WMU06801 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU06801
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Thioredoxin-like 3-1
Location	Chr4 : 5708344 .. 5710374 (-)
Sequence length	527

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGTTCCACAACACAACAAAACCCCAATCTCTTCTCTCTCAATTACAAATCCCAAAAGAAACCCTAAAAACACATACAAGGAAGAAGGTAAAACAGAGAGAAATGTCTGTTTTGGGTGCAAGTAGTTCTCAGATTCTGTACAGACAACTCCACCAACACCAAATTCTAAGCAATGGGAAGCGTTGTTTTCTCAATACAGATTTTGGGGTTCTTGGAGATCTGCGGCGGAGGGAGCTGAGGATCAAGGCGGAGGCTGGGTTTTGGCCGGACTTATCGCGTCCGGAGGCGGTGGAGATGGAGTCCATTGACGATTCCGATCACCTCGATCGGATTTTGATTCACGCCCAACAACTTTCTCAGCCAATTCTTATTGATTGGATGGCAACTTAGGTGTAGGAAATGCATATACTTGAAGCCTAAATTGGAGAAACTTGCTGCTGATTATGTTACCAAAGTAAAATTCCACTATGTAGATGTGTATAAGGTCCCTCAATCTCTTGTAAAACGTGGAGCATCTCAAAAATGCCA

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	2

Homology

[Close]

BLAST of WMU06801 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-14
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRG-ASQKC 414
           LSQ ++I W    CRKCIYLKPKLEKLAA+Y  + KF+YVDV KVPQ+LVKRG  S KC
Sbjct: 117 LSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISVKC 175

Query: 415  474
           
Sbjct: 177  175

Query: 475  526
           
Sbjct: 237  175

HSP 2 Score: 64.3 bits (155), Expect = 8.5e-11
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 3


Query: 63  LKTHTRKKVKQREMSVLGASSSQILYRQLH--------QHQILSNGKRC------FLNTD 122
           + + T+  +K +++    AS+ Q+L RQ H        + + L+  K+C      + N  
Sbjct: 12  ISSSTKNLLKAKKIMAALASNPQMLTRQAHGNKKEQLWRKESLNLEKKCGFCVSVYSNEK 71

Query: 123 FGVLGDLRRRELRIKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWM 182
            G       +E R+KA   FW ++++P  +EME I++ + LD +L HA+QLSQPI+I+WM
Sbjct: 72  LG--RSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWM 128

Query: 183 AT 242
           A+
Sbjct: 132 AS 128

Query: 243  302
           
Sbjct: 192  128

Query: 303  362
           
Sbjct: 252  128

Query: 363  387
           
Sbjct: 312  128

[Close]

BLAST of WMU06801 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQK 414
           L + ++I W    CRKCIYLKPKLEKLAA++  +++F++VDV  VP  LV R    K
Sbjct: 97  LGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTK 153

Query: 415  474
           
Sbjct: 157  153

Query: 475  523
           
Sbjct: 217  153

HSP 2 Score: 33.1 bits (74), Expect = 2.1e-01
Identity = 21/64 (32.81%), Postives = 32/64 (50.00%), Query Frame = 3


Query: 195 TDFGVLGDLRRRELRIKAEAGFWPDLS-RPEAVEMESIDDSDHLDRILIHAQQLSQPILI 254
           TD   L   R R + I+ + G   +L   P +VE+  I    H D+++  AQ+L + ++I
Sbjct: 44  TDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVI 103

Query: 255 DWMA 314
            WMA
Sbjct: 104 VWMA 107

Query: 315  374
           
Sbjct: 164  107

Query: 375  384
           
Sbjct: 224  107

[Close]

BLAST of WMU06801 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQK 414
           LSQ ++I W    CRKCIYLKPKLEKLAA+Y  + KF+YVDV KVPQ+LVKRG   K
Sbjct: 117 LSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISK 173

