MU63877 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU63877
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	BnaC04g50940D protein
Location	chr6 : 474519 .. 475166 (+)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAAAACCAGGGATCCACAAGACGACGACGGTCGAGAAGGTGACGAAATCGGACCGTTATCATGAGCCGAGCAAAACAGTGTCATCCTACAAGGGGCAACAACCAAATGCAATTAACATCAAGGGAGAAAATGTTGGGGCAGTAATGGAAATCGTTGAGTCGTCAAAACGGGAAGGGGGACATATGATAAAGAAGATCAAAGAGACAGCAAGAGGAATTTTAAACAACAACGACATGGCCAATGATCAAAATAACGAAGCTTCAAAAACAACTAATTCCTCGATGCCAACAAACACTTTTCTGAATAGCAATTTTCAGAGTGCCAACAATTCCCTTCTTTACAATGCAAATTTGACTCACCGCGACCCCGGTTTACACCTTTCCTTCTCTCGGAACCCCACCGGTGACCGGTTCCCTGTTGATGACAAGAAACAACATCACACAAAATACTAGAGAAAGACAGAGGATGGAGATAAAACAAAATATATGATATATTATATTGTTATGTTTTATGAAAATAAAATGAATTTTATATGCTGATTTTATGTAACGGAGAGATCAAAATGAGGGTTTAAGTTTTATTATGTGTGGTTCAGTGGTTGACTTTGGCCATTTATTCACGTATGTTGAATAATATGCGTTTGGATAT

Library


Library category	ESTs
Melon phloem library UN	1

Homology

[Close]

BLAST of MU63877 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.0e-51
Identity = 112/151 (74.17%), Postives = 118/151 (78.15%), Query Frame = 3


Query: 3   KPGIHKTTTVEKVTKSDRYHEPSKTVSSYKGQ-QPNAINIKGENVGAVMEIVESSKREGG 62
           KPGI   +TVEKVTKSDRYHE SKT+SS+KGQ QPNAINIKGENVGAVMEIVESSKREGG
Sbjct: 120 KPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 179

Query: 63  HMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXXXTH 122
           HMIKKIKETARGIL           EASK  NSSMPTNTFLNSNFQ            TH
Sbjct: 180 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 239

Query: 123 RDPGLHLSFSRNPTGDRFPVDD-KKQHHTKY 182
           RDPGLHL+FSRNPTG+R  VDD KKQHHT+Y
Sbjct: 240 RDPGLHLAFSRNPTGERSGVDDHKKQHHTRY 270

Query: 183  242
           
Sbjct: 300  270

Query: 243  302
           
Sbjct: 360  270

Query: 303  362
           
Sbjct: 420  270

Query: 363  422
           
Sbjct: 480  270

Query: 423  450
           
Sbjct: 540  270

[Close]

BLAST of MU63877 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 3


Query: 12  IHKTTTVEKVTKSDRYHEPSKTVSSYKGQ-------QPNAINIKGENVGAVMEIVESSKR 71
           +++TTT EK TK+D Y +  +  +S   Q       Q + INIKGENVGAVM I +SS  
Sbjct: 172 LYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSS-- 231

Query: 72  EGGHMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXX 131
           +G  +IKK     +              E +  +NS+ P  +F+NSNFQ           
Sbjct: 232 DGSEVIKKKPTVGQS---------KENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSS 291

Query: 132 XTHRDPGLHLSF 191
            +HRDPGLHL+F
Sbjct: 292 LSHRDPGLHLAF 292

Query: 192  251
           
Sbjct: 352  292

Query: 252  311
           
Sbjct: 412  292

Query: 312  371
           
Sbjct: 472  292

Query: 372  387
           
Sbjct: 532  292

[Close]

BLAST of MU63877 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 54/149 (36.24%), Postives = 68/149 (45.64%), Query Frame = 3


Query: 12  IHKTTTVEKVTKSDRYHEPSKTVSSYKGQQ-PNAINIKGENVGAVMEIVESSK--REGGH 71
           ++     EK +KS+R  E     S ++ QQ P  + +KG NVGAVME+ +SS   R GG 
Sbjct: 150 VYNKAADEKPSKSNRQSEHGSGKSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGE 209

Query: 72  MIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPT-NTFLNSNFQXXXXXXXXXXXXTH 131
            +KK KET                E  KT     P  + F+NSNFQ             H
Sbjct: 210 TLKK-KETE-----DDGDVDGYGHEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQH 269

