WMU08457 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU08457
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Histone deacetylation protein Rxt3
Location	Chr2 : 1861760 .. 1863284 (+)
Sequence length	532

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTATATCTAGAAACACATTCGTGTAGGTATGAACTCTGCTTTTCCGGAGAGAAGATGGTGAAAACCATTGTATCATCTCAAGGGCATGAAACTGAAGCCGAGAAGTCTCAAAATCACTTTGTACACTGCCCAAATGGTGAAAGAACCGATAACGATAATGCTTTGATCGATGTGTTTCGGTGGTCTCGCTGTAAGAAGCCACTGCCTCAGAAGGTTATGCGTTCTATTGGGATTCCACTGCCTTCGGAACACGTAGAGGTACTCGAGGATAATCTGGACTGGGAAGATGTACAGTGGTCACAGACTGGCGTTTGGATAGCTGGGAAGGAATATCTACTTGCTCGTGTGCATTTCCTATCCATGAATTAGTTCCATTTTAATGTTCATCTTGTAACTTTTTAGATGTATGAGAATATGTATTTCATAATCATATTTCAGAGTAAGGAGATGCTATTACAATAGAGTGCAAATTTTTATAGTTGGATGTGAAAAACTTGGTTCTTTGATCTTGAATCTCATCATCCTATATTCT

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU08457 vs. TAIR10
Match: AT5G08450.1 (AT5G08450.1 Histone deacetylation protein Rxt3 (InterPro:IPR013951))

HSP 1 Score: 194.5 bits (493), Expect = 5.5e-50
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQ---GHET-----EAEKSQNHFVHCPNGERTDND 60
           LYLETHSCRYELCF+GEK +K I +SQ    HE         KSQNH     NG++TD+D
Sbjct: 792 LYLETHSCRYELCFAGEKTIKAIQASQQQSSHEAMETDNNNNKSQNHLT---NGDKTDSD 851

Query: 61  NALIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYL 120
           N+LIDVFRWSRCKKPLPQK+MRSIG PLP++H+EVLE+NLDWEDVQWSQTGVWIAGKEY 
Sbjct: 852 NSLIDVFRWSRCKKPLPQKLMRSIGFPLPADHIEVLEENLDWEDVQWSQTGVWIAGKEYT 911

Query: 121 LARVHFLSMN 180
           LARVHFLS N
Sbjct: 912 LARVHFLSPN 918

Query: 181  240
           
Sbjct: 972  918

Query: 241  300
           
Sbjct: 1032  918

Query: 301  360
           
Sbjct: 1092  918

Query: 361  367
           
Sbjct: 1152  918

[Close]

BLAST of WMU08457 vs. TrEMBL
Match: A0A0A0LJZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337260 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.7e-64
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCFSGEKMVKTI SSQGHETEAEKSQNHF++CPNGERTDNDN LIDVFR
Sbjct: 686 LYLETHSCRYELCFSGEKMVKTIASSQGHETEAEKSQNHFLNCPNGERTDNDNTLIDVFR 745

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 746 WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYQLARVHFLS 805

Query: 121 MN 180
           MN
Sbjct: 806 MN 807

Query: 181  240
           
Sbjct: 866  807

Query: 241  300
           
Sbjct: 926  807

Query: 301  360
           
Sbjct: 986  807

Query: 361  367
           
Sbjct: 1046  807

[Close]

BLAST of WMU08457 vs. TrEMBL
Match: A0A0D2QAY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G106900 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 100/122 (81.97%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCF+GEKMVK  V+SQ HE +AEKSQNH  H  NGE+ D++N LIDVFR
Sbjct: 695 LYLETHSCRYELCFTGEKMVKATVASQAHEADAEKSQNHHSHSSNGEKNDSENTLIDVFR 754

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLP EHVEVL +N+DWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 755 WSRCKKPLPQKVMRSIGIPLPLEHVEVLVENVDWEDVQWSQTGVWIAGKEYTLARVHFLS 814

Query: 121 MN 180
            N
Sbjct: 815 PN 816

Query: 181  240
           
Sbjct: 875  816

Query: 241  300
           
Sbjct: 935  816

Query: 301  360
           
Sbjct: 995  816

Query: 361  367
           
Sbjct: 1055  816

[Close]

BLAST of WMU08457 vs. TrEMBL
Match: A0A061FAF0_THECC (Peptidyl-prolyl cis-trans isomerase G isoform 4 OS=Theobroma cacao GN=TCM_033022 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-53
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCF+GEKMVK   +SQ +ET+ EKSQNH  H  NGE+ D+DN +IDVFR
Sbjct: 697 LYLETHSCRYELCFTGEKMVKATPASQAYETDTEKSQNHHSHSSNGEKNDSDNIMIDVFR 756