Query: 415  474
           
Sbjct: 177  173

Query: 475  523
           
Sbjct: 237  173

HSP 2 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 3


Query: 63  LKTHTRKKVKQREMSVLGASSSQILYRQLH--------QHQILSNGKRC------FLNTD 122
           + + T+  +K +++    AS+ Q+L RQ H        + + L+  K+C      + N  
Sbjct: 12  ISSSTKNLLKAKKIMAALASNPQMLTRQAHGNKKEQLWRKESLNLEKKCGFCVSVYSNEK 71

Query: 123 FGVLGDLRRRELRIKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWM 182
            G       +E R+KA   FW ++++P  +EME I++ + LD +L HA+QLSQPI+I+WM
Sbjct: 72  LG--RSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWM 128

Query: 183 AT 242
           A+
Sbjct: 132 AS 128

Query: 243  302
           
Sbjct: 192  128

Query: 303  362
           
Sbjct: 252  128

Query: 363  387
           
Sbjct: 312  128

[Close]

BLAST of WMU06801 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-08
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 361 QFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRG 420
           Q ++I W    CRKCIYLKP+LEK+A ++   V+F++VDV KVPQ++VKRG
Sbjct: 103 QPIIIDWMASWCRKCIYLKPRLEKIAGEF-PGVRFYFVDVNKVPQTVVKRG 152

Query: 421  480
           
Sbjct: 163  152

Query: 481  511
           
Sbjct: 223  152

HSP 2 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 3


Query: 213 GDLRRREL---RIKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMA 272
           G  RRRE     ++AEA FW D+S+P  VEME ID  + LD  L  + +  QPI+IDWMA
Sbjct: 55  GKGRRRERGDGMLRAEAYFW-DVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMA 112

Query: 273 T 332
           +
Sbjct: 115 S 112

Query: 333  387
           
Sbjct: 175  112

[Close]

BLAST of WMU06801 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-08
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQK 414
           L + ++I W    CRKCIYLKPKLEKLAA++  +++F++VDV  VP  LV R    K
Sbjct: 97  LGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTK 153

Query: 415  474
           
Sbjct: 157  153

Query: 475  523
           
Sbjct: 217  153

HSP 2 Score: 33.1 bits (74), Expect = 3.7e+00
Identity = 21/64 (32.81%), Postives = 32/64 (50.00%), Query Frame = 3


Query: 195 TDFGVLGDLRRRELRIKAEAGFWPDLS-RPEAVEMESIDDSDHLDRILIHAQQLSQPILI 254
           TD   L   R R + I+ + G   +L   P +VE+  I    H D+++  AQ+L + ++I
Sbjct: 44  TDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVI 103

Query: 255 DWMA 314
            WMA
Sbjct: 104 VWMA 107

Query: 315  374
           
Sbjct: 164  107

Query: 375  384
           
Sbjct: 224  107

[Close]

BLAST of WMU06801 vs. TrEMBL
Match: A0A0A0KZ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-33
Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 3


Query: 102 MSVLGASSSQILYRQLHQHQILSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLSR 161
           MSVLGAS+S ILY  LHQH  L+N KRC FL+TDFG   D RRRELRIKAEAGFWPDLSR
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFG---DHRRRELRIKAEAGFWPDLSR 60

Query: 162 PEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMAT 221
           P +VEMESIDDSD LDRILIHAQ LSQPILIDWMAT
Sbjct: 61  PASVEMESIDDSDQLDRILIHAQHLSQPILIDWMAT 93

Query: 222  281
           
Sbjct: 121  93

Query: 282  341
           
Sbjct: 181  93

Query: 342  387
           
Sbjct: 241  93

[Close]

BLAST of WMU06801 vs. TrEMBL
Match: A0A0A0KZ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.0e-14
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQK 414
           LSQ +LI W    CRKCIYLKPKLEKLAADYVTK KF+YVDV KVPQSLVKRG   K
Sbjct: 82  LSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISK 138

Query: 415  474
           
Sbjct: 142  138

Query: 475  523
           
Sbjct: 202  138

HSP 2 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 59/109 (54.13%), Postives = 71/109 (65.14%), Query Frame = 3


