MU66568 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU66568
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ras-related protein rab-11.1
Location	chr3 : 9238863 .. 9243475 (-)
Sequence length	811

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCGATCGCAAGCCCCCACGTCTTCTTCTGTCGGATCGATTGCAAGCCACCGTAAGAGGTTCGTCTGTTGTCGTCGCTGAAGACATTGTGTTTGTCCGTCACTGAAGATTTGGTGTGTTCGTCCGCCATCATTTAAAACAGGTTCATCCGCAACAGTTCATCTGCCGCTGCAACAGTTCGTCTATTGCCGCAACAGGTTCTTCCGTCACAATAGGTTCGTCCCCCGCAACAGTAATGAAAGAAATTAGTAGTAGTAGCGGTGGAAGCAACGAACGACGATGGCAACCATTGGCACTTCGATTTGCTAGCAGCTATGAGGACACTTGAGGGTGGGTTCAATGCTAGGGCTTAAAGTGATGGCTTACGATTTACCCCTCGGTCGTCAACTCGGGTTTGAATTGGATATGTTTGTAAAGTCTGTTAATGTAACATCCAAGAGGGTTGAAGACTTGTTAGGAAAAACCATGGTATATTACTACATGTTTCAAGGTTGTCGAGTAAAAATTGGAAGACTATATAGTTATTAAGTAGATTGGGAGGGGAGCATTTGAATCGACTTTTCTTGTTTATCACAAGGCTAAGAAGAAAAGAAATGAAACAAATTTTTGCTTATGGCAAAGCAAATAGAGAAGTTCAAGCGCACTGCCCACCAAGAGATCAGGTTTGTTCGAGAAATCTAGGGCAGAGACTGCTATGGCTCATAAGGTAGACCACGAGTATGACTATTTGTTCAAGATTGTTCCGATTGAGGATTCCAACATTGGGAAGTCCAACATTCTTTNCAGATTTACTAGAAACAAGTTCTACTTGG

Library


Library category	ESTs
melon CM-VEa library	1

Homology

[Close]

BLAST of MU66568 vs. Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-10
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAH+VDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-09
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MA++VDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. Swiss-Prot
Match: RAA2B_ARATH (Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-09
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MA+++DHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.8e-09
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MA++VDHEYDYLFK+V I DS +GKSNIL RFTRN+F L
Sbjct: 1   MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           M H+VD EYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TrEMBL
Match: A0A0D3ECN5_BRAOL (Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 664 LFEKSRAETAMAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 723
           LF +S+ +T MAH+V+ +YDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 37  LFVRSKRKTKMAHRVEQDYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 85

Query: 724  783
           
Sbjct: 97   85

Query: 784  811
           
Sbjct: 157  85

[Close]

BLAST of MU66568 vs. TrEMBL
Match: A0A0A0KE61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188120 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAHKVDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TrEMBL
Match: B9S3C5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0732500 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAHKVDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TrEMBL
Match: W1PX83_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00165p00060220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAHKVDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TrEMBL
Match: A0A067LDP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02924 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.2e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAH+VDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TAIR10
Match: AT1G07410.1 (AT1G07410.1 RAB GTPase homolog A2B)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MA+++DHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TAIR10
Match: AT3G46830.1 (AT3G46830.1 RAB GTPase homolog A2C)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-10
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           M H+VD EYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TAIR10
Match: AT5G59150.1 (AT5G59150.1 RAB GTPase homolog A2D)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAH+V+ +YDYLFKIV I DS +GK+NIL RFTRN+F L
Sbjct: 1   MAHRVEQDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TAIR10
Match: AT1G09630.1 (AT1G09630.1 RAB GTPase 11C)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MA + D EYDYLFK+V I DS +GKSN+L RFTRN+F L
Sbjct: 1   MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. TAIR10
Match: AT5G60860.1 (AT5G60860.1 RAB GTPase homolog A1F)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-08
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1


Query: 697 AHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 756
           A++ D EYDYLFK+V I DS +GKSN+L RFTRN+F L
Sbjct: 3   AYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL 40

Query: 757  811
           
Sbjct: 63   40

[Close]

BLAST of MU66568 vs. NCBI nr
Match: gi|659094566|ref|XP_008448132.1| (PREDICTED: ras-related protein Rab11C-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 586 KRNETNFCLWQSK*RSSSALPTKRSGLFEKSRAETAMAHKVDHEYDYLFKIVPIEDSNIG 645
           +RNETNFC +  K      L     GLF+KSR ET MAHKVDHEYDYLFKIV I DS +G
Sbjct: 6   RRNETNFCSY-GKVNREVQLHCPPRGLFKKSRVETTMAHKVDHEYDYLFKIVSIGDSGVG 65

Query: 646 KSNILXRFTRNKFYL 705
           KSNIL RFTRN+FYL
Sbjct: 66  KSNILSRFTRNEFYL 79

Query: 706  765
           
Sbjct: 126  79

Query: 766  811
           
Sbjct: 186  79

[Close]

