e-08	43.01	hypothetical protein POPTR_0014s08460g [Populus trichocarpa]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla006630	Cla006630	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0126778	S1_0126778	EST
S2_0134311	S2_0134311	EST