Query: 102 MSVLGASSSQILYRQLHQ-----HQIL---SNGKRCFLNTDFGVLGDLRRRELR------ 161
           MSVL A+SSQIL+R+ H      HQ L   S     F     G  GD R RE +      
Sbjct: 1   MSVL-AASSQILWREFHHRDHHHHQQLCASSGNYSFFAGKSGGFWGDFRNREDKKTSKRD 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMAT 221
           ++AEA FWPDLS+P +VEME I+D DHLDRIL HAQ++SQPILIDWMA+
Sbjct: 61  MRAEA-FWPDLSKPASVEMEPINDCDHLDRILSHAQEISQPILIDWMAS 107

Query: 222  281
           
Sbjct: 121  107

Query: 282  341
           
Sbjct: 181  107

Query: 342  387
           
Sbjct: 241  107

[Close]

BLAST of WMU06801 vs. TrEMBL
Match: W9SW93_9ROSA (Thioredoxin-like 3-1 OS=Morus notabilis GN=L484_028031 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRG 414
           +SQ +LI W    CRKCIYLKPKLEKLAADY TK+KF+ VDV KVPQ LVKRG
Sbjct: 96  ISQPILIDWMASWCRKCIYLKPKLEKLAADYDTKIKFYCVDVNKVPQDLVKRG 148

Query: 415  474
           
Sbjct: 156  148

Query: 475  511
           
Sbjct: 216  148

HSP 2 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 3


Query: 102 MSVLGASS---SQILYRQLHQHQILSNGKRCFLNTDFGVLGD-----------LRRRELR 161
           MSVL A+S   S+ +Y++  Q Q+ +NG   F   + G  G            +R RE R
Sbjct: 1   MSVLAANSQILSREIYQRYQQQQLWNNGSCLFSPKNSGYFGSDWKDRKWKNKTVRSREWR 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMA 221
           ++A    WPDLSRP A+EME+I+DSDHLD+IL  A+QLSQPI+IDWMA
Sbjct: 61  VQA---LWPDLSRPSAIEMETINDSDHLDQILARARQLSQPIIIDWMA 105

Query: 222  281
           
Sbjct: 121  105

Query: 282  341
           
Sbjct: 181  105

Query: 342  384
           
Sbjct: 241  105

[Close]

BLAST of WMU06801 vs. TrEMBL
Match: A0A0D2VXI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G099700 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQKC 414
           LSQ ++I W    CRKCIYLKPKLEKLAA++ TK+KF+YVDV KVPQ+LVKRG    C
Sbjct: 95  LSQPIIIDWMAAWCRKCIYLKPKLEKLAAEFDTKIKFYYVDVNKVPQALVKRGNISVC 152

Query: 415  474
           
Sbjct: 155  152

Query: 475  526
           
Sbjct: 215  152

HSP 2 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 3


Query: 102 MSVLGASS---SQILYRQLHQHQILSNGKRCFLNTDFGVLGD-----------LRRRELR 161
           MSVL A+S   S+ +Y++  Q Q+ +NG   F   + G  G            +R RE R
Sbjct: 1   MSVLAANSQILSREIYQRYQQQQLWNNGSCLFSPKNSGYFGSDWKDRKWKNKTVRSREWR 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMA 221
           ++A    WPDLSRP A+EME+I+DSDHLD+IL  A+QLSQPI+IDWMA
Sbjct: 61  VQA---LWPDLSRPSAIEMETINDSDHLDQILARARQLSQPIIIDWMA 105

Query: 222  281
           
Sbjct: 121  105

Query: 282  341
           
Sbjct: 181  105

Query: 342  384
           
Sbjct: 241  105

[Close]

BLAST of WMU06801 vs. TrEMBL
Match: A0A0D2S0J9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G099700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 355 LSQFLLIGWQLR-CRKCIYLKPKLEKLAADYVTKVKFHYVDVYKVPQSLVKRGASQK 414
           LSQ ++I W    CRKCIYLKPKLEKLAA++ TK+KF+YVDV KVPQ+LVKRG   K
Sbjct: 95  LSQPIIIDWMAAWCRKCIYLKPKLEKLAAEFDTKIKFYYVDVNKVPQALVKRGNISK 151