BLAST of MU66568 vs. NCBI nr
Match: gi|659123617|ref|XP_008461753.1| (PREDICTED: ras-related protein Rab11C-like isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 589 RNETNFCLWQSK*RSSSALPTKRSGLFEKSRAETAMAHKVDHEYDYLFKIVPIEDSNIGK 648
           RNETNFC +    R        R GLF+KSRAETAMAHKVDHEYDYLFKIV I DS++GK
Sbjct: 7   RNETNFCSYGKVNREVQVHCPPR-GLFKKSRAETAMAHKVDHEYDYLFKIVLIGDSDVGK 66

Query: 649 SNILXRFTRNKFYL 708
           SNIL RFTRN+F L
Sbjct: 67  SNILSRFTRNEFCL 79

Query: 709  768
           
Sbjct: 127  79

Query: 769  811
           
Sbjct: 187  79

[Close]

BLAST of MU66568 vs. NCBI nr
Match: gi|659123623|ref|XP_008461756.1| (PREDICTED: ras-related protein Rab11C-like isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 589 RNETNFCLWQSK*RSSSALPTKRSGLFEKSRAETAMAHKVDHEYDYLFKIVPIEDSNIGK 648
           RNETNFC +    R        R GLF+KSRAETAMAHKVDHEYDYLFKIV I DS++GK
Sbjct: 6   RNETNFCSYGKVNREVQVHCPPR-GLFKKSRAETAMAHKVDHEYDYLFKIVLIGDSDVGK 65

Query: 649 SNILXRFTRNKFYL 708
           SNIL RFTRN+F L
Sbjct: 66  SNILSRFTRNEFCL 78

Query: 709  768
           
Sbjct: 126  78

Query: 769  811
           
Sbjct: 186  78

[Close]

BLAST of MU66568 vs. NCBI nr
Match: gi|1009114793|ref|XP_015873880.1| (PREDICTED: ras-related protein Rab2BV [Ziziphus jujuba])

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAHKVDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

[Close]

BLAST of MU66568 vs. NCBI nr
Match: gi|449450768|ref|XP_004143134.1| (PREDICTED: ras-related protein Rab11C [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 694 MAHKVDHEYDYLFKIVPIEDSNIGKSNILXRFTRNKFYL 753
           MAHKVDHEYDYLFKIV I DS +GKSNIL RFTRN+F L
Sbjct: 1   MAHKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Query: 754  811
           
Sbjct: 61   39

The following BLAST results are available for this feature:

BLAST of MU66568 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RB11C_LOTJA	4.7e-10	79.49	Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1	[more]
RB2BV_BETVU	3.0e-09	76.92	Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1	[more]
RAA2B_ARATH	4.0e-09	74.36	Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2	[more]
RB11A_TOBAC	6.8e-09	74.36	Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1	[more]
RAA2C_ARATH	1.2e-08	74.36	Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4	[more]

BLAST of MU66568 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D3ECN5_BRAOL	1.4e-08	65.31	Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0A0KE61_CUCSA	2.3e-08	82.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188120 PE=4 SV=1	[more]
B9S3C5_RICCO	2.3e-08	82.05	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0732500 PE=4 SV=1	[more]
W1PX83_AMBTC	2.3e-08	82.05	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00165p00060220 PE=4 SV=...	[more]
A0A067LDP3_JATCU	5.2e-08	79.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02924 PE=4 SV=1	[more]

BLAST of MU66568 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07410.1	2.2e-10	74.36	RAB GTPase homolog A2B	[more]
AT3G46830.1	6.5e-10	74.36	RAB GTPase homolog A2C	[more]
AT5G59150.1	3.2e-09	69.23	RAB GTPase homolog A2D	[more]
AT1G09630.1	2.1e-08	66.67	RAB GTPase 11C	[more]
AT5G60860.1	3.6e-08	65.79	RAB GTPase homolog A1F	[more]

BLAST of MU66568 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094566\|ref\|XP_008448132.1\|	3.0e-17	66.67	PREDICTED: ras-related protein Rab11C-like [Cucumis melo]	[more]
gi\|659123617\|ref\|XP_008461753.1\|	1.5e-16	68.92	PREDICTED: ras-related protein Rab11C-like isoform X1 [Cucumis melo]	[more]
gi\|659123623\|ref\|XP_008461756.1\|	1.5e-16	68.92	PREDICTED: ras-related protein Rab11C-like isoform X2 [Cucumis melo]	[more]
gi\|1009114793\|ref\|XP_015873880.1\|	2.0e-08	82.05	PREDICTED: ras-related protein Rab2BV [Ziziphus jujuba]	[more]
gi\|449450768\|ref\|XP_004143134.1\|	2.0e-08	82.05	PREDICTED: ras-related protein Rab11C [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010589	MELO3C010589	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
VEa0001G04	VEa0001G04	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 5..37 score: 5.
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..39 score: 2.2
None	No IPR available	PANTHER	PTHR24073:SF495	SUBFAMILY NOT NAMED	coord: 1..39 score: 2.2