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQK+MRSIGIPLP EHVEVLE+N+DWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 757 WSRCKKPLPQKIMRSIGIPLPLEHVEVLEENIDWEDVQWSQTGVWIAGKEYTLARVHFLS 816

Query: 121 MN 180
            N
Sbjct: 817 SN 818

Query: 181  240
           
Sbjct: 877  818

Query: 241  300
           
Sbjct: 937  818

Query: 301  360
           
Sbjct: 997  818

Query: 361  367
           
Sbjct: 1057  818

[Close]

BLAST of WMU08457 vs. TrEMBL
Match: A0A061FAS4_THECC (Peptidyl-prolyl cis-trans isomerase G isoform 1 OS=Theobroma cacao GN=TCM_033022 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-53
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCF+GEKMVK   +SQ +ET+ EKSQNH  H  NGE+ D+DN +IDVFR
Sbjct: 696 LYLETHSCRYELCFTGEKMVKATPASQAYETDTEKSQNHHSHSSNGEKNDSDNIMIDVFR 755

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQK+MRSIGIPLP EHVEVLE+N+DWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 756 WSRCKKPLPQKIMRSIGIPLPLEHVEVLEENIDWEDVQWSQTGVWIAGKEYTLARVHFLS 815

Query: 121 MN 180
            N
Sbjct: 816 SN 817

Query: 181  240
           
Sbjct: 876  817

Query: 241  300
           
Sbjct: 936  817

Query: 301  360
           
Sbjct: 996  817

Query: 361  367
           
Sbjct: 1056  817

[Close]

BLAST of WMU08457 vs. TrEMBL
Match: V4RXK6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024915mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 96/120 (80.00%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYEL F+GEKMVK + +S+ H+TE EKSQNH +H  NGE+ D DN + DVFR
Sbjct: 682 LYLETHSCRYELSFAGEKMVKAVPASESHDTETEKSQNHLLHSTNGEKNDGDNIMTDVFR 741

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLP EHVEV+E+NLDWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 742 WSRCKKPLPQKVMRSIGIPLPPEHVEVIEENLDWEDVQWSQTGVWIAGKEYTLARVHFLS 801

Query: 121  180
           
Sbjct: 802  801

Query: 181  240
           
Sbjct: 862  801

Query: 241  300
           
Sbjct: 922  801

Query: 301  360
           
Sbjct: 982  801

[Close]

BLAST of WMU08457 vs. NCBI nr
Match: gi|659121850|ref|XP_008460844.1| (PREDICTED: uncharacterized protein LOC103499596 isoform X2 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCFSGEKMVKTI SSQGHETEAEKSQNHFVHCPNGERTDNDN LIDVFR
Sbjct: 686 LYLETHSCRYELCFSGEKMVKTIASSQGHETEAEKSQNHFVHCPNGERTDNDNTLIDVFR 745

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 746 WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYQLARVHFLS 805

Query: 121 MN 180
           MN
Sbjct: 806 MN 807

Query: 181  240
           
Sbjct: 866  807

Query: 241  300
           
Sbjct: 926  807

Query: 301  360
           
Sbjct: 986  807

Query: 361  367
           
Sbjct: 1046  807

[Close]

BLAST of WMU08457 vs. NCBI nr
Match: gi|659121842|ref|XP_008460840.1| (PREDICTED: uncharacterized protein LOC103499596 isoform X1 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCFSGEKMVKTI SSQGHETEAEKSQNHFVHCPNGERTDNDN LIDVFR
Sbjct: 707 LYLETHSCRYELCFSGEKMVKTIASSQGHETEAEKSQNHFVHCPNGERTDNDNTLIDVFR 766

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 767 WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYQLARVHFLS 826

Query: 121 MN 180
           MN
Sbjct: 827 MN 828

Query: 181  240
           
Sbjct: 887  828

Query: 241  300
           
Sbjct: 947  828

Query: 301  360
           
Sbjct: 1007  828

Query: 361  367
           
Sbjct: 1067  828

[Close]

BLAST of WMU08457 vs. NCBI nr
Match: gi|778670329|ref|XP_011649442.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-64
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCFSGEKMVKTI SSQGHETEAEKSQNHF++CPNGERTDNDN LIDVFR
Sbjct: 686 LYLETHSCRYELCFSGEKMVKTIASSQGHETEAEKSQNHFLNCPNGERTDNDNTLIDVFR 745

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 746 WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYQLARVHFLS 805