Query: 415  474
           
Sbjct: 155  151

Query: 475  523
           
Sbjct: 215  151

HSP 2 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 3


Query: 102 MSVLGASS---SQILYRQLHQHQILSNGKRCFLNTDFGVLGD-----------LRRRELR 161
           MSVL A+S   S+ +Y++  Q Q+ +NG   F   + G  G            +R RE R
Sbjct: 1   MSVLAANSQILSREIYQRYQQQQLWNNGSCLFSPKNSGYFGSDWKDRKWKNKTVRSREWR 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMA 221
           ++A    WPDLSRP A+EME+I+DSDHLD+IL  A+QLSQPI+IDWMA
Sbjct: 61  VQA---LWPDLSRPSAIEMETINDSDHLDQILARARQLSQPIIIDWMA 105

Query: 222  281
           
Sbjct: 121  105

Query: 282  341
           
Sbjct: 181  105

Query: 342  384
           
Sbjct: 241  105

[Close]

BLAST of WMU06801 vs. NCBI nr
Match: gi|659083001|ref|XP_008442136.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 84/96 (87.50%), Postives = 85/96 (88.54%), Query Frame = 3


Query: 102 MSVLGASSSQILYRQLHQHQILSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLSR 161
           M VLGASSS ILY QLHQHQ LSNGKRC FLNTDFG   D RRRELRIKAEAGFWPDLSR
Sbjct: 1   MYVLGASSSHILYAQLHQHQFLSNGKRCGFLNTDFG---DHRRRELRIKAEAGFWPDLSR 60

Query: 162 PEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMAT 221
           P +VEMESIDDSD LDRILIHAQQLSQPILIDWMAT
Sbjct: 61  PASVEMESIDDSDQLDRILIHAQQLSQPILIDWMAT 93

Query: 222  281
           
Sbjct: 121  93

Query: 282  341
           
Sbjct: 181  93

Query: 342  387
           
Sbjct: 241  93

[Close]

BLAST of WMU06801 vs. NCBI nr
Match: gi|700199630|gb|KGN54788.1| (hypothetical protein Csa_4G496780 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 3


Query: 102 MSVLGASSSQILYRQLHQHQILSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLSR 161
           MSVLGAS+S ILY  LHQH  L+N KRC FL+TDFG   D RRRELRIKAEAGFWPDLSR
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFG---DHRRRELRIKAEAGFWPDLSR 60

Query: 162 PEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMAT 221
           P +VEMESIDDSD LDRILIHAQ LSQPILIDWMAT
Sbjct: 61  PASVEMESIDDSDQLDRILIHAQHLSQPILIDWMAT 93

Query: 222  281
           
Sbjct: 121  93

Query: 282  341
           
Sbjct: 181  93

Query: 342  387
           
Sbjct: 241  93

[Close]

BLAST of WMU06801 vs. NCBI nr
Match: gi|778694930|ref|XP_004146393.2| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 3


Query: 165 LSNGKRC-FLNTDFGVLGDLRRRELRIKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIH 224
           L+N KRC FL+TDFG   D RRRELRIKAEAGFWPDLSRP +VEMESIDDSD LDRILIH
Sbjct: 42  LTNAKRCSFLSTDFG---DHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIH 101

Query: 225 AQQLSQPILIDWMAT 284
           AQ LSQPILIDWMAT
Sbjct: 102 AQHLSQPILIDWMAT 113

Query: 285  344
           
Sbjct: 162  113

Query: 345  387
           
Sbjct: 222  113

[Close]

BLAST of WMU06801 vs. NCBI nr
Match: gi|703156089|ref|XP_010111374.1| (Thioredoxin-like 3-1 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 7.5e-17
Identity = 59/109 (54.13%), Postives = 71/109 (65.14%), Query Frame = 3