Query: 132 RDPGLHLSFSRNPTGDRFPVDDKKQHHTK 191
           RDPGLHLSF     G    VD  K +  K
Sbjct: 270 RDPGLHLSFPNAADGGGAVVDGDKSYKPK 292

Query: 192  251
           
Sbjct: 330  292

Query: 252  311
           
Sbjct: 390  292

Query: 312  371
           
Sbjct: 450  292

Query: 372  431
           
Sbjct: 510  292

Query: 432  447
           
Sbjct: 570  292

[Close]

BLAST of MU63877 vs. TrEMBL
Match: A0A061DS56_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005083 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 40/129 (31.01%), Postives = 55/129 (42.64%), Query Frame = 3


Query: 72  KTVSSYKGQQPNAINIKGENVGAVMEIVESSKR---EGGHMIKKIKETARGILXXXXXXX 131
           K  S  +      I I GEN GA ME+++S  +   +G H  +K    +R I        
Sbjct: 312 KFSSDSEDSSMRVITIAGENKGAFMELIQSPHKNGFQGNHREQKRTNLSRTISDGSDYQS 371

Query: 132 XXXXEAS-------KTTNSSMPTNTFLNSNFQXXXXXXXXXXXXTHRDPGLHLSFSRNPT 191
               E           T+ +MP N F+NSN Q            TH DPG+HLS  R P+
Sbjct: 372 YSSSEEGVRKVKDKSNTSRTMPMNAFMNSNVQGVNNSIVYNSSCTHHDPGVHLSLLRKPS 431

Query: 192 GDRFPVDDK 251
           G  F V ++
Sbjct: 432 GGGFQVKER 440

Query: 252  311
           
Sbjct: 492  440

Query: 312  371
           
Sbjct: 552  440

Query: 372  429
           
Sbjct: 612  440

[Close]

BLAST of MU63877 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 3.9e-60
Identity = 123/149 (82.55%), Postives = 125/149 (83.89%), Query Frame = 3


Query: 3   KPGIHKTTTVEKVTKSDRYHEPSKTVSSYKGQQPNAINIKGENVGAVMEIVESSKREGGH 62
           KPGIHKTTTVEKVTKSDRYHEPSK VSS+KGQQPNAINIKGENVGAVMEIVESSKREGGH
Sbjct: 120 KPGIHKTTTVEKVTKSDRYHEPSKAVSSHKGQQPNAINIKGENVGAVMEIVESSKREGGH 179

Query: 63  MIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXXXTHR 122
           MIKKIKETARGIL           EASKTTNSSMPTNTFLNSNFQ            T+R
Sbjct: 180 MIKKIKETARGILNNNDMANDQNNEASKTTNSSMPTNTFLNSNFQSVNNSLLYNANLTYR 239

Query: 123 DPGLHLSFSRNPTGDRFPVDDKKQHHTKY 182
           DPGLHLSFSRNPTGDRFPVDDKKQHHTKY
Sbjct: 240 DPGLHLSFSRNPTGDRFPVDDKKQHHTKY 268

Query: 183  242
           
Sbjct: 300  268

Query: 243  302
           
Sbjct: 360  268

Query: 303  362
           
Sbjct: 420  268

Query: 363  422
           
Sbjct: 480  268

Query: 423  450
           
Sbjct: 540  268

[Close]

BLAST of MU63877 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 4.8e-50
Identity = 112/151 (74.17%), Postives = 118/151 (78.15%), Query Frame = 3


Query: 3   KPGIHKTTTVEKVTKSDRYHEPSKTVSSYKGQ-QPNAINIKGENVGAVMEIVESSKREGG 62
           KPGI   +TVEKVTKSDRYHE SKT+SS+KGQ QPNAINIKGENVGAVMEIVESSKREGG
Sbjct: 120 KPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 179

Query: 63  HMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXXXTH 122
           HMIKKIKETARGIL           EASK  NSSMPTNTFLNSNFQ            TH
Sbjct: 180 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 239

Query: 123 RDPGLHLSFSRNPTGDRFPVDD-KKQHHTKY 182
           RDPGLHL+FSRNPTG+R  VDD KKQHHT+Y
Sbjct: 240 RDPGLHLAFSRNPTGERSGVDDHKKQHHTRY 270

Query: 183  242
           
Sbjct: 300  270

Query: 243  302
           
Sbjct: 360  270

Query: 303  362
           
Sbjct: 420  270

Query: 363  422
           
Sbjct: 480  270

Query: 423  450
           
Sbjct: 540  270

[Close]

