MU66001 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU66001
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mitochondrial carrier protein
Location	chr6 : 836064 .. 836803 (+)
Sequence length	644

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGTTACAAGTCTCAATTTTTATAATTCGTTTTAGAGAACCCAATTCATCTTTCTCTTCGCTTTCATTCTGATCAACGATTCAACATACAACAACCGCCTCAGTTTCTTTCTCATTCATTCAAATTCGTCGACCCGTCTTCCCATTAATTTGGGTCCTCCAGCTACCAAAAAGTCATACACAGGAAGATATGGTGGGCTTGAAGCCGAATTTGCCCTCTTGGACGAGTTTCTCATCGACCCGGGTTGATGTTGAGAGAAATGTTTCTTCTTTATCGGATTCCATCTTCAGAGACGGCGAAGAAGGCCCATCGGAGCAGTCTCGCCGCCTCTCTGATGCCAATTTGAGCTTTGGAGAACGATCCCTTTCCGCCGCTGGAGCCGCCGTTCTTTCTGCCATTCTCGTTAATCCCCTTGACGTTGCCAAGGAATGTTAAATTTCTATGAATTTATAATTGGGATTTTGCCATTTCTTAGTTTCTTTCATTTTCTTTAGAGTACGGTAGTTTCAATTACTAACATCTTTAGTTTCTTCGAAGTGTTGCATATTTGTGAGTACCTTTGAGTTGATTGTTTGCTTTGATTATGTGTCTTCAGACAAGGTTGCAAGCACAAGCTGCTGGAGTCCCATATCAAGGGCCATGCC

Library


Library category	ESTs
melon CM-TEa library	1

Homology

[Close]

BLAST of MU66001 vs. TrEMBL
Match: E5GCG5_CUCME (Mitochondrial carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERXXX 249
           MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGER   
Sbjct: 1   MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERSLS 60

Query: 250 XXXXXXXXXXXVNPLDVAKE 309
                      VNPLDVAKE
Sbjct: 61  AAGAAVLSAILVNPLDVAKE 80

Query: 310  369
           
Sbjct: 121  80

Query: 370  429
           
Sbjct: 181  80

[Close]

BLAST of MU66001 vs. TrEMBL
Match: E5GCG5_CUCME (Mitochondrial carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 36.2 bits (82), Expect = 6.0e+01
Identity = 17/26 (65.38%), Postives = 18/26 (69.23%), Query Frame = 1


Query: 565 LIVCFDYVSSDKVASTSCWSPISRAM 624
           L+   D     KVASTSCWSPISRAM
Sbjct: 71  LVNPLDVAKEYKVASTSCWSPISRAM 96

Query: 625  643
           
Sbjct: 131  96

HSP 2 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 61/79 (77.22%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERXXX 249
           MVGLKPNLPSWTSFSSTRVD E NVSS SDSIFRDGEEGPSEQ RRLSDANLSFGER   
Sbjct: 1   MVGLKPNLPSWTSFSSTRVDFETNVSSASDSIFRDGEEGPSEQPRRLSDANLSFGERSLS 60

Query: 250 XXXXXXXXXXXVNPLDVAK 309
                      VNPLDVAK
Sbjct: 61  AAGAAFLSAILVNPLDVAK 79

Query: 310  369
           
Sbjct: 121  79

Query: 370  427
           
Sbjct: 181  79

[Close]

BLAST of MU66001 vs. TrEMBL
Match: A0A0A0L8P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120400 PE=3 SV=1)

HSP 1 Score: 35.4 bits (80), Expect = 1.0e+02
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2


Query: 593 QTRLQAQAAGVPYQGPC 644
           +TRLQAQAAGVPYQG C
Sbjct: 79  KTRLQAQAAGVPYQGQC 95

HSP 2 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEE---GPSEQSRRLSDANLSFGER 249
           MVG +P+LPSW   ++TRVD+E NVSS+SD++FR+  E    P + S+ LSD +L FG+R
Sbjct: 124 MVGSRPSLPSWIGAAATRVDIEGNVSSMSDTMFRENREESAPPEQYSKALSDGDLGFGQR 183

Query: 250 XXXXXXXXXXXXXXVNPLDVAK 309
                         VNPLDVAK
Sbjct: 184 AFSAAGAAFISAIIVNPLDVAK 205

Query: 310  369
           
Sbjct: 244  205

Query: 370  427
           
Sbjct: 304  205

[Close]

BLAST of MU66001 vs. TrEMBL
Match: A5BTA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014580 PE=3 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 5.6e+03
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 593 QTRLQAQAAGVPYQGPC 644
           +TRLQAQAAGV Y G C
Sbjct: 205 KTRLQAQAAGVSYHGLC 221

HSP 2 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEE---GPSEQSRRLSDANLSFGER 249
           MVG +P+LPSW   ++TRVD+E NVSS+SD++FR+  E    P + S+ LSD +L FG+R
Sbjct: 1   MVGSRPSLPSWIGAAATRVDIEGNVSSMSDTMFRENREESAPPEQYSKALSDGDLGFGQR 60

Query: 250 XXXXXXXXXXXXXXVNPLDVAK 309
                         VNPLDVAK
Sbjct: 61  AFSAAGAAFISAIIVNPLDVAK 82

Query: 310  369
           
Sbjct: 121  82

Query: 370  427
           
Sbjct: 181  82

[Close]

BLAST of MU66001 vs. TrEMBL
Match: F6I6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01370 PE=3 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 5.6e+03
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2


