WMU05303 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU05303
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Vacuolar protein sorting-associated protein 20 like 2
Location	Chr4 : 4404183 .. 4416008 (-)
Sequence length	410

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAACAAGCCAGCGGAGTCCGACTGAGGCAGTTCTTATTGTTTTCATCCTACAAGTCTAGAACCAAAAATTACCCTCTATTCTCTCAATCTTCAGTTGGTTCACTCCGTTGATTCTTCATCCGTCAAGGAATCAAAGACGAAGAATGGGGGATTGACGGATACTGTGCTGCTCAATCCCTCTGCTGAGACAGTCTATCATATTCCCCAAGTTGAAAAATCAAAAGTGCTCGGCATTCCAAATTGGGGAGAAGTAGATGGGGGAATTTATTCGTCAAGAAGCCCAAAGTCACCGATGTTGATAAAGCGATTCTGTCTCTCAAGACCCAAAGACGCAAACTCGGTCAATATCAACAACAGCTTGATGCCGTCATTGAAGCAAGAAAAGATGCTGCAAGAGAGTTTAGTTCG

Library


Library category	ESTs
watermelon fruit 18d library	3
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU05303 vs. TAIR10
Match: AT5G09260.1 (AT5G09260.1 vacuolar protein sorting-associated protein 20.2)

HSP 1 Score: 81.3 bits (199), Expect = 5.2e-16
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPK+T+VD+AILSLKTQRRKLGQYQQQL+ VIEA K AAR+
Sbjct: 2   GNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TAIR10
Match: AT5G63880.2 (AT5G63880.2 SNF7 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKP++T+VD+AILSLKTQRRKLGQYQQ+L+ VIEA K AAR+
Sbjct: 2   GNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-15
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPK+T+VD+AILSLKTQRRKLGQYQQQL+ VIEA K AAR+
Sbjct: 2   GNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKP++T+VD+AILSLKTQRRKLGQYQQ+L+ VIEA K AAR+
Sbjct: 2   GNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TrEMBL
Match: V4T722_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPK+TDVD+AILSLKTQRRKL QYQQQLDAVIEA K AAR+
Sbjct: 2   GNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TrEMBL
Match: A0A059B8R7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05139 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPKVTDVDKAILSLKTQRRKLG YQQQL+AVIEA K AAR+
Sbjct: 2   GNLFVKKPKVTDVDKAILSLKTQRRKLGLYQQQLEAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TrEMBL
Match: D7STC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00780 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GN+FVKKPK+TDVD+AILSLKTQRRKL QYQQQLDAVIEA K AAR+
Sbjct: 2   GNIFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TrEMBL
Match: C6T3K6_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPKVTDVDKAIL+LKTQRRKL QYQQ+LDAVIEA K AAR+
Sbjct: 2   GNLFVKKPKVTDVDKAILALKTQRRKLAQYQQKLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. TrEMBL
Match: C6TE32_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPKVTDVDKAIL+LKTQRRKL QYQQ+LDAVIEA K AAR+
Sbjct: 2   GNLFVKKPKVTDVDKAILALKTQRRKLAQYQQKLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. NCBI nr
Match: gi|659083085|ref|XP_008442177.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEA K+AARE
Sbjct: 2   GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEAEKNAARE 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. NCBI nr
Match: gi|778695034|ref|XP_011653914.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GN+FVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEA K+AARE
Sbjct: 2   GNIFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEAEKNAARE 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. NCBI nr
Match: gi|567879115|ref|XP_006432116.1| (hypothetical protein CICLE_v10002389mg [Citrus clementina])

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPK+TDVD+AILSLKTQRRKL QYQQQLDAVIEA K AAR+
Sbjct: 2   GNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. NCBI nr
Match: gi|702451725|ref|XP_010025761.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Eucalyptus grandis])

HSP 1 Score: 82.0 bits (201), Expect = 8.7e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GNLFVKKPKVTDVDKAILSLKTQRRKLG YQQQL+AVIEA K AAR+
Sbjct: 2   GNLFVKKPKVTDVDKAILSLKTQRRKLGLYQQQLEAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

[Close]

BLAST of WMU05303 vs. NCBI nr
Match: gi|225447834|ref|XP_002270590.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Vitis vinifera])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 3


Query: 261 GNLFVKKPKVTDVDKAILSLKTQRRKLGQYQQQLDAVIEARKDAARE 320
           GN+FVKKPK+TDVD+AILSLKTQRRKL QYQQQLDAVIEA K AAR+
Sbjct: 2   GNIFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEKQAARD 48

Query: 321  380
           
Sbjct: 62   48

Query: 381  402
           
Sbjct: 122  48

The following BLAST results are available for this feature:

BLAST of WMU05303 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09260.1	5.2e-16	82.98	vacuolar protein sorting-associated protein 20.2	[more]
AT5G63880.2	4.4e-15	78.72	SNF7 family protein	[more]

BLAST of WMU05303 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP202_ARATH	9.2e-15	82.98	Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana...	[more]
VP201_ARATH	7.8e-14	78.72	Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana...	[more]

BLAST of WMU05303 vs. TrEMBL


Match Name	E-value	Identity	Description
V4T722_9ROSI	1.6e-13	87.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002389mg PE=3 SV=1	[more]
A0A059B8R7_EUCGR	2.1e-13	89.36	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05139 PE=3 SV=1	[more]
D7STC3_VITVI	2.7e-13	85.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00780 PE=3 SV=...	[more]
C6T3K6_SOYBN	3.5e-13	87.23	Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1	[more]
C6TE32_SOYBN	3.5e-13	87.23	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of WMU05303 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083085\|ref\|XP_008442177.1\|	1.6e-14	95.74	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Cucumi...	[more]
gi\|778695034\|ref\|XP_011653914.1\|	2.7e-14	93.62	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Cucumis sat...	[more]
gi\|567879115\|ref\|XP_006432116.1\|	6.6e-13	87.23	hypothetical protein CICLE_v10002389mg [Citrus clementina]	[more]
gi\|702451725\|ref\|XP_010025761.1\|	8.7e-13	89.36	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Eucalyptus ...	[more]
gi\|225447834\|ref\|XP_002270590.1\|	1.1e-12	85.11	PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011622	Cla011622	gene
Cla011623	Cla011623	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0040655	S2_0040655	EST
S2_0080456	S2_0080456	EST
S2_0098648	S2_0098648	EST
S3_0168898	S3_0168898	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..134 scor