Query: 121 MN 180
           MN
Sbjct: 806 MN 807

Query: 181  240
           
Sbjct: 866  807

Query: 241  300
           
Sbjct: 926  807

Query: 301  360
           
Sbjct: 986  807

Query: 361  367
           
Sbjct: 1046  807

[Close]

BLAST of WMU08457 vs. NCBI nr
Match: gi|823132537|ref|XP_012462906.1| (PREDICTED: uncharacterized protein LOC105782603 [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 5.9e-54
Identity = 100/122 (81.97%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCF+GEKMVK  V+SQ HE +AEKSQNH  H  NGE+ D++N LIDVFR
Sbjct: 695 LYLETHSCRYELCFTGEKMVKATVASQAHEADAEKSQNHHSHSSNGEKNDSENTLIDVFR 754

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQKVMRSIGIPLP EHVEVL +N+DWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 755 WSRCKKPLPQKVMRSIGIPLPLEHVEVLVENVDWEDVQWSQTGVWIAGKEYTLARVHFLS 814

Query: 121 MN 180
            N
Sbjct: 815 PN 816

Query: 181  240
           
Sbjct: 875  816

Query: 241  300
           
Sbjct: 935  816

Query: 301  360
           
Sbjct: 995  816

Query: 361  367
           
Sbjct: 1055  816

[Close]

BLAST of WMU08457 vs. NCBI nr
Match: gi|590612807|ref|XP_007022486.1| (Peptidyl-prolyl cis-trans isomerase G isoform 4 [Theobroma cacao])

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-53
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   LYLETHSCRYELCFSGEKMVKTIVSSQGHETEAEKSQNHFVHCPNGERTDNDNALIDVFR 60
           LYLETHSCRYELCF+GEKMVK   +SQ +ET+ EKSQNH  H  NGE+ D+DN +IDVFR
Sbjct: 697 LYLETHSCRYELCFTGEKMVKATPASQAYETDTEKSQNHHSHSSNGEKNDSDNIMIDVFR 756

Query: 61  WSRCKKPLPQKVMRSIGIPLPSEHVEVLEDNLDWEDVQWSQTGVWIAGKEYLLARVHFLS 120
           WSRCKKPLPQK+MRSIGIPLP EHVEVLE+N+DWEDVQWSQTGVWIAGKEY LARVHFLS
Sbjct: 757 WSRCKKPLPQKIMRSIGIPLPLEHVEVLEENIDWEDVQWSQTGVWIAGKEYTLARVHFLS 816

Query: 121 MN 180
            N
Sbjct: 817 SN 818

Query: 181  240
           
Sbjct: 877  818

Query: 241  300
           
Sbjct: 937  818

Query: 301  360
           
Sbjct: 997  818

Query: 361  367
           
Sbjct: 1057  818

The following BLAST results are available for this feature:

BLAST of WMU08457 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08450.1	5.5e-50	72.31	Histone deacetylation protein Rxt3 (InterPro:IPR013951)	[more]

BLAST of WMU08457 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJZ2_CUCSA	5.7e-64	95.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337260 PE=4 SV=1	[more]
A0A0D2QAY5_GOSRA	1.6e-53	81.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G106900 PE=4 SV=1	[more]
A0A061FAF0_THECC	2.7e-53	80.33	Peptidyl-prolyl cis-trans isomerase G isoform 4 OS=Theobroma cacao GN=TCM_033022...	[more]
A0A061FAS4_THECC	2.7e-53	80.33	Peptidyl-prolyl cis-trans isomerase G isoform 1 OS=Theobroma cacao GN=TCM_033022...	[more]
V4RXK6_9ROSI	2.3e-52	80.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024915mg PE=4 SV=1	[more]

BLAST of WMU08457 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121850\|ref\|XP_008460844.1\|	1.5e-65	97.54	PREDICTED: uncharacterized protein LOC103499596 isoform X2 [Cucumis melo]	[more]
gi\|659121842\|ref\|XP_008460840.1\|	1.5e-65	97.54	PREDICTED: uncharacterized protein LOC103499596 isoform X1 [Cucumis melo]	[more]
gi\|778670329\|ref\|XP_011649442.1\|	2.2e-64	95.90	PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis sativus]	[more]
gi\|823132537\|ref\|XP_012462906.1\|	5.9e-54	81.97	PREDICTED: uncharacterized protein LOC105782603 [Gossypium raimondii]	[more]
gi\|590612807\|ref\|XP_007022486.1\|	1.0e-53	80.33	Peptidyl-prolyl cis-trans isomerase G isoform 4 [Theobroma cacao]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007845	Cla007845	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0086980	S1_0086980	EST
S1_0137271	S1_0137271	EST
S4_0004792	S4_0004792	EST
S4_0120075	S4_0120075	EST