Query: 593 QTRLQAQAAGVPYQGPC 644
           +TRLQAQAAGV Y G C
Sbjct: 82  KTRLQAQAAGVSYHGLC 98

HSP 2 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDG----EEGPSEQSRRLSDANLSFGE 249
           M G +  +PSW S ++TRVD E + SS+S+++F+D     E   S  S+  +DA+L F E
Sbjct: 1   MAGSRQGIPSWISAAATRVDFEGSASSMSETVFKDAAASKEPSSSSNSKSTADADLGFAE 60

Query: 250 RXXXXXXXXXXXXXXVNPLDVAK 309
           R              VNPLDVAK
Sbjct: 61  RAFSAAGAALVSAVLVNPLDVAK 83

Query: 310  369
           
Sbjct: 121  83

Query: 370  427
           
Sbjct: 181  83

[Close]

BLAST of MU66001 vs. NCBI nr
Match: gi|307136350|gb|ADN34164.1| (mitochondrial carrier protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERXXX 249
           MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGER   
Sbjct: 1   MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERSLS 60

Query: 250 XXXXXXXXXXXVNPLDVAKE 309
                      VNPLDVAKE
Sbjct: 61  AAGAAVLSAILVNPLDVAKE 80

Query: 310  369
           
Sbjct: 121  80

Query: 370  429
           
Sbjct: 181  80

[Close]

BLAST of MU66001 vs. NCBI nr
Match: gi|659075089|ref|XP_008437959.1| (PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 65/79 (82.28%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERXXX 249
           MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGER   
Sbjct: 1   MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERSLS 60

Query: 250 XXXXXXXXXXXVNPLDVAK 309
                      VNPLDVAK
Sbjct: 61  AAGAAVLSAILVNPLDVAK 79

Query: 310  369
           
Sbjct: 121  79

Query: 370  427
           
Sbjct: 181  79

[Close]

BLAST of MU66001 vs. NCBI nr
Match: gi|778677041|ref|XP_011650718.1| (PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 5.0e-23
Identity = 61/79 (77.22%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEEGPSEQSRRLSDANLSFGERXXX 249
           MVGLKPNLPSWTSFSSTRVD E NVSS SDSIFRDGEEGPSEQ RRLSDANLSFGER   
Sbjct: 1   MVGLKPNLPSWTSFSSTRVDFETNVSSASDSIFRDGEEGPSEQPRRLSDANLSFGERSLS 60

Query: 250 XXXXXXXXXXXVNPLDVAK 309
                      VNPLDVAK
Sbjct: 61  AAGAAFLSAILVNPLDVAK 79

Query: 310  369
           
Sbjct: 121  79

Query: 370  427
           
Sbjct: 181  79

[Close]

BLAST of MU66001 vs. NCBI nr
Match: gi|147812722|emb|CAN61750.1| (hypothetical protein VITISV_014580 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEE---GPSEQSRRLSDANLSFGER 249
           MVG +P+LPSW   ++TRVD+E NVSS+SD++FR+  E    P + S+ LSD +L FG+R
Sbjct: 124 MVGSRPSLPSWIGAAATRVDIEGNVSSMSDTMFRENREESAPPEQYSKALSDGDLGFGQR 183

Query: 250 XXXXXXXXXXXXXXVNPLDVAK 309
                         VNPLDVAK
Sbjct: 184 AFSAAGAAFISAIIVNPLDVAK 205

Query: 310  369
           
Sbjct: 244  205

Query: 370  427
           
Sbjct: 304  205

[Close]

BLAST of MU66001 vs. NCBI nr
Match: gi|731421807|ref|XP_010661879.1| (PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 190 MVGLKPNLPSWTSFSSTRVDVERNVSSLSDSIFRDGEE---GPSEQSRRLSDANLSFGER 249
           MVG +P+LPSW   ++TRVD+E NVSS+SD++FR+  E    P + S+ LSD +L FG+R
Sbjct: 1   MVGSRPSLPSWIGAAATRVDIEGNVSSMSDTMFRENREESAPPEQYSKALSDGDLGFGQR 60

Query: 250 XXXXXXXXXXXXXXVNPLDVAK 309
                         VNPLDVAK
Sbjct: 61  AFSAAGAAFISAIIVNPLDVAK 82

Query: 310  369
           
Sbjct: 121  82

Query: 370  427
           
Sbjct: 181  82

The following BLAST results are available for this feature:

BLAST of MU66001 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCG5_CUCME	2.0e-26	82.50	Mitochondrial carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
E5GCG5_CUCME	6.0e+01	65.38	Mitochondrial carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0L8P7_CUCSA	1.0e+02	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120400 PE=3 SV=1	[more]
A5BTA8_VITVI	5.6e+03	76.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014580 PE=3 SV=1	[more]
F6I6A1_VITVI	5.6e+03	76.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01370 PE=3 SV=...	[more]

BLAST of MU66001 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136350\|gb\|ADN34164.1\|	3.7e-26	82.50	mitochondrial carrier protein [Cucumis melo subsp. melo]	[more]
gi\|659075089\|ref\|XP_008437959.1\|	1.8e-25	82.28	PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Cucumis melo]	[more]
gi\|778677041\|ref\|XP_011650718.1\|	5.0e-23	77.22	PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Cucumis sativus]	[more]
gi\|147812722\|emb\|CAN61750.1\|	1.7e-10	47.56	hypothetical protein VITISV_014580 [Vitis vinifera]	[more]
gi\|731421807\|ref\|XP_010661879.1\|	1.7e-10	47.56	PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006060	MELO3C006060	gene
MELO3C006061	MELO3C006061	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
TEa0007G10	TEa0007G10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 35..79 score: 2.3
None	No IPR available	PANTHER	PTHR24089:SF397	SUBFAMILY NOT NAMED	coord: 35..79 score: 2.3