WMU05838 (transcribed_cluster) Watermelon (97103) v1

NameWMU05838
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description2-keto-3-deoxy-L-rhamnonate aldolase
LocationChr10 : 1470956 .. 1471777 (-)
Sequence length820
The following sequences are available for this feature:

transcribed_cluster sequence

GTTTCTCAATGCCTCATGATGGGCCAATTGACATGAAAAGGCGTGGATATCAGATGATTTCTGGGACTGTTGATTTGGGTTTTGTTTCGTAGTGCTGCTGTTGAGGATGTAAGGAAGTTTAGAATGAGCGAAATGGATGGCTCTGACGATGAGGATCAACCTCTCACTCACAAGGAAGAGGATGAAGAAGATAAGTATTGGAGCGAATGAAACCGCTGCTTGTTTTCCTTTTCTTTGATAATGCTTGATCTTTTTGGCCTTCTTTTTGTTTCAAGTACATAGAGTAGAGCTTTGAGTTGTTGCATTTCTTGATGGGTATATTGAATTATGCTCATATGTGAAAACATGCTCTTTCTTATCTGTTCAAGTTTTGTATGTACAGACATTTTCAGTTTTACTGTCTTTCTTCTGGTCTGCCGAAAACTCTGCATCAGGGCCTAGCTTTTGACTTCTCTATGCATTTAGTTTTACATCTTCATCTTGGTATAGGATTGGTAATCATAGACTGAAATTTAGTACTGTATAATATTACAAGTCCATGTGCAAGGAGACAGGTTGGCTTCGGATGTTCCCTGTTCTCATTGGTCAGGATCACGTGCCATCATTGGTCAATGTTTGTCTCTTTTCCCCATCTTTGCCCTCTGAAATGTTGAGCAATCTAGGAAGTTTGAGAAGTTTTGGGGGGCGATAGGAGTAAAATCCCCTTTCAGTTTGTGTCCTTTTTGCATCTCCTATGTCTGCTGCCATACTTTACAGCAGCAAGGTGTGATGTAAAAACATACCCTTTATAAAGGTCCTCTTTGGCTCTCAAGAATCAGGT
BLAST of WMU05838 vs. TrEMBL
Match: A0A0A0L3Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002930 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1

Query: 82  LFRSAAVEDVRKFRMSEMDGSDDEDQPLTHKEEDEEDKYWSE 141
           LFRSAAVEDVRKFRMSEMD S+DE+QPLTHKEEDEEDKYWSE
Sbjct: 322 LFRSAAVEDVRKFRMSEMDSSEDENQPLTHKEEDEEDKYWSE 363

Query: 142 201
           
Sbjct: 382 363

Query: 202 208
           
Sbjct: 442 363

BLAST of WMU05838 vs. TrEMBL
Match: A0A0A0L3Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002930 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 3

Query: 3   FSMPHDGPIDMKRRGYQMISGTVDLG 62
           FSMPHDGPIDMKRRGYQMISG VDLG
Sbjct: 296 FSMPHDGPIDMKRRGYQMISGAVDLG 321

Query: 63  81
           
Sbjct: 356 321

BLAST of WMU05838 vs. NCBI nr
Match: gi|659095423|ref|XP_008448571.1| (PREDICTED: uncharacterized protein LOC103490709 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 4.6e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1

Query: 82  LFRSAAVEDVRKFRMSEMDGSDDEDQPLTHKEEDEEDKYWSE 141
           LFRSAAVEDVRKFRMSEMD S+DEDQPLTHKEEDEEDKYWSE
Sbjct: 322 LFRSAAVEDVRKFRMSEMDSSEDEDQPLTHKEEDEEDKYWSE 363

Query: 142 201
           
Sbjct: 382 363

Query: 202 208
           
Sbjct: 442 363

BLAST of WMU05838 vs. NCBI nr
Match: gi|449456787|ref|XP_004146130.1| (PREDICTED: uncharacterized protein LOC101213205 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1

Query: 82  LFRSAAVEDVRKFRMSEMDGSDDEDQPLTHKEEDEEDKYWSE 141
           LFRSAAVEDVRKFRMSEMD S+DE+QPLTHKEEDEEDKYWSE
Sbjct: 322 LFRSAAVEDVRKFRMSEMDSSEDENQPLTHKEEDEEDKYWSE 363

Query: 142 201
           
Sbjct: 382 363

Query: 202 208
           
Sbjct: 442 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L3Q7_CUCSA1.9e-1392.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002930 PE=4 SV=1[more]
A0A0A0L3Q7_CUCSA4.2e-0596.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659095423|ref|XP_008448571.1|4.6e-1395.24PREDICTED: uncharacterized protein LOC103490709 [Cucumis melo][more]
gi|449456787|ref|XP_004146130.1|1.7e-1292.86PREDICTED: uncharacterized protein LOC101213205 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008883Cla008883gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0023102S3_0023102EST
S3_0033315S3_0033315EST
S3_0090267S3_0090267EST
S3_0105808S3_0105808EST
S3_0127692S3_0127692EST
S4_0113979S4_0113979EST