MU65478 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU65478
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein-tyrosine-phosphatase IBR5-like protein
Location	chr5 : 2356361 .. 2357469 (+)
Sequence length	660

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGTGAAAGAACGGAGGCCGTCTGTTGAGTTAACTGAATCTATTTATCAGCAGCTGCAAGCGTATGAACAAGGTTTTTGGATTACCAGAAAACTCCCTCCCAACCCTGCCAATCTTCCCTCCTGTTGGTCCGCCTTCGTTTGGCTTTGGCTTCCCAAAGACTGGCGACCCAGTTCCTATAACTCCATTCAACACCATTGGTGCAACATCAATCTTCTCCCGCCCGACCATAGATGTACCTTCCCACGAGTTTACATTCGGTGCTGGCCAAACTCAAAACAGTTTCTCTTCAAATCCCTTTGGCGCCAACCACGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCATAAAACTCTCAAGTCAGTCATCTTAATAGTTTTTGCAAGATCCCATCCATAGTTCTTTTTTTTTCTTCACTTGCAAACAAGGTTGTCAGTTGTGATGAGTCTTCCTGAATTTGAGGGGTGAAAAAAAGTGGCAAACTTTGGGTTTGTATGATGAATGGGTGTGGTTTTCTTTTTCTTCTTTTTTTTTTTTTTTTTATATAACATTACTCTTTGGGTTTGTTGTACCTCAAATGCAGTGAGATATTGTTGACTCATCACTAATCTTATACAATGTCATAAATATCAGCAGATATCTCTACTCTTTCTTTCTC

Library


Library category	ESTs
melon PSI library	1

Homology

[Close]

BLAST of MU65478 vs. TrEMBL
Match: A0A0A0KJP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421700 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 61/80 (76.25%), Postives = 61/80 (76.25%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           KVFGLPENSLPTL                   DPVPITPFNTIGATSIFSRPTIDVPSHE
Sbjct: 179 KVFGLPENSLPTLPILPPVGLPSFGFGFPKTGDPVPITPFNTIGATSIFSRPTIDVPSHE 238

Query: 129 FTFGAGQTQNSFSSNPFGAN 188
           FTFGAGQTQNSFSSNPFGAN
Sbjct: 239 FTFGAGQTQNSFSSNPFGAN 258

Query: 189  248
           
Sbjct: 299  258

Query: 249  308
           
Sbjct: 359  258

[Close]

BLAST of MU65478 vs. TrEMBL
Match: A0A0A0KJP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421700 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-07
Identity = 51/125 (40.80%), Postives = 55/125 (44.00%), Query Frame = 2


Query: 2   VKERRPSVELTESIYQQLQAYEQGFWITRKLPPN---------PANLPSCWSAFVWLWLP 61
           VKERRPSVELTESI QQLQAYEQ  +    LP N         P  LPS    F     P
Sbjct: 156 VKERRPSVELTESILQQLQAYEQKVF---GLPENSLPTLPILPPVGLPSFGFGFPKTGDP 215

Query: 62  KDWRPSSYNSIQHHWCNINLLPPDHRCTFPRVYIRCWPNSKQFLFKSLWRQPRNSTSSNI 121
               P +       +    +  P H  TF             F        PRNSTSSNI
Sbjct: 216 VPITPFNTIGATSIFSRPTIDVPSHEFTF-----GAGQTQNSFSSNPFGANPRNSTSSNI 272

Query: 122 QMDSA 181
           QMDSA
Sbjct: 276 QMDSA 272

Query: 182  241
           
Sbjct: 336  272

Query: 242  301
           
Sbjct: 396  272

Query: 302  350
           
Sbjct: 456  272

HSP 2 Score: 69.3 bits (168), Expect = 6.5e-09
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           K+FG  ++S P L                   DPV +  FN +GATSIF+RP +++P HE
Sbjct: 179 KLFGSSDSSNPHLPTFSLAGAPSLNFGFLKPNDPVSVPAFNNLGATSIFARPPLEIPPHE 238

Query: 129 FTFGAGQTQNSFS---SNPFGAN 188
           FTFGAGQTQ S S   +NP G +
Sbjct: 239 FTFGAGQTQKSISESLANPSGGD 261

Query: 189  248
           
Sbjct: 299  261

Query: 249  308
           
Sbjct: 359  261

[Close]

BLAST of MU65478 vs. TrEMBL
Match: A0A061DKZ4_THECC (Indole-3-butyric acid response 5 OS=Theobroma cacao GN=TCM_002217 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 3.2e+00
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 2


Query: 2   VKERRPSVELTESIYQQLQAYEQ 61
           VKERR SVELT+++YQQLQ YEQ
Sbjct: 156 VKERRSSVELTQAVYQQLQEYEQ 178

Query: 62   71
           
Sbjct: 216  178

HSP 2 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 35/79 (44.30%), Postives = 42/79 (53.16%), Query Frame = 3


Query: 72  VFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHEF 131
           +FG  E+  PT+                   DP+P   FNTIGA SIF+RP  DVP HEF
Sbjct: 180 IFGSMESISPTMPIFQPSGAASFTFGFPKANDPLPAPAFNTIGAASIFARPPADVPPHEF 239

Query: 132 TFGAGQTQNSFSSNPFGAN 191
            FGAGQT  +   +PF AN
Sbjct: 240 KFGAGQTDKNIVESPFIAN 258

Query: 192  251
           
Sbjct: 300  258

Query: 252  309
           
Sbjct: 360  258

[Close]

BLAST of MU65478 vs. TrEMBL
Match: D7TEG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01650 PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 5.5e+00
Identity = 39/125 (31.20%), Postives = 59/125 (47.20%), Query Frame = 2


Query: 2   VKERRPSVELTESIYQQLQAYEQGFWITRK--LPPNPANLPSCWSAFVWLWLPKDWRP-- 61
           VKERRPSVEL++++++QLQ YE+  + + +   P  P   PS  ++F +   PK   P  
Sbjct: 156 VKERRPSVELSQAVHEQLQEYERSIFGSMESISPTMPIFQPSGAASFTF-GFPKANDPLP 215

Query: 62  -SSYNSIQHHWCNINLLP----PDHRCTFPRVYIRCWPNSKQFLFKSLWRQPRNSTSSNI 121
             ++N+I     +I   P    P H   F           K  +       P N  SS+I
Sbjct: 216 APAFNTIGA--ASIFARPPADVPPHEFKF-----GAGQTDKNIVESPFIANPSNPNSSDI 272

Query: 122 QMDSA 181
            MDS+
Sbjct: 276 PMDSS 272

Query: 182  241
           
Sbjct: 336  272

Query: 242  301
           
Sbjct: 396  272

Query: 302  350
           
Sbjct: 456  272

HSP 2 Score: 65.9 bits (159), Expect = 7.2e-08
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 3


Query: 165 DPVPITPFNTIGATSIFSRPTIDVPSHEFTFGAGQTQNSFSSNPFGAN 224
           DPVP   FN+I ATSIFSRP + +P HEF FGAGQ QNS + NPF AN
Sbjct: 211 DPVPAPAFNSISATSIFSRP-LGIPPHEFQFGAGQPQNSANENPFVAN 257

Query: 225  284
           
Sbjct: 271  257

Query: 285  309
           
Sbjct: 331  257

[Close]

BLAST of MU65478 vs. TrEMBL
Match: B9SSI3_RICCO (Dual specificity protein phosphatase, putative OS=Ricinus communis GN=RCOM_0511150 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 7.2e+00
Identity = 16/23 (69.57%), Postives = 21/23 (91.30%), Query Frame = 2


Query: 2   VKERRPSVELTESIYQQLQAYEQ 61
           VKERRP+V+L +++YQQLQ YEQ
Sbjct: 156 VKERRPAVDLNQAVYQQLQEYEQ 178

Query: 62   71
           
Sbjct: 216  178

HSP 2 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 3


Query: 165 DPVPITPFNTIGATSIFSRPTIDVPSHEFTFGAGQTQNSFSSNPFGAN 224
           D VPI  FN +G TSIFSRP +D+P  EFTFGA Q +N  S + FGA+
Sbjct: 212 DSVPIPAFNNVGTTSIFSRPALDIPPLEFTFGASQARNDISGSTFGAS 259

Query: 225  284
           
Sbjct: 272  259

Query: 285  309
           
Sbjct: 332  259

[Close]

BLAST of MU65478 vs. NCBI nr
Match: gi|659098020|ref|XP_008449936.1| (PREDICTED: protein-tyrosine-phosphatase IBR5 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 61/80 (76.25%), Postives = 61/80 (76.25%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           KVFGLPENSLPTL                   DPVPITPFNTIGATSIFSRPTIDVPSHE
Sbjct: 162 KVFGLPENSLPTLQIFPPVGPPSFGFGFPKTGDPVPITPFNTIGATSIFSRPTIDVPSHE 221

Query: 129 FTFGAGQTQNSFSSNPFGAN 188
           FTFGAGQTQNSFSSNPFGAN
Sbjct: 222 FTFGAGQTQNSFSSNPFGAN 241

Query: 189  248
           
Sbjct: 282  241

Query: 249  308
           
Sbjct: 342  241

[Close]

BLAST of MU65478 vs. NCBI nr
Match: gi|778716516|ref|XP_011657552.1| (PREDICTED: protein-tyrosine-phosphatase IBR5 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 61/80 (76.25%), Postives = 61/80 (76.25%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           KVFGLPENSLPTL                   DPVPITPFNTIGATSIFSRPTIDVPSHE
Sbjct: 179 KVFGLPENSLPTLPILPPVGLPSFGFGFPKTGDPVPITPFNTIGATSIFSRPTIDVPSHE 238

Query: 129 FTFGAGQTQNSFSSNPFGAN 188
           FTFGAGQTQNSFSSNPFGAN
Sbjct: 239 FTFGAGQTQNSFSSNPFGAN 258

Query: 189  248
           
Sbjct: 299  258

Query: 249  308
           
Sbjct: 359  258

[Close]

BLAST of MU65478 vs. NCBI nr
Match: gi|694377742|ref|XP_009365153.1| (PREDICTED: protein-tyrosine-phosphatase IBR5 [Pyrus x bretschneideri])

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           K+FG  ++S PTL                   DPVP+  FN +GATSIF+RP +D+P  +
Sbjct: 179 KIFGSTDSSNPTLPAFPPAAPPSFSFGFPRANDPVPLPAFNNVGATSIFARPPLDIPPQD 238

Query: 129 FTFGAGQTQNSFSSNPFGAN 188
           FTFGA Q QN  S + F AN
Sbjct: 239 FTFGASQPQNVISGSAFSAN 258

Query: 189  248
           
Sbjct: 299  258

Query: 249  308
           
Sbjct: 359  258

[Close]

BLAST of MU65478 vs. NCBI nr
Match: gi|590711811|ref|XP_007049213.1| (Indole-3-butyric acid response 5 [Theobroma cacao])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 3


Query: 69  KVFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHE 128
           K+FG  ++S P L                   DPV +  FN +GATSIF+RP +++P HE
Sbjct: 179 KLFGSSDSSNPHLPTFSLAGAPSLNFGFLKPNDPVSVPAFNNLGATSIFARPPLEIPPHE 238

Query: 129 FTFGAGQTQNSFS---SNPFGAN 188
           FTFGAGQTQ S S   +NP G +
Sbjct: 239 FTFGAGQTQKSISESLANPSGGD 261

Query: 189  248
           
Sbjct: 299  261

Query: 249  308
           
Sbjct: 359  261

[Close]

BLAST of MU65478 vs. NCBI nr
Match: gi|225447193|ref|XP_002277180.1| (PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 35/79 (44.30%), Postives = 42/79 (53.16%), Query Frame = 3


Query: 72  VFGLPENSLPTLXXXXXXXXXXXXXXXXXXXDPVPITPFNTIGATSIFSRPTIDVPSHEF 131
           +FG  E+  PT+                   DP+P   FNTIGA SIF+RP  DVP HEF
Sbjct: 180 IFGSMESISPTMPIFQPSGAASFTFGFPKANDPLPAPAFNTIGAASIFARPPADVPPHEF 239

Query: 132 TFGAGQTQNSFSSNPFGAN 191
            FGAGQT  +   +PF AN
Sbjct: 240 KFGAGQTDKNIVESPFIAN 258

Query: 192  251
           
Sbjct: 300  258

Query: 252  309
           
Sbjct: 360  258

The following BLAST results are available for this feature:

BLAST of MU65478 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJP0_CUCSA	1.1e-24	76.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421700 PE=4 SV=1	[more]
A0A0A0KJP0_CUCSA	6.1e-07	40.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421700 PE=4 SV=1	[more]
A0A061DKZ4_THECC	3.2e+00	78.26	Indole-3-butyric acid response 5 OS=Theobroma cacao GN=TCM_002217 PE=4 SV=1	[more]
D7TEG6_VITVI	5.5e+00	31.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01650 PE=4 SV=...	[more]
B9SSI3_RICCO	7.2e+00	69.57	Dual specificity protein phosphatase, putative OS=Ricinus communis GN=RCOM_05111...	[more]

BLAST of MU65478 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098020\|ref\|XP_008449936.1\|	3.5e-24	76.25	PREDICTED: protein-tyrosine-phosphatase IBR5 [Cucumis melo]	[more]
gi\|778716516\|ref\|XP_011657552.1\|	3.5e-24	76.25	PREDICTED: protein-tyrosine-phosphatase IBR5 [Cucumis sativus]	[more]
gi\|694377742\|ref\|XP_009365153.1\|	1.9e-09	43.75	PREDICTED: protein-tyrosine-phosphatase IBR5 [Pyrus x bretschneideri]	[more]
gi\|590711811\|ref\|XP_007049213.1\|	2.1e-08	43.37	Indole-3-butyric acid response 5 [Theobroma cacao]	[more]
gi\|225447193\|ref\|XP_002277180.1\|	2.7e-08	44.30	PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014446	MELO3C014446	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
PSI38E03	PSI38E03	EST