BLAST of MU63877 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 9.8e-11
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 3


Query: 12  IHKTTTVEKVTKSDRYHEPSKTVSSYKGQ-------QPNAINIKGENVGAVMEIVESSKR 71
           +++TTT EK TK+D Y +  +  +S   Q       Q + INIKGENVGAVM I +SS  
Sbjct: 172 LYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSS-- 231

Query: 72  EGGHMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXX 131
           +G  +IKK     +              E +  +NS+ P  +F+NSNFQ           
Sbjct: 232 DGSEVIKKKPTVGQS---------KENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSS 291

Query: 132 XTHRDPGLHLSF 191
            +HRDPGLHL+F
Sbjct: 292 LSHRDPGLHLAF 292

Query: 192  251
           
Sbjct: 352  292

Query: 252  311
           
Sbjct: 412  292

Query: 312  371
           
Sbjct: 472  292

Query: 372  387
           
Sbjct: 532  292

[Close]

BLAST of MU63877 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 56/149 (37.58%), Postives = 72/149 (48.32%), Query Frame = 3


Query: 9   GIHKTTTVEKVTKSDRYH-EPSKTVSSYKGQQPNAINIKGENVGAVMEIVESSK--REGG 68
           GI    TVEK +KS+R   E   + S  K Q+P  I +KG NVGAVMEI +SS   R GG
Sbjct: 156 GIVYNKTVEKPSKSNRSSGEYGSSKSHQKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGG 215

Query: 69  HMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXXXTH 128
             +KK +    G +           + ++T     P   F+NSNFQ             H
Sbjct: 216 ETLKKNETEDVGDVHGYGHED----KKTETKKKEPPITAFMNSNFQSVNNSLLFDSSCNH 275

Query: 129 RDPGLHLSFSRNPTGDRFPVDDKKQHHTK 188
           RDPGLHL+F     GD   VD +K +  K
Sbjct: 276 RDPGLHLAFPDAVDGDGAIVDGQKSYKPK 300

Query: 189  248
           
Sbjct: 336  300

Query: 249  308
           
Sbjct: 396  300

Query: 309  368
           
Sbjct: 456  300

Query: 369  428
           
Sbjct: 516  300

Query: 429  447
           
Sbjct: 576  300

[Close]

BLAST of MU63877 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 3


Query: 12  IHKTTTVEKVTKSDRYHEPSKTVSSYKGQ-------QPNAINIKGENVGAVMEIVESSKR 71
           +++TTT EK TK+D Y +  +  +S   Q       Q + INIKG+NVGAVM I +SS  
Sbjct: 174 LYQTTTTEKPTKTD-YRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSS-- 233

Query: 72  EGGHMIKKIKETARGILXXXXXXXXXXXEASKTTNSSMPTNTFLNSNFQXXXXXXXXXXX 131
           +G  ++KK     +              E +  +NS+ P  +F+NSNFQ           
Sbjct: 234 DGSEILKKKPSVGQS---------KENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSS 293

Query: 132 XTHRDPGLHLSF-SRNP 191
            +HRDPGLHL++ S+NP
Sbjct: 294 LSHRDPGLHLAYSSKNP 298

Query: 192  251
           
Sbjct: 354  298

Query: 252  311
           
Sbjct: 414  298

Query: 312  371
           
Sbjct: 474  298

Query: 372  399
           
Sbjct: 534  298

The following BLAST results are available for this feature:

BLAST of MU63877 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R5_CUCSA	1.0e-51	74.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1	[more]
A0A0A0L5T3_CUCSA	4.7e-12	37.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1	[more]
A0A0A0L320_CUCSA	2.9e-09	36.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1	[more]
A0A061DS56_THECC	1.7e-06	31.01	Uncharacterized protein OS=Theobroma cacao GN=TCM_005083 PE=4 SV=1	[more]

BLAST of MU63877 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074886\|ref\|XP_008437848.1\|	3.9e-60	82.55	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo]	[more]
gi\|449432014\|ref\|XP_004133795.1\|	4.8e-50	74.17	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus]	[more]
gi\|449432016\|ref\|XP_004133796.1\|	9.8e-11	37.88	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]	[more]
gi\|659074890\|ref\|XP_008437851.1\|	3.7e-10	37.58	PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo]	[more]
gi\|659074888\|ref\|XP_008437849.1\|	1.4e-09	36.50	PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C005995	MELO3C005995	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
PH14D5	PH14D5	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 38..142 score: 1.9
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 38..142 score: 1.9