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| Name | MU67013 |
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| Type | transcribed_cluster |
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| Organism | Cucumis melo (Melon (DHL92) v3.5.1) |
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| Description | NDR1/HIN1-like 8, putative isoform 1 |
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| Location | chr4 : 1124374 .. 1124934 (+) |
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| Sequence length | 354 |
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The following sequences are available for this feature:
transcribed_cluster sequence ATCCTCCTCCTACCGGTCGTAATTTCAGTTACGAGCATCGCCATCCCCGCCGCCCCCGTCCCCAACCTGTCCACAAACCGGAGGTCACTTCTCTGGCCGATGGAATAGAATCTTTCACTTTCGACGAAAAGCCTGTGGACTTCGATGTTGCGAAACCTAACTGTGAGGTTAAACAACAGACACCTGGAAATTCTTCCTCAGCTGAGGCTGCGGATGATGTTTATAGTAGGTTAGAGATGCTGCAGCGGAGTTCCGAGGAGCCGGTGTTGTCGGAGGAGCAGCTCAGTATTAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATA
BLAST of MU67013 vs. NCBI nr
Match: gi|659132069|ref|XP_008466000.1| (PREDICTED: E3 ubiquitin-protein ligase RNF14 [Cucumis melo]) HSP 1 Score: 181.0 bits (458), Expect = 1.2e-42 Identity = 94/117 (80.34%), Postives = 94/117 (80.34%), Query Frame = 3
Query: 3 PPPTGRNFSYEXXXXXXXXXXXVHKPEVTSLADGIESFTFDEKPVDFDVAKPNCEVKQQT 62
PPPTGRNFSYE VHKPEVTSLADGIESFTFDEKPVDFDVAKPNCEVKQQT
Sbjct: 45 PPPTGRNFSYEHRHPRRPRPQPVHKPEVTSLADGIESFTFDEKPVDFDVAKPNCEVKQQT 104
Query: 63 PGNSSSAEAADDVYSRLEMLQRSSEEPVLSEEQLSINXXXXXXXXXXXXSIYGENVY 122
PGNSSSAEAADDVYSRLEMLQRSSEEPVLSEEQLSIN SIYGENVY
Sbjct: 105 PGNSSSAEAADDVYSRLEMLQRSSEEPVLSEEQLSINDQLQEDELLALESIYGENVY 161
Query: 123 182
Sbjct: 165 161
Query: 183 242
Sbjct: 225 161
Query: 243 302
Sbjct: 285 161
Query: 303 354
Sbjct: 345 161
BLAST of MU67013 vs. NCBI nr
Match: gi|449436832|ref|XP_004136196.1| (PREDICTED: E3 ubiquitin-protein ligase RNF14 [Cucumis sativus]) HSP 1 Score: 152.1 bits (383), Expect = 5.9e-34 Identity = 81/117 (69.23%), Postives = 85/117 (72.65%), Query Frame = 3
Query: 3 PPPTGRNFSYEXXXXXXXXXXXVHKPEVTSLADGIESFTFDEKPVDFDVAKPNCEVKQQT 62
P PT RNF+Y+ VHKPEVT+LADGIE+FTFDEKPVDFDVAKPNCEV T
Sbjct: 45 PSPTARNFNYDHRIPRRPRPHPVHKPEVTALADGIETFTFDEKPVDFDVAKPNCEV---T 104
Query: 63 PGNSSSAEAADDVYSRLEMLQRSSEEPVLSEEQLSINXXXXXXXXXXXXSIYGENVY 122
PGNSS EA DDVYSRLEMLQRSSEEP LSEEQLSIN SIYGENVY
Sbjct: 105 PGNSSLTEAEDDVYSRLEMLQRSSEEPELSEEQLSINNQLQEDELLALESIYGENVY 158
Query: 123 182
Sbjct: 165 158
Query: 183 242
Sbjct: 225 158
Query: 243 302
Sbjct: 285 158
Query: 303 354
Sbjct: 345 158
The following BLAST results are available for this feature:
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
| Term | Definition |
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Vocabulary: Molecular Function
| Term | Definition |
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| GO:0004842 | ubiquitin-protein transferase activity |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0016567 | protein ubiquitination |
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016567 |
protein ubiquitination |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
| Feature Name | Unique Name | Type |
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| VEa0008D05 | VEa0008D05 | EST |
Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | PANTHER | PTHR11685:SF121 | F5D14.10 PROTEIN | coord: 50..117
score: 1.8 |
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