Query: 102 MSVLGASSSQILYRQLHQ-----HQIL---SNGKRCFLNTDFGVLGDLRRRELR------ 161
           MSVL A+SSQIL+R+ H      HQ L   S     F     G  GD R RE +      
Sbjct: 1   MSVL-AASSQILWREFHHRDHHHHQQLCASSGNYSFFAGKSGGFWGDFRNREDKKTSKRD 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMAT 221
           ++AEA FWPDLS+P +VEME I+D DHLDRIL HAQ++SQPILIDWMA+
Sbjct: 61  MRAEA-FWPDLSKPASVEMEPINDCDHLDRILSHAQEISQPILIDWMAS 107

Query: 222  281
           
Sbjct: 121  107

Query: 282  341
           
Sbjct: 181  107

Query: 342  387
           
Sbjct: 241  107

[Close]

BLAST of WMU06801 vs. NCBI nr
Match: gi|823255965|ref|XP_012460641.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 3


Query: 102 MSVLGASS---SQILYRQLHQHQILSNGKRCFLNTDFGVLGD-----------LRRRELR 161
           MSVL A+S   S+ +Y++  Q Q+ +NG   F   + G  G            +R RE R
Sbjct: 1   MSVLAANSQILSREIYQRYQQQQLWNNGSCLFSPKNSGYFGSDWKDRKWKNKTVRSREWR 60

Query: 162 IKAEAGFWPDLSRPEAVEMESIDDSDHLDRILIHAQQLSQPILIDWMA 221
           ++A    WPDLSRP A+EME+I+DSDHLD+IL  A+QLSQPI+IDWMA
Sbjct: 61  VQA---LWPDLSRPSAIEMETINDSDHLDQILARARQLSQPIIIDWMA 105

Query: 222  281
           
Sbjct: 121  105

Query: 282  341
           
Sbjct: 181  105

Query: 342  384
           
Sbjct: 241  105

The following BLAST results are available for this feature:

BLAST of WMU06801 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06690.2	1.7e-14	67.80	WCRKC thioredoxin 1	[more]
AT5G04260.1	2.1e-09	50.88	WCRKC thioredoxin 2	[more]

BLAST of WMU06801 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL31_ARATH	5.0e-13	66.67	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	2.8e-08	56.86	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]
TRL32_ARATH	3.7e-08	50.88	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]

BLAST of WMU06801 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ53_CUCSA	3.0e-33	81.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1	[more]
A0A0A0KZ53_CUCSA	7.0e-14	77.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1	[more]
W9SW93_9ROSA	1.5e-11	73.58	Thioredoxin-like 3-1 OS=Morus notabilis GN=L484_028031 PE=4 SV=1	[more]
A0A0D2VXI8_GOSRA	3.9e-12	67.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G099700 PE=4 SV=1	[more]
A0A0D2S0J9_GOSRA	6.6e-12	68.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G099700 PE=4 SV=1	[more]

BLAST of WMU06801 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083001\|ref\|XP_008442136.1\|	1.1e-36	87.50	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo]	[more]
gi\|700199630\|gb\|KGN54788.1\|	2.0e-33	81.25	hypothetical protein Csa_4G496780 [Cucumis sativus]	[more]
gi\|778694930\|ref\|XP_004146393.2\|	3.3e-25	84.00	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus]	[more]
gi\|703156089\|ref\|XP_010111374.1\|	7.5e-17	54.13	Thioredoxin-like 3-1 [Morus notabilis]	[more]
gi\|823255965\|ref\|XP_012460641.1\|	8.2e-16	48.15	PREDICTED: thioredoxin-like 3-1, chloroplastic [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011663	Cla011663	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0026870	S1_0026870	EST
S2_0060464	S2_0060464	EST
S2_0094119	S2_0094119	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 41..137 score: 1.2
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 64..130 score: 5.9
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 65..129 score: 2.2
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 83..130 score: 4.
None	No IPR available	PANTHER	PTHR10438:SF283	THIOREDOXIN-LIKE 3-1, CHLOROPLASTIC	coord: 41..137 